Silkworm BLAST Result against tribolium

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000757-TA|BGIBMGA000757-PA|IPR003029|RNA binding S1,
IPR013026|Tetratricopeptide region, IPR003107|RNA-processing protein,
HAT helix
         (1005 letters)

Database: tribolium 
           317 sequences; 114,650 total letters

Searching....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY800247-1|AAV66724.1|  790|Tribolium castaneum pangolin protein.      29   0.16 
AY600514-1|AAT11862.1|  242|Tribolium castaneum iroquois-like pr...    25   2.6  
U09586-2|AAC47271.1|  712|Tribolium castaneum protease, reverse ...    25   3.4  
DQ855493-1|ABH88180.1|  127|Tribolium castaneum chemosensory pro...    24   6.0  

>AY800247-1|AAV66724.1|  790|Tribolium castaneum pangolin protein.
          Length = 790

 Score = 29.1 bits (62), Expect = 0.16
 Identities = 18/59 (30%), Positives = 32/59 (54%), Gaps = 2/59 (3%)

Query: 629 GTDDVRKTEDSKTDQGRKGRGEPAEKRRTVNVTEELRPVLHAPSAKDFWSGTLDSGKTL 687
           G DD+  T++ K  +  +G GE  EKR + N+TEE   ++    +++   G+  S K +
Sbjct: 8   GGDDLGSTDEVKVFKD-EGDGED-EKRSSENLTEEKSSLIDLTESEEKSGGSYSSNKNV 64


>AY600514-1|AAT11862.1|  242|Tribolium castaneum iroquois-like
           protein protein.
          Length = 242

 Score = 25.0 bits (52), Expect = 2.6
 Identities = 19/95 (20%), Positives = 43/95 (45%), Gaps = 13/95 (13%)

Query: 382 SLIPTQTFRINRKRKAKEKHDSIGEER-ETEDEGATQINEEKDKPKNKQTLASGDAPDXX 440
           +L    T+  N +R+ K+++    E + +T+D+    +++  D+ K+++     D  D  
Sbjct: 127 TLTQVSTWFANARRRLKKENKMTWEPKNKTDDDDDALVSDSDDREKDEE-----DKRD-- 179

Query: 441 XXXXXDNRVDGEMNGRTEGKTSEESDAIDTDLSEE 475
                D  + G +     GK  ++ D  D D  ++
Sbjct: 180 -----DTDMHGRIKSERNGKDLDDDDMNDDDRKDD 209


>U09586-2|AAC47271.1|  712|Tribolium castaneum protease, reverse
           transcriptase andRNase H protein.
          Length = 712

 Score = 24.6 bits (51), Expect = 3.4
 Identities = 10/32 (31%), Positives = 16/32 (50%)

Query: 336 NNLMAYVPKTMVSIEPIENLTEAFHVGQIVSC 367
           NN+   VP+  + I   +++T     G  VSC
Sbjct: 81  NNIQRVVPEIKIQISQQQSVTALLDTGSEVSC 112


>DQ855493-1|ABH88180.1|  127|Tribolium castaneum chemosensory
           protein 7 protein.
          Length = 127

 Score = 23.8 bits (49), Expect = 6.0
 Identities = 14/53 (26%), Positives = 27/53 (50%), Gaps = 1/53 (1%)

Query: 458 EGKTSEESDAIDTDLSEECEQVLTPEDLALLDLSQCRTK-KQYKKRIDSILNA 509
           E K + + D +D D     ++VLT     L+D   C ++ ++ KK +   L++
Sbjct: 20  ENKYTNKYDNVDVDKILNNDRVLTNYIKCLMDEGPCTSEGRELKKTLPDALSS 72


  Database: tribolium
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 114,650
  Number of sequences in database:  317
  
Lambda     K      H
   0.315    0.132    0.369 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 195,771
Number of Sequences: 317
Number of extensions: 7753
Number of successful extensions: 15
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 14
Number of HSP's gapped (non-prelim): 4
length of query: 1005
length of database: 114,650
effective HSP length: 64
effective length of query: 941
effective length of database: 94,362
effective search space: 88794642
effective search space used: 88794642
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)
S2: 48 (23.4 bits)