GeneModel BLAST Result against arabidopsis

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000758-TA|BGIBMGA000758-PA|IPR009050|Globin-like,
IPR002052|N-6 Adenine-specific DNA methylase
         (215 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g58470.1 68416.m06517 expressed protein several hypothetical ...   153   9e-38
At5g61720.1 68418.m07744 expressed protein predicted protein, Ar...    30   1.4  
At3g07160.1 68416.m00853 glycosyl transferase family 48 protein ...    29   1.8  
At4g17520.1 68417.m02621 nuclear RNA-binding protein, putative s...    29   3.2  
At5g66270.1 68418.m08356 zinc finger (CCCH-type) family protein ...    28   5.5  
At5g59020.1 68418.m07393 expressed protein                             27   9.7  

>At3g58470.1 68416.m06517 expressed protein several hypothetical
           proteins - Saccharomyces cerevisiae
          Length = 248

 Score =  153 bits (371), Expect = 9e-38
 Identities = 81/215 (37%), Positives = 130/215 (60%), Gaps = 11/215 (5%)

Query: 4   DEDVPTLSAETFAALQEFYAEQSKRQEILVKLE--ADKKLTENI-LFDENWQLSQFWYDE 60
           D+D   LS++  AAL+EF A+Q+K           A  + ++ + L  E+W+LSQFWY+ 
Sbjct: 24  DDDPLVLSSQALAALREFLADQNKTVASTPPASSVAGGEESDKVELVTEDWRLSQFWYEP 83

Query: 61  KTVHSLVKVIDKVLDDR---GKVALISCPTLFVPLKRQIGDRGTVTLLEYDRRFEVHGPD 117
           +T  ++   +   L  R    +VA I+CPTL+V LK++      V LLEYD RFE +G +
Sbjct: 84  ETAETVADEV-VTLSQRIPGCRVACIACPTLYVYLKKRDPSL-QVQLLEYDMRFERYGKE 141

Query: 118 YIFYDYNNPKEVPPDVHHSYDLVVADPPFLSEECITKTSETIKLLSK---DKIILCTGTI 174
           + FYDYN P+++P  + H + ++VADPP+LS EC+ + S+TI  L+      ++L TG +
Sbjct: 142 FTFYDYNEPEDLPLQLKHCFHIIVADPPYLSRECLERVSQTILFLASPVDSLLLLLTGEV 201

Query: 175 MKDIVKELLDLKLCEFQPKHRNNLANEFSCYANFD 209
            ++   ELL ++ C F+P H + L NEF  + ++D
Sbjct: 202 QREHAAELLGVRPCVFKPHHSSKLGNEFRLFISYD 236


>At5g61720.1 68418.m07744 expressed protein predicted protein,
           Arabidopsis thaliana
          Length = 390

 Score = 29.9 bits (64), Expect = 1.4
 Identities = 16/41 (39%), Positives = 21/41 (51%)

Query: 78  GKVALISCPTLFVPLKRQIGDRGTVTLLEYDRRFEVHGPDY 118
           GK++L  C TL V L      +GT +L  Y + F   G DY
Sbjct: 2   GKISLAICLTLLVTLSTVYETQGTFSLPLYLKNFPKLGKDY 42


>At3g07160.1 68416.m00853 glycosyl transferase family 48 protein
           similar to glucan synthase GB:AAD11794 [Filobasidiella
           neoformans var. neoformans]
          Length = 1931

 Score = 29.5 bits (63), Expect = 1.8
 Identities = 21/78 (26%), Positives = 38/78 (48%), Gaps = 3/78 (3%)

Query: 3   ADEDVPTLS-AETFAALQEFYAEQSKRQEILVKLEADKKLTENILFDENWQLSQFWYDEK 61
           A  +V T+  ++    LQEFY    ++  +    E +K+L E+  F +  +L +     K
Sbjct: 103 AKREVGTIDRSQDILRLQEFYRLYREKNNVDTLKEEEKQLRESGAFTD--ELERKTVKRK 160

Query: 62  TVHSLVKVIDKVLDDRGK 79
            V + +KV+  VL+   K
Sbjct: 161 RVFATLKVLGSVLEQLAK 178


>At4g17520.1 68417.m02621 nuclear RNA-binding protein, putative
           similar to nuclear RNA binding protein GI:6492264 from
           [Arabidopsis thaliana]
          Length = 360

 Score = 28.7 bits (61), Expect = 3.2
 Identities = 12/36 (33%), Positives = 23/36 (63%), Gaps = 2/36 (5%)

Query: 10  LSAETFAALQEFYAEQSKRQEILVKL--EADKKLTE 43
           +  + F A+Q+  +++S   E+ +KL  E DK++TE
Sbjct: 242 VDTKAFEAMQQLSSKKSNNDEVFIKLGTEKDKRITE 277


>At5g66270.1 68418.m08356 zinc finger (CCCH-type) family protein
           contains Pfam domain, PF00642: Zinc finger
           C-x8-C-x5-C-x3-H type (and similar)
          Length = 449

 Score = 27.9 bits (59), Expect = 5.5
 Identities = 16/41 (39%), Positives = 23/41 (56%), Gaps = 2/41 (4%)

Query: 8   PTLSAETFAALQEFYAEQSKR--QEILVKLEADKKLTENIL 46
           P LS    AAL     EQ  +   ++LVKL +D K+ EN++
Sbjct: 157 PELSLLASAALSALTKEQGSQVDPDLLVKLLSDPKIVENLI 197


>At5g59020.1 68418.m07393 expressed protein
          Length = 780

 Score = 27.1 bits (57), Expect = 9.7
 Identities = 13/42 (30%), Positives = 22/42 (52%)

Query: 156 SETIKLLSKDKIILCTGTIMKDIVKELLDLKLCEFQPKHRNN 197
           S+ + LL+K +     G I +D    LL +K C ++P  R +
Sbjct: 276 SQCVSLLTKARNKSSKGKISEDRASSLLSVKHCMYEPCQRQD 317


  Database: arabidopsis
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.319    0.137    0.404 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 5,359,633
Number of Sequences: 28952
Number of extensions: 232318
Number of successful extensions: 620
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 613
Number of HSP's gapped (non-prelim): 6
length of query: 215
length of database: 12,070,560
effective HSP length: 78
effective length of query: 137
effective length of database: 9,812,304
effective search space: 1344285648
effective search space used: 1344285648
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
S2: 57 (27.1 bits)