Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA000757-TA|BGIBMGA000757-PA|IPR003029|RNA binding S1,
IPR013026|Tetratricopeptide region, IPR003107|RNA-processing protein,
HAT helix
(1005 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At3g11964.1 68416.m01479 S1 RNA-binding domain-containing protei... 180 4e-45
At4g03430.1 68417.m00470 pre-mRNA splicing factor-related simila... 41 0.004
At2g22795.1 68415.m02704 expressed protein 40 0.006
At5g65900.1 68418.m08295 DEAD/DEAH box helicase, putative contai... 39 0.019
At3g05900.1 68416.m00664 neurofilament protein-related similar t... 38 0.025
At1g56660.1 68414.m06516 expressed protein 36 0.10
At5g14580.1 68418.m01710 polyribonucleotide nucleotidyltransfera... 36 0.14
At4g37820.1 68417.m05351 expressed protein Kaposi's sarcoma-asso... 35 0.31
At4g07520.1 68417.m01174 hypothetical protein contains Pfam prof... 35 0.31
At1g17760.1 68414.m02198 suppressor of forked protein family pro... 35 0.31
At5g41020.1 68418.m04986 myb family transcription factor contain... 34 0.41
At1g14690.1 68414.m01756 microtubule associated protein (MAP65/A... 34 0.41
At5g41790.1 68418.m05088 COP1-interactive protein 1 / CIP1 almos... 34 0.55
At4g33740.2 68417.m04791 expressed protein 33 0.72
At4g33740.1 68417.m04790 expressed protein 33 0.72
At1g15340.1 68414.m01835 methyl-CpG-binding domain-containing pr... 33 0.72
At1g48920.1 68414.m05480 nucleolin, putative similar to nuM1 pro... 33 0.96
At1g47200.1 68414.m05223 MFP1 attachment factor, putative contai... 33 1.3
At4g12750.1 68417.m02002 expressed protein 32 1.7
At1g74860.1 68414.m08676 expressed protein 32 1.7
At1g59850.1 68414.m06741 expressed protein 32 1.7
At1g48760.2 68414.m05457 delta-adaptin, putative similar to SP|O... 32 1.7
At1g48760.1 68414.m05456 delta-adaptin, putative similar to SP|O... 32 1.7
At1g29470.1 68414.m03605 dehydration-responsive protein-related ... 32 1.7
At2g15820.1 68415.m01814 pentatricopeptide (PPR) repeat-containi... 32 2.2
At1g77580.2 68414.m09032 myosin heavy chain-related low similari... 32 2.2
At1g77580.1 68414.m09033 myosin heavy chain-related low similari... 32 2.2
At1g19430.1 68414.m02421 dehydration-responsive protein-related ... 32 2.2
At5g40160.1 68418.m04874 ankyrin repeat family protein (EMB506) ... 31 2.9
At5g27330.1 68418.m03263 expressed protein 31 2.9
At5g16030.1 68418.m01874 expressed protein 31 2.9
At3g57150.1 68416.m06363 dyskerin, putative / nucleolar protein ... 31 2.9
At3g16000.1 68416.m02024 matrix-localized MAR DNA-binding protei... 31 2.9
At1g60770.1 68414.m06841 pentatricopeptide (PPR) repeat-containi... 31 2.9
At4g24270.2 68417.m03484 RNA recognition motif (RRM)-containing ... 31 3.9
At4g24270.1 68417.m03483 RNA recognition motif (RRM)-containing ... 31 3.9
At3g28770.1 68416.m03591 expressed protein 31 3.9
At3g13210.1 68416.m01653 crooked neck protein, putative / cell c... 31 3.9
At2g11910.2 68415.m01278 expressed protein 31 3.9
At2g11910.1 68415.m01277 expressed protein 31 3.9
At1g72320.3 68414.m08362 pumilio/Puf RNA-binding domain-containi... 31 3.9
At1g72320.2 68414.m08361 pumilio/Puf RNA-binding domain-containi... 31 3.9
At1g72320.1 68414.m08363 pumilio/Puf RNA-binding domain-containi... 31 3.9
At1g64330.1 68414.m07290 myosin heavy chain-related similar to m... 31 3.9
At1g29000.1 68414.m03546 heavy-metal-associated domain-containin... 31 3.9
At5g60930.1 68418.m07643 chromosome-associated kinesin, putative... 31 5.1
At5g41770.1 68418.m05086 crooked neck protein, putative / cell c... 31 5.1
At3g50690.1 68416.m05546 leucine-rich repeat family protein 31 5.1
At3g02260.1 68416.m00207 auxin transport protein (BIG) nearly id... 31 5.1
At1g06510.1 68414.m00690 expressed protein 31 5.1
At1g05320.1 68414.m00539 myosin-related similar to non-muscle my... 31 5.1
At5g45990.1 68418.m05656 crooked neck protein, putative / cell c... 30 6.7
At5g21222.1 68418.m02532 protein kinase family protein contains ... 30 6.7
At4g40020.1 68417.m05666 hypothetical protein 30 6.7
At4g36520.1 68417.m05185 trichohyalin-related low similarity to ... 30 6.7
At4g31230.1 68417.m04433 protein kinase family protein contains ... 30 6.7
At4g29060.1 68417.m04157 elongation factor Ts family protein sim... 30 6.7
At4g26630.1 68417.m03837 expressed protein 30 6.7
At3g49240.1 68416.m05381 pentatricopeptide (PPR) repeat-containi... 30 6.7
At1g33230.1 68414.m04106 expressed protein 30 6.7
At5g56210.1 68418.m07014 expressed protein ; expression supporte... 30 8.9
At5g48600.1 68418.m06011 structural maintenance of chromosomes (... 30 8.9
At5g25630.1 68418.m03050 pentatricopeptide (PPR) repeat-containi... 30 8.9
At3g26580.1 68416.m03318 expressed protein 30 8.9
At3g09620.1 68416.m01141 DEAD/DEAH box helicase, putative simila... 30 8.9
At2g18540.1 68415.m02160 cupin family protein contains Pfam prof... 30 8.9
At2g12875.1 68415.m01402 hypothetical protein 30 8.9
At1g03770.1 68414.m00357 zinc finger (C3HC4-type RING finger) fa... 30 8.9
>At3g11964.1 68416.m01479 S1 RNA-binding domain-containing protein
similar to SP|Q05022 rRNA biogenesis protein RRP5
{Saccharomyces cerevisiae}; contains Pfam profile
PF00575: S1 RNA binding domain
Length = 1838
Score = 180 bits (438), Expect = 4e-45
Identities = 95/262 (36%), Positives = 153/262 (58%), Gaps = 3/262 (1%)
Query: 740 PRSADHFQRALLANPSASQLWIAYMAFHLQATEIEKARAVARKALSTICFREEDEKLNVW 799
P +AD F++ + ++P++S +WI YMAF L +IEKAR++A +AL TI REE+EKLN+W
Sbjct: 1572 PENADEFEKLVRSSPNSSFVWIKYMAFMLSLADIEKARSIAERALRTINIREEEEKLNIW 1631
Query: 800 LALINLENRFGT--KESQQKTLEEALQMNDTFKVHSKLLDIYVDTGKQQELSALVDLMLR 857
+A NLEN G +ES +K E A Q D KV+ LL +Y T + + L+D M++
Sbjct: 1632 VAYFNLENEHGNPPEESVKKVFERARQYCDPKKVYLALLGVYERTEQYKLADKLLDEMIK 1691
Query: 858 KYKKDPKTYTLCGTACYKLNLKEKARYVMQKALNVLEKKEHVQVLVQFXXXXXXXXXXXX 917
K+K+ K + + K N +E + V+ +AL L + +H++ + Q
Sbjct: 1692 KFKQSCKIWLRKIQSSLKQN-EEAIQSVVNRALLCLPRHKHIKFISQTAILEFKCGVADR 1750
Query: 918 XXXXXXXXXXVYPQRVDVCAVYVDMLVKENDIERVRQVMERITSHQLPARKMKVLYKKWI 977
YP+R D+ +VY+D ++ + + +R + ER S LP +KMK L+KK++
Sbjct: 1751 GRSLFEGVLREYPKRTDLWSVYLDQEIRLGEDDVIRSLFERAISLSLPPKKMKFLFKKFL 1810
Query: 978 EVEEKIGDEGKAEIIRQRAIEY 999
E E+ +GDE + E ++QRA+EY
Sbjct: 1811 EYEKSVGDEERVEYVKQRAMEY 1832
Score = 70.9 bits (166), Expect = 4e-12
Identities = 95/367 (25%), Positives = 149/367 (40%), Gaps = 44/367 (11%)
Query: 15 DSSVVALGAAPD----CLQAARLQHKPDSQLLPGNALHFTVDSAVDNGVKGFVFDDVQAC 70
D +V L + PD CL L L+PG ++ V S ++NG+
Sbjct: 224 DRKIVHLSSDPDSVAKCL-TKDLSGMSFDLLIPGMMVNARVQSVLENGILFDFLTYFNGT 282
Query: 71 VLRQHLDK---GKAKRPAVGQK--VTARVLFVMPPRNMPYLTLK-NIFETTYPDLEQERK 124
V HL K+ + Q V AR+LF+ P LTL ++ P L
Sbjct: 283 VDLFHLKNPLSNKSWKDEYNQNKTVNARILFIDPSSRAVGLTLSPHVVCNKAPPLH---- 338
Query: 125 YKDGDIIEEAQVLKITGRSVHMKLDHGCTAVMSIKRIDIEEEMTDEEVIAKSYPVGSTHR 184
GDI +EA+V++I + ++L T + S+ G+ R
Sbjct: 339 VFSGDIFDEAKVVRIDKSGLLLELPSKPTPTPAYV----------------SFKEGNHIR 382
Query: 185 VRVLNYNLSDYFYSVTDDPSVVNEKYFTMEQLSVGEIVDGHVKTV-TDSYILVSLGRMHG 243
VRVL + T S FT + G + V +V T I+ G +
Sbjct: 383 VRVLGLKQMEGLAVGTLKESAFEGPVFTHSDVKPGMVTKAKVISVDTFGAIVQFSGGLKA 442
Query: 244 YVGLTHLTDTGVLLDPRQGSNPKLTKKFKVGQQVRARVLSVDPAKPALMLTLKPSLLAAD 303
L H+++ V PR KKFKVG ++ RVL + + +T K +L+ +
Sbjct: 443 MCPLRHMSEFEVT-KPR--------KKFKVGAELVFRVLGCKSKR--ITVTYKKTLVKSK 491
Query: 304 LDVLQRHDQAVIGKVYTGVIYAIRDY-ILVSFFNNLMAYVPKTMVSIEPIENLTEAFHVG 362
L +L + A G V G I I + V F+N + +VP+ + +EP + FHVG
Sbjct: 492 LPILSSYTDATEGLVTHGWITKIEKHGCFVRFYNGVQGFVPRFELGLEPGSDPDSVFHVG 551
Query: 363 QIVSCTI 369
++V C +
Sbjct: 552 EVVKCRV 558
Score = 47.2 bits (107), Expect = 5e-05
Identities = 35/130 (26%), Positives = 63/130 (48%), Gaps = 11/130 (8%)
Query: 175 KSYPVGSTHRVRVLNYNLSDYFYSVT----DDPSVVNEKYFTMEQLSVGEIVDGHVKTVT 230
K +PVG RVLN VT + + + +++L VG+++ G ++ V
Sbjct: 1329 KEFPVGKLVTGRVLNVEPLSKRIEVTLKTVNAGGRPKSESYDLKKLHVGDMISGRIRRVE 1388
Query: 231 DSYILVSLGRMHGYVGLTHLTDTGVLLDPRQGSNPKLTKKFKVGQQVRARVLSVDPAKPA 290
+ + + + G VGL H++ L D R + + ++K G+ VRA++L +D K
Sbjct: 1389 PFGLFIDIDQT-GMVGLCHISQ---LSDDRMEN---VQARYKAGESVRAKILKLDEEKKR 1441
Query: 291 LMLTLKPSLL 300
+ L +K S L
Sbjct: 1442 ISLGMKSSYL 1451
Score = 46.8 bits (106), Expect = 7e-05
Identities = 43/174 (24%), Positives = 85/174 (48%), Gaps = 17/174 (9%)
Query: 218 VGEIVDGHVKTVTDSYILVSLGRMHGYVGLTHLTDTGVLLDPRQGSNPKLTKKFKVGQQV 277
VG +V + + + V+ G + + G H+T+ VL++ S+ K F+VGQ +
Sbjct: 969 VGSVVHAEITEIKPFELRVNFG--NSFRGRIHITE--VLVNDASTSDEPFAK-FRVGQSI 1023
Query: 278 RARVLS----VDPAKPALM-LTLKPSLL--AADLDVLQRHDQA--VIGKVYTGVIYAI-R 327
ARV++ D K L L++KP++L +++ + Q +Q G+ G +Y + +
Sbjct: 1024 SARVVAKPCHTDIKKTQLWELSVKPAMLKDSSEFNDTQESEQLEFAAGQCVIGYVYKVDK 1083
Query: 328 DYILVSFFNNLMA--YVPKTMVSIEPIENLTEAFHVGQIVSCTILNVDIENKKL 379
+++ ++ N+ A ++ T +E F +G+ VS +L + E K L
Sbjct: 1084 EWVWLAVSRNVTARIFILDTSCKAHELEEFERRFPIGKAVSGYVLTYNKEKKTL 1137
Score = 41.9 bits (94), Expect = 0.002
Identities = 40/174 (22%), Positives = 76/174 (43%), Gaps = 12/174 (6%)
Query: 214 EQLSVGEIVDGHVKTVTDSYILV---SLGRMHGYVGLTHLTDTGVLLDPRQGSNPKLTKK 270
+ + +G IV G + T+T ++V S + G + HL D +
Sbjct: 572 DSIKLGSIVSGIIDTITSQAVIVRVKSKSVVKGTISAEHLAD-------HHEQAKLIMSL 624
Query: 271 FKVGQQVRARVLSVDPAKPALMLTLKPSLLAADLDVLQRHDQAVIGKVYTG-VIYAIRDY 329
+ G ++ ++L +D + L+ K SL+ ++ +Q V G V I +
Sbjct: 625 LRPGYELD-KLLVLDIEGNNMALSSKYSLIKLAEELPSDFNQLQPNSVVHGYVCNLIENG 683
Query: 330 ILVSFFNNLMAYVPKTMVSIEPIENLTEAFHVGQIVSCTILNVDIENKKLLGSL 383
V F L + P++ +P +++E+F VGQ V I++V+ E ++ SL
Sbjct: 684 CFVRFLGRLTGFAPRSKAIDDPKADVSESFFVGQSVRANIVDVNQEKSRITLSL 737
Score = 35.9 bits (79), Expect = 0.14
Identities = 29/98 (29%), Positives = 49/98 (50%), Gaps = 11/98 (11%)
Query: 215 QLSVGEIVDGHVKTVTDSYILVS-LGRMHGYVGLTHLTDTGVLLDPRQGSNPKLTKKFKV 273
QL +V G+V + ++ V LGR+ G+ + D DP+ +++ F V
Sbjct: 665 QLQPNSVVHGYVCNLIENGCFVRFLGRLTGFAPRSKAID-----DPKAD----VSESFFV 715
Query: 274 GQQVRARVLSVDPAKPALMLTLKPSLLAA-DLDVLQRH 310
GQ VRA ++ V+ K + L+LK S A+ D +Q +
Sbjct: 716 GQSVRANIVDVNQEKSRITLSLKQSSCASVDASFVQEY 753
>At4g03430.1 68417.m00470 pre-mRNA splicing factor-related similar
to pre-mRNA splicing factor pre-mRNA splicing factor
prp1 (SP:Q12381) [Fission yeast]
Length = 1029
Score = 41.1 bits (92), Expect = 0.004
Identities = 25/90 (27%), Positives = 40/90 (44%), Gaps = 6/90 (6%)
Query: 740 PRSADHFQRALLANPSASQLWIAYMAFHLQATEIEKARAVARKALSTICFREEDEKLNVW 799
P + Q A A P++ ++W+A + E E+AR + KA RE VW
Sbjct: 710 PAARAILQEAYAAIPNSEEIWLAAFKLEFENKEPERARMLLAKA------RERGGTERVW 763
Query: 800 LALINLENRFGTKESQQKTLEEALQMNDTF 829
+ +E G E +++ L E L+ TF
Sbjct: 764 MKSAIVERELGNVEEERRLLNEGLKQFPTF 793
Score = 37.1 bits (82), Expect = 0.059
Identities = 33/137 (24%), Positives = 60/137 (43%), Gaps = 5/137 (3%)
Query: 747 QRALLANPSASQLWIAYMAFHLQATEIEKARAVARKALSTICFREEDEKLNVWLALINLE 806
++A+ P A LW+ A ++ ARA+ ++A + I EE +WLA LE
Sbjct: 683 RKAVTYVPQAEVLWLMGAKEKWLAGDVPAARAILQEAYAAIPNSEE-----IWLAAFKLE 737
Query: 807 NRFGTKESQQKTLEEALQMNDTFKVHSKLLDIYVDTGKQQELSALVDLMLRKYKKDPKTY 866
E + L +A + T +V K + + G +E L++ L+++ K +
Sbjct: 738 FENKEPERARMLLAKARERGGTERVWMKSAIVERELGNVEEERRLLNEGLKQFPTFFKLW 797
Query: 867 TLCGTACYKLNLKEKAR 883
+ G + E+AR
Sbjct: 798 LMLGQLEERFKHLEQAR 814
>At2g22795.1 68415.m02704 expressed protein
Length = 734
Score = 40.3 bits (90), Expect = 0.006
Identities = 52/228 (22%), Positives = 95/228 (41%), Gaps = 19/228 (8%)
Query: 386 TQTFRINRKRKAKEKHDSIG----EERETEDEGAT---QINEEKDKPKNKQTLASGDAPD 438
+Q ++++ +AKEK +S E++ETE ++ + E++D+ K K+ +S + +
Sbjct: 462 SQEETMDKETEAKEKVESSSQEKNEDKETEKIESSFLEETKEKEDETKEKEESSSQEKTE 521
Query: 439 XXXXXXXDNRVDGEMNGRTEGKTSEESDAIDTDLSEECEQVLTPEDLALLDLSQCRTKKQ 498
DN + T+ K +E+ + + EE ++ T SQ TK++
Sbjct: 522 EKETETKDNE-ESSSQEETKDKENEKIEKEEASSQEESKENETETKEKEESSSQEETKEK 580
Query: 499 YKKRIDSILNAVSEIHSGIPLLEEKIAKIEA--------KGLTTKNKMLHTALHSEKLIN 550
++I+ +A E EKI K E+ K TK K ++ S++ +N
Sbjct: 581 ENEKIEKEESAPQE--ETKEKENEKIEKEESASQEETKEKETETKEKEESSSNESQENVN 638
Query: 551 EERAKKLNEGLETARRALADLRAEPHNNCTKQTDDVQPEVKENIENEN 598
E KK + E ++ D N T+ Q E E N
Sbjct: 639 TESEKK-EQVEENEKKTDEDTSESSKENSVSDTEQKQSEETSEKEESN 685
Score = 39.9 bits (89), Expect = 0.008
Identities = 50/271 (18%), Positives = 106/271 (39%), Gaps = 13/271 (4%)
Query: 396 KAKEKHDSIGEERETEDEGATQINEEKDKPKNKQTLASGDAPDXXXXXXXDNRVDGEMNG 455
+ + +S G+E ET+D+ + ++E+ K + +T ++ + ++
Sbjct: 421 EVSSQEESKGKESETKDKEESS-SQEESKDRETETKEKEESSSQEETMDKETEAKEKVES 479
Query: 456 RTEGKTSE-ESDAIDTDLSEECEQVLTPEDLALLDLSQCRTKKQYKKRIDSILNAVSEIH 514
++ K + E++ I++ EE ++ ED +K +K ++ N S
Sbjct: 480 SSQEKNEDKETEKIESSFLEETKE---KEDETKEKEESSSQEKTEEKETETKDNEESSSQ 536
Query: 515 SGIPLLE-EKIAKIEAKGLT-TKNKMLHTALHSEKLINEERAKKLNEGLETARRALADLR 572
E EKI K EA +K T E EE +K NE +E A +
Sbjct: 537 EETKDKENEKIEKEEASSQEESKENETETKEKEESSSQEETKEKENEKIEKEESAPQEET 596
Query: 573 AEPHNNCTKQTDDVQPEVKENIENENIQXXXXXXXXXXXXXXXXXXXTEIRDKKRKGTDD 632
E N ++ + E + E E + TE +KK + ++
Sbjct: 597 KEKENEKIEKEESASQEETKEKETETKEKEESSSNESQENVN-----TE-SEKKEQVEEN 650
Query: 633 VRKTEDSKTDQGRKGRGEPAEKRRTVNVTEE 663
+KT++ ++ ++ E++++ +E+
Sbjct: 651 EKKTDEDTSESSKENSVSDTEQKQSEETSEK 681
Score = 36.7 bits (81), Expect = 0.078
Identities = 41/221 (18%), Positives = 90/221 (40%), Gaps = 11/221 (4%)
Query: 371 NVDIENKKLLGSLIPTQTFRINRKRKAKEKHDSIGEERETEDEGATQINEEKDKPKNKQT 430
N D E +K+ S + ++ + KEK +S +E+ E E T+ NEE + +
Sbjct: 485 NEDKETEKIESSFLEETK---EKEDETKEKEESSSQEKTEEKETETKDNEESSSQEETK- 540
Query: 431 LASGDAPDXXXXXXXDNRVDGEMNGRTEGKTSEESDAIDTDLSEECEQVLTPEDLALLDL 490
D + + + TE K EES + + +E E++ E+ A +
Sbjct: 541 ----DKENEKIEKEEASSQEESKENETETKEKEESSSQEETKEKENEKI-EKEESAPQEE 595
Query: 491 SQCRTKKQYKKRIDSILNAVSEIHSGIPLLEEKIAKIEAKGLTTKNKMLHTALHSEKLIN 550
++ + ++ +K + E + EE + + + T+++ +EK +
Sbjct: 596 TKEKENEKIEKEESASQEETKEKETETKEKEESSSNESQENVNTESEKKEQVEENEKKTD 655
Query: 551 EE--RAKKLNEGLETARRALADLRAEPHNNCTKQTDDVQPE 589
E+ + K N +T ++ + + +N +T+ Q +
Sbjct: 656 EDTSESSKENSVSDTEQKQSEETSEKEESNKNGETEVTQEQ 696
Score = 33.9 bits (74), Expect = 0.55
Identities = 31/116 (26%), Positives = 51/116 (43%), Gaps = 10/116 (8%)
Query: 375 ENKKLLGSLIPTQTFRINRKRKAKEKHDSIGEERE----TEDEGATQI--NEEKDKPKNK 428
EN+K+ +Q ++ + KEK +S E + TE E Q+ NE+K
Sbjct: 600 ENEKIEKEESASQEETKEKETETKEKEESSSNESQENVNTESEKKEQVEENEKKTDEDTS 659
Query: 429 QTLASGDAPDXXXXXXXDN--RVDGEMNGRTEGKTSEESDAI-DTDLSEECEQVLT 481
++ D + + + NG TE T E+SD+ DT+L +E + V T
Sbjct: 660 ESSKENSVSDTEQKQSEETSEKEESNKNGETE-VTQEQSDSSSDTNLPQEVKDVRT 714
>At5g65900.1 68418.m08295 DEAD/DEAH box helicase, putative contains
Pfam profiles PF00270:DEAD/DEAH box helicase and
PF00271: Helicase conserved C-terminal domain;
identical to cDNA RH27 helicase, partial GI:4033334
Length = 633
Score = 38.7 bits (86), Expect = 0.019
Identities = 29/107 (27%), Positives = 48/107 (44%), Gaps = 9/107 (8%)
Query: 394 KRKAKEKHDSIGEERETEDEGATQINEEKDKPKNKQTLASGDAPDXXXXXXXDNRVDGEM 453
K+K K+K+ G+ + EDE + +K K KNK+ GD D ++ V E
Sbjct: 60 KKKKKKKNKKRGDTDDGEDEAVAEEEPKKKKKKNKKLQQRGDTND------EEDEVIAE- 112
Query: 454 NGRTEGKTSEESDAIDTDLSEECEQVLTPEDLALLDLSQCRTKKQYK 500
E K ++ DT+ E E+V E+ L+ + T K ++
Sbjct: 113 --EEEPKKKKKKQRKDTEAKSEEEEVEDKEEEKKLEETSIMTNKTFE 157
>At3g05900.1 68416.m00664 neurofilament protein-related similar to
NF-180 (GI:632549) [Petromyzon marinus] similar to
Neurofilament triplet H protein (200 kDa neurofilament
protein) (Neurofilament heavy polypeptide) (NF-H)
(Swiss-Prot:P12036) [Homo sapiens]
Length = 673
Score = 38.3 bits (85), Expect = 0.025
Identities = 55/216 (25%), Positives = 80/216 (37%), Gaps = 22/216 (10%)
Query: 382 SLIPTQTFRINRKRKAKEKHDSIGEERETEDEGATQINEEK---DKP-KNKQTLASGDAP 437
+L P + IN+ K K ++ G+ D I EEK D+P K++ T SG A
Sbjct: 371 ALSPEKVVPINQDSDTKPKEETEGDAAAPADVIEKAITEEKYVVDEPSKDETTSESGSAL 430
Query: 438 DXXXXXXXDNRVDGEMNGRTEGKTSEESDAIDTDLSEECEQVLTP--EDLALLDLSQCRT 495
+ +D E TE S +D I+ ++EE V P ++ S
Sbjct: 431 CPEKAVPTNQDLDTEPKKETEEDVSSPADIIEKAITEEKHVVEEPSKDEKTSESGSALSP 490
Query: 496 KKQYKKRIDSILNAVSEIHSGIPLLEEKIAKIEAKGLTTKNKMLHTALHSEKLINEERAK 555
+K DS E +P + I K A+ EK + EE K
Sbjct: 491 EKVVPTNQDSDTEPKKETEGDVPSPADVIEK---------------AITDEKHVVEEPLK 535
Query: 556 KLNEGLETARRALADLRAEPHNNCTKQTDDVQPEVK 591
E + A+ + L AE N K TD E K
Sbjct: 536 DEQENVSEAKDVVTKLAAE-DENIKKDTDTPVAEGK 570
>At1g56660.1 68414.m06516 expressed protein
Length = 522
Score = 36.3 bits (80), Expect = 0.10
Identities = 52/286 (18%), Positives = 107/286 (37%), Gaps = 24/286 (8%)
Query: 392 NRKRKAKEKHDSIGEERE-------------TEDEGATQINEEKDKPKNKQTLASGDAPD 438
N+K ++KH+ + +E+E +DE T+ ++K K + KQ S D
Sbjct: 150 NKKADKEKKHEDVSQEKEELEEEDGKKNKKKEKDESGTEEKKKKPKKEKKQKEESKSNED 209
Query: 439 XXXXXXXDNRVDGEMNGRTEGKTSEESDAIDTDLSEE--CEQVLTPEDLALLDLSQCRTK 496
+ G++ E K +E D D ++ E+ + +D + + + +
Sbjct: 210 KKVKGKKEKGEKGDLEKEDEEK-KKEHDETDQEMKEKDSKKNKKKEKDESCAEEKKKKPD 268
Query: 497 KQYKKRIDSILNAVSEIHSGIPLLEEKIAKIEAKGLTTKNKMLHTALHSEKLINEERAKK 556
K+ K++ +S ++ G EK K + T ++ + E ++E KK
Sbjct: 269 KEKKEKDESTEKEDKKL-KGKKGKGEKPEKEDEGKKTKEHDATEQEMDDEAADHKEGKKK 327
Query: 557 LNEGLETARRALADLRAEPHNNC-------TKQTDDVQPEVKENIENENIQXXXXXXXXX 609
N+ + + D E TKQ + + E K ++++
Sbjct: 328 KNKDKAKKKETVIDEVCEKETKDKDDDEGETKQKKNKKKEKKSEKGEKDVKEDKKKENPL 387
Query: 610 XXXXXXXXXXTEIRDKKRKGTDDVRKTEDSKTDQGRKGRGEPAEKR 655
E + ++K DD + + SK + G G+ +K+
Sbjct: 388 ETEVMSRDIKLEEPEAEKKEEDDTEEKKKSKVEGGESEEGKKKKKK 433
Score = 34.3 bits (75), Expect = 0.41
Identities = 54/287 (18%), Positives = 111/287 (38%), Gaps = 19/287 (6%)
Query: 387 QTFRINRKRKAKEKHDSIGEERETEDEGATQINEEKDKPKNKQTLASGDAPDXXXXXXXD 446
+ + + KAK + + +++ E G ++ ++EK K KN + D D D
Sbjct: 29 ENVEVEMEVKAKSI-EKVKAKKDEESSGKSKKDKEKKKGKNVDSEVKEDKDD-------D 80
Query: 447 NRVDGEMNGRT--EGKTSEESDAIDTDLSEECEQVLTPEDLALLDLSQCRTKKQYKKRID 504
+ DG+M + EG E D + E ++ ++ +L + + K+ K + +
Sbjct: 81 KKKDGKMVSKKHEEGHGDLEVKESDVKVEEHEKEHKKGKEKKHEELEEEKEGKKKKNKKE 140
Query: 505 SILNAVSEIHSGIP-------LLEEKIAKIEAKGLTTKNKMLHTALHSEKLINEERAKKL 557
+ E + + +EK E G K K + EK ++ KK
Sbjct: 141 KDESGPEEKNKKADKEKKHEDVSQEKEELEEEDGKKNKKKEKDESGTEEKKKKPKKEKKQ 200
Query: 558 NEGLETAR-RALADLRAEPHNNCTKQTDDVQPEVKENIENENIQXXXXXXXXXXXXXXXX 616
E ++ + + + + ++ D+ + + + + E +
Sbjct: 201 KEESKSNEDKKVKGKKEKGEKGDLEKEDEEKKKEHDETDQEMKEKDSKKNKKKEKDESCA 260
Query: 617 XXXTEIRDKKRKGTDDVRKTEDSKTDQGRKGRGEPAEKRRTVNVTEE 663
+ DK++K D+ + ED K +G+KG+GE EK T+E
Sbjct: 261 EEKKKKPDKEKKEKDESTEKEDKKL-KGKKGKGEKPEKEDEGKKTKE 306
Score = 30.3 bits (65), Expect = 6.7
Identities = 18/103 (17%), Positives = 47/103 (45%), Gaps = 1/103 (0%)
Query: 373 DIENKKLLGSLIPTQTFRINRKRKAKEKHDSIGEERETEDEGATQINEEKDKPKNKQTLA 432
D + + L + + ++ ++ K++ D E+++++ EG +K K K+K+
Sbjct: 380 DKKKENPLETEVMSRDIKLEEPEAEKKEEDDTEEKKKSKVEGGESEEGKKKKKKDKKKNK 439
Query: 433 SGDAPDXXXXXXXDNRVDGEMNGRTEGKTSEESDAIDTDLSEE 475
D + + + D + + EG ++E + D D+ ++
Sbjct: 440 KKDTKEPKMTEDEEEKKDDSKDVKIEGSKAKE-EKKDKDVKKK 481
>At5g14580.1 68418.m01710 polyribonucleotide nucleotidyltransferase,
putative similar to Swiss-Prot:P05055 polyribonucleotide
nucleotidyltransferase (EC 2.7.7.8) (Polynucleotide
phosphorylase) (PNPase) [Escherichia coli]
Length = 991
Score = 35.9 bits (79), Expect = 0.14
Identities = 18/70 (25%), Positives = 36/70 (51%), Gaps = 2/70 (2%)
Query: 312 QAVIGKVYTGVIYAIRDY-ILVSFFNNLMAYVPKTMVSIEPIENLTEAFHVGQIVSCTIL 370
+ V+G VY G + +I++Y V F + + +S EP+ +++ +GQ ++ +
Sbjct: 674 ELVVGGVYKGTVSSIKEYGAFVEFPGGQQGLLHMSELSHEPVSKVSDVLDIGQCITTMCI 733
Query: 371 NVDIE-NKKL 379
D+ N KL
Sbjct: 734 ETDVRGNIKL 743
>At4g37820.1 68417.m05351 expressed protein Kaposi's
sarcoma-associated herpes-like virus ORF73gene, Kaposi's
sarcoma-associated herpesvirus, U52064
Length = 532
Score = 34.7 bits (76), Expect = 0.31
Identities = 26/98 (26%), Positives = 47/98 (47%), Gaps = 12/98 (12%)
Query: 394 KRKAKEKHDSIGEERETE------DEGATQINEEKDKPKNKQTLASGDAPDXXXXXX--- 444
+RK KE+ S GE +E E ++ ++Q ++++P+NK+ AS +
Sbjct: 335 ERKKKEESSSQGEGKEEEPEKREKEDSSSQEESKEEEPENKEKEASSSQEENEIKETEIK 394
Query: 445 ---XDNRVDGEMNGRTEGKTSEESDAIDTDLSEECEQV 479
+ +G N TE K+SE +T+ ++ EQV
Sbjct: 395 EKEESSSQEGNENKETEKKSSESQRKENTNSEKKIEQV 432
>At4g07520.1 68417.m01174 hypothetical protein contains Pfam profile
PF03384: Drosophila protein of unknown function, DUF287
Length = 734
Score = 34.7 bits (76), Expect = 0.31
Identities = 24/107 (22%), Positives = 47/107 (43%), Gaps = 6/107 (5%)
Query: 491 SQCRTKKQYKKRIDSILNAVSEIHSGIPLLEEKIAKIEAKGLTTKNKMLHTALHSEKLIN 550
S C K+ + ++ ++E + + +E + A + + K +H+ ++ EK
Sbjct: 477 SSCSLKEAIDEGFKRVMAMLAEHNERLVTIERRQA---GESVPPFEKKVHSDVNKEKEDG 533
Query: 551 EERAKKLNEGLETARRALADLRAEPHNNCTKQTDDVQPEVKENIENE 597
+ K +N +ET + EP N +T DV+PE E + E
Sbjct: 534 GNKEKNVNVAIETEASVEPEASVEPEAN---ETHDVEPEANETHDVE 577
>At1g17760.1 68414.m02198 suppressor of forked protein family
protein / SUF family protein Contains Pfam PF05843:
Suppressor of forked protein (Suf); identical to
cleavage stimulation factor 77 (GI:21591637)
[Arabidopsis thaliana]; similar to suppressor of forked
protein; Su(f) protein [Drosophila virilis] GI:4092534
Length = 734
Score = 34.7 bits (76), Expect = 0.31
Identities = 19/60 (31%), Positives = 29/60 (48%), Gaps = 1/60 (1%)
Query: 939 YVDMLVKENDIERVRQVMERITSHQLPARKMKVLYKKWIEVEEKIGDEGKAEIIRQRAIE 998
Y D L + ND +R + ER S LP ++K++I+ E+ GD + QR E
Sbjct: 408 YADFLTRLNDDRNIRALFERALS-TLPVEDSAEVWKRFIQFEQTYGDLASILKVEQRMKE 466
>At5g41020.1 68418.m04986 myb family transcription factor contains
Pfam profile: PF00249 Myb DNA binding domain
Length = 588
Score = 34.3 bits (75), Expect = 0.41
Identities = 54/267 (20%), Positives = 102/267 (38%), Gaps = 20/267 (7%)
Query: 392 NRKRKAKEKHDSIGEERETEDEGATQINEEKDKPKNKQTLASG-DAPDXXXXXXXDNRVD 450
N+K+K+ K DS E E ++ ++EK + KNK+ G D ++
Sbjct: 7 NKKKKSDAKVDSEETGEEFISEHSSMKDKEKKRKKNKRENKDGFTGEDMEITGRESEKLG 66
Query: 451 GEMNGRTEGKTSEESDAIDT---DLSEECEQVLTPEDLALLDLSQCRTKKQYKKRIDSIL 507
E+ + K S++ ID+ D ++ + + E A + +K+ K++
Sbjct: 67 DEVFIVKKKKKSKKPIRIDSEAVDAVKKKSKKRSKETKADSEAEDDGVEKKSKEK-SKET 125
Query: 508 NAVSEIHSGIPLLEEKIAKIEAKGLTTKNKMLHTALHSEKLINEERAKKLNEGLETARRA 567
SE H G+ ++K +K E+ G +N S K+ ++++ K+ + +
Sbjct: 126 KVDSEAHDGVKRKKKK-SKKESGGDVIEN------TESSKVSDKKKGKRKRDDTDLGAEE 178
Query: 568 LADLRAEPHNNCTKQTDDVQPEVKENIENENIQXXXXXXXXXXXXXXXXXXXTEIRDKKR 627
D + NN K P V ++E+ N+ TE +
Sbjct: 179 NIDKEVKRKNNKKK------PSVDSDVEDINLDSTNDGKKKRKKKKQSEDSETE--ENGL 230
Query: 628 KGTDDVRKTEDSKTDQGRKGRGEPAEK 654
T D +K K + + E EK
Sbjct: 231 NSTKDAKKRRKKKKKKKQSEVSEAEEK 257
>At1g14690.1 68414.m01756 microtubule associated protein
(MAP65/ASE1) family protein low similarity to SP|P32380
NUF1 protein (Spindle poly body spacer protein SPC110)
{Saccharomyces cerevisiae}, smooth muscle myosin heavy
chain [Homo sapiens] GI:4417214; contains Pfam profile
PF03999: Microtubule associated protein (MAP65/ASE1
family)
Length = 707
Score = 34.3 bits (75), Expect = 0.41
Identities = 27/110 (24%), Positives = 56/110 (50%), Gaps = 10/110 (9%)
Query: 483 EDLALLDLSQCRTKKQYKKRIDSILNAVSEIHSGIPLLEEKIAKIEAKGLTTKNKMLHTA 542
+D L++L + + Y++++D N+ +++H + +E +IA + A L N H+
Sbjct: 22 KDRMLMELEK-ECLEIYRRKVDEAANSKAQLHQSLVSIEAEIASLLA-ALGVFNS--HSP 77
Query: 543 LHSEKLINEERAKKLNEGLETARRALADLRAEPHNNCTKQTDDVQPEVKE 592
+ + +E +K L E L R L DLR + KQ D++ ++++
Sbjct: 78 MKA-----KEGSKSLKEKLAAVRPMLEDLRLQKDER-MKQFVDIKAQIEK 121
>At5g41790.1 68418.m05088 COP1-interactive protein 1 / CIP1 almost
identical to CIP1 (GI:836950) [Arabidopsis thaliana]
Length = 1305
Score = 33.9 bits (74), Expect = 0.55
Identities = 45/218 (20%), Positives = 91/218 (41%), Gaps = 19/218 (8%)
Query: 394 KRKAKEK---HDSIGEERET-EDEGATQINEEKDKPKNKQTLASGDAPDXXXXXXXDNRV 449
K K KEK H S+ E +T E E ++Q+ E + ++ + L + D + ++
Sbjct: 40 KEKYKEKESEHSSLVELHKTHERESSSQVKELEAHIESSEKLVA-DFTQSLNNAEEEKKL 98
Query: 450 DGEMNGRTEGKTSEESDAIDTDLSE-----ECEQVLTPEDLALLDLSQCRTK------KQ 498
+ + E + + +SE E V E +L D+ + + +
Sbjct: 99 LSQKIAELSNEIQEAQNTMQELMSESGQLKESHSVKERELFSLRDIHEIHQRDSSTRASE 158
Query: 499 YKKRIDSILNAVSEIHSGIPLLEEKIAKIEAKGLTTKNKMLHTALHSEKLINEERAKKLN 558
+ +++S VS++ + + EE+ I +K + T NK+ T ++L+ E KL
Sbjct: 159 LEAQLESSKQQVSDLSASLKAAEEENKAISSKNVETMNKLEQTQNTIQELMAE--LGKLK 216
Query: 559 EGLETARRALADLRAEPHNNCTKQTDDVQPEVKENIEN 596
+ L+ L E H + + E++E +E+
Sbjct: 217 DSHREKESELSSL-VEVHETHQRDSSIHVKELEEQVES 253
>At4g33740.2 68417.m04791 expressed protein
Length = 227
Score = 33.5 bits (73), Expect = 0.72
Identities = 21/92 (22%), Positives = 47/92 (51%), Gaps = 7/92 (7%)
Query: 393 RKRKAKEKHDSIGEERETEDEGATQINEEKDKPKNKQTLASGDAPDXXXXXXXDNRVDGE 452
+++K+K ++ + EE E ++E ++E+DK K + +A D + + + E
Sbjct: 104 KEKKSKVENGNHEEEVEKDEEEEVAEDDEEDKNKQGEEVAEEDEEE-------NKHEEDE 156
Query: 453 MNGRTEGKTSEESDAIDTDLSEECEQVLTPED 484
++ + + K + ++D D L EE E ++ D
Sbjct: 157 IDEQDQSKNAGDTDKDDETLEEEKESGMSEND 188
>At4g33740.1 68417.m04790 expressed protein
Length = 227
Score = 33.5 bits (73), Expect = 0.72
Identities = 21/92 (22%), Positives = 47/92 (51%), Gaps = 7/92 (7%)
Query: 393 RKRKAKEKHDSIGEERETEDEGATQINEEKDKPKNKQTLASGDAPDXXXXXXXDNRVDGE 452
+++K+K ++ + EE E ++E ++E+DK K + +A D + + + E
Sbjct: 104 KEKKSKVENGNHEEEVEKDEEEEVAEDDEEDKNKQGEEVAEEDEEE-------NKHEEDE 156
Query: 453 MNGRTEGKTSEESDAIDTDLSEECEQVLTPED 484
++ + + K + ++D D L EE E ++ D
Sbjct: 157 IDEQDQSKNAGDTDKDDETLEEEKESGMSEND 188
>At1g15340.1 68414.m01835 methyl-CpG-binding domain-containing
protein contains Pfam profile PF01429: Methyl-CpG
binding domain
Length = 384
Score = 33.5 bits (73), Expect = 0.72
Identities = 49/204 (24%), Positives = 83/204 (40%), Gaps = 23/204 (11%)
Query: 399 EKHDSIGEERETEDEGATQINEEKDKPKNKQTLASGDAPDXXXXXXXDNRVD-GEMNGRT 457
EK + GE+ E EG T+I E + + + ++ A + VD E+ +
Sbjct: 167 EKVNKEGEKTEAGKEGQTEIAEAEKEKEGEKAEAENKEAEVVRDKKESMEVDTSELEKKA 226
Query: 458 -EGKTSEESDAI----DTDLSEECEQVLTPEDLALLDLSQCRTKKQYKKRIDSILNAVSE 512
G+ +EE + DT++ +E ++V+T D ++ K + K + + N
Sbjct: 227 GSGEGAEEPSKVEGLKDTEM-KEAQEVVTEAD---VEKKPAEEKTENKGSVTTEANGEQN 282
Query: 513 IHSGIPLLEEKIAKIEA-KGLTTKNKMLHTALHSEKLINEERAKK--LNEGLETARRALA 569
+ G P L+ A EA KG +K + EK E K+ E E A A
Sbjct: 283 VTLGEPNLD---ADAEADKGKESKE-------YDEKTTEAEANKENDTQESDEKKTEAAA 332
Query: 570 DLRAEPHNNCTKQTDDVQPEVKEN 593
+ E + K+T+ E K N
Sbjct: 333 NKENETQESDVKKTEAAVAEEKSN 356
>At1g48920.1 68414.m05480 nucleolin, putative similar to nuM1
protein GI:1279562 from [Medicago sativa]
Length = 557
Score = 33.1 bits (72), Expect = 0.96
Identities = 26/115 (22%), Positives = 45/115 (39%), Gaps = 3/115 (2%)
Query: 393 RKRKAKEKHDSIGEERETEDEGATQINEEKDKPKNKQTLASGDAPDXXXXXX--XDNRVD 450
+K KA +K E + D + + + K P K +S ++ D +
Sbjct: 49 QKEKAVKKVPKKVESSDDSDSESEEEEKAKKVPAKKAASSSDESSDDSSSDDEPAPKKAV 108
Query: 451 GEMNGRTEGKTSEESDAIDTDLSEECEQVLTPEDLALLDLSQCRTKKQYKKRIDS 505
NG K+ ++S + D D S+E E +T + A + KK+ DS
Sbjct: 109 AATNGTVAKKSKDDSSSSDDDSSDE-EVAVTKKPAAAAKNGSVKAKKESSSEDDS 162
Score = 29.9 bits (64), Expect = 8.9
Identities = 25/86 (29%), Positives = 36/86 (41%), Gaps = 4/86 (4%)
Query: 392 NRKRKAKEKHDSIGEERETEDEGATQINEEKDKPKNKQTLASGDAPDXXXXXXXDNRVDG 451
N KAK K S ++ +EDE A + + KP K + +S D D D +
Sbjct: 147 NGSVKAK-KESSSEDDSSSEDEPAKKPAAKIAKPAAKDSSSSDDDSD---EDSEDEKPAT 202
Query: 452 EMNGRTEGKTSEESDAIDTDLSEECE 477
+ K + SD+ D D EE E
Sbjct: 203 KKAAPAAAKAASSSDSSDEDSDEESE 228
>At1g47200.1 68414.m05223 MFP1 attachment factor, putative contains
similarity to MFP1 attachment factor 1 GI:7546725 from
[Lycopersicon esculentum] similar to MFP1 attachment
factor 1 [Glycine max] gi|7546729|gb|AAF63659
Length = 180
Score = 32.7 bits (71), Expect = 1.3
Identities = 29/118 (24%), Positives = 58/118 (49%), Gaps = 11/118 (9%)
Query: 461 TSEESDAIDTDLSEECEQVLTPEDLALLDLSQCRTKKQYKKRIDSILNAVSEIHSGIPLL 520
TS+E+ + DTDL++E E P ++L R +K D++LN + E S +L
Sbjct: 32 TSQEAASKDTDLTKEAESEKKPGGISL------RIWPPTQKTRDAVLNRLIETLSTESIL 85
Query: 521 EEKIAKIEAKGLTTKNKMLHTALH---SEKLINEERAKKLNE--GLETARRALADLRA 573
++ +++ TT K++ + S + +++ K+ E E ++R L ++A
Sbjct: 86 SKRYGTLKSDDATTVAKLIEEEAYGVASNAVSSDDDGIKILELYSKEISKRMLESVKA 143
>At4g12750.1 68417.m02002 expressed protein
Length = 1108
Score = 32.3 bits (70), Expect = 1.7
Identities = 18/62 (29%), Positives = 32/62 (51%), Gaps = 3/62 (4%)
Query: 459 GKTSEESDAIDTDLSEECEQVLTPEDLALLDLSQCRTKKQYKKRIDSILNAVSEIHSGIP 518
G +ESD +E E V E+ AL + +CR ++++K ++ + + + E H G P
Sbjct: 569 GSVDDESDDCSISSGDEIEHV--SENPALRKV-KCRKRRKHKSKMREVCSEIDESHPGEP 625
Query: 519 LL 520
L
Sbjct: 626 WL 627
>At1g74860.1 68414.m08676 expressed protein
Length = 400
Score = 32.3 bits (70), Expect = 1.7
Identities = 28/112 (25%), Positives = 56/112 (50%), Gaps = 18/112 (16%)
Query: 504 DSILNAVSEIHSGIPLLEEKIAKIEAKGLTTKNKMLHTALHSEKLIN------------- 550
D+ILN E + + + E+K + + + +T +N+ LHT + +++++
Sbjct: 16 DTILNTTKEAAARVMVSEKKARRYQQELVTVRNEALHTLVRLKQMLDSKVKETEMQSLKQ 75
Query: 551 EERAKKLNEGLETARRALADLRAE---PHNNCTKQTDDVQPEVKENIENENI 599
+++ ++L L A + +LR E H+ K TD Q +K+N E EN+
Sbjct: 76 QQKVEELEAQLGEAEDIVGELRLELRVLHDELKKLTDG-QKHLKKNHE-ENL 125
>At1g59850.1 68414.m06741 expressed protein
Length = 498
Score = 32.3 bits (70), Expect = 1.7
Identities = 24/109 (22%), Positives = 45/109 (41%), Gaps = 5/109 (4%)
Query: 450 DGEMNGRTEGKTSEESDAIDTDLSEECEQVLTPEDLALLDLSQCRTKKQYKKRIDSILNA 509
+G + + EES D+ S + E+L+L+ + +KQ +D
Sbjct: 390 NGSNKSQVVQSSDEESPKTDSGSSSSSQAKSNAEELSLIRHQITQIEKQQSSLLDLFQKF 449
Query: 510 VSEIHSGIPLLEEKIAKIEAKGLTTKNKMLHTALHSEKLINEERAKKLN 558
+ H+G+ LE ++ +GL T ++ T L + I + K N
Sbjct: 450 MESSHNGMQSLERRV-----RGLETSFSVISTDLLVSRSITQNGNHKRN 493
>At1g48760.2 68414.m05457 delta-adaptin, putative similar to
SP|O14617 Adapter-related protein complex 3 delta 1
subunit (Delta-adaptin 3) {Homo sapiens}; contains Pfam
profile: PF01602 Adaptin N terminal region
Length = 869
Score = 32.3 bits (70), Expect = 1.7
Identities = 24/94 (25%), Positives = 41/94 (43%)
Query: 802 LINLENRFGTKESQQKTLEEALQMNDTFKVHSKLLDIYVDTGKQQELSALVDLMLRKYKK 861
L+ F K++ L + +D KV K L ++T Q LSA+V + K
Sbjct: 154 LLGSSKSFVKKKAIGVVLRVFEKYHDAVKVCFKRLVENLETSDPQILSAVVGVFCELATK 213
Query: 862 DPKTYTLCGTACYKLNLKEKARYVMQKALNVLEK 895
DP++ YK+ + + +V+ K L + K
Sbjct: 214 DPQSCLPLAPEFYKVLVDSRNNWVLIKVLKIFAK 247
>At1g48760.1 68414.m05456 delta-adaptin, putative similar to
SP|O14617 Adapter-related protein complex 3 delta 1
subunit (Delta-adaptin 3) {Homo sapiens}; contains Pfam
profile: PF01602 Adaptin N terminal region
Length = 869
Score = 32.3 bits (70), Expect = 1.7
Identities = 24/94 (25%), Positives = 41/94 (43%)
Query: 802 LINLENRFGTKESQQKTLEEALQMNDTFKVHSKLLDIYVDTGKQQELSALVDLMLRKYKK 861
L+ F K++ L + +D KV K L ++T Q LSA+V + K
Sbjct: 154 LLGSSKSFVKKKAIGVVLRVFEKYHDAVKVCFKRLVENLETSDPQILSAVVGVFCELATK 213
Query: 862 DPKTYTLCGTACYKLNLKEKARYVMQKALNVLEK 895
DP++ YK+ + + +V+ K L + K
Sbjct: 214 DPQSCLPLAPEFYKVLVDSRNNWVLIKVLKIFAK 247
>At1g29470.1 68414.m03605 dehydration-responsive protein-related
similar to early-responsive to dehydration stress ERD3
protein [Arabidopsis thaliana] GI:15320410; contains
Pfam profile PF03141: Putative methyltransferase
Length = 770
Score = 32.3 bits (70), Expect = 1.7
Identities = 22/67 (32%), Positives = 29/67 (43%), Gaps = 3/67 (4%)
Query: 403 SIGEERETEDEGATQINEEKDKPKNKQTLASGDAPDXX--XXXXXDNRVDGE-MNGRTEG 459
S +E+ E E T+ NEEK P+ SG+ + D DG+ NG E
Sbjct: 77 SFPDEKNEETEVVTETNEEKTDPEKSGEENSGEKTESAEERKEFDDKNGDGDRKNGDGEK 136
Query: 460 KTSEESD 466
T ESD
Sbjct: 137 DTESESD 143
Score = 29.9 bits (64), Expect = 8.9
Identities = 33/134 (24%), Positives = 56/134 (41%), Gaps = 9/134 (6%)
Query: 392 NRKRKAKEKHDSIGEERETEDEGATQINEEKDKPKNKQTLASGDAPDXXXXXXXDNRVDG 451
+RK EK D+ E ET+ + TQ+ E + +NK ++G + +
Sbjct: 128 DRKNGDGEK-DTESESDETKQKEKTQLEESSE--ENKSEDSNGTEENAGESEENTEKKSE 184
Query: 452 EMNGRTEGKTSEESDAIDT-DLSEECEQVLTPEDLALLDLSQCRTKKQYKKRIDSILNAV 510
E G TE T + D D +E ++ T L + + +K K ++ SI V
Sbjct: 185 ENAGETEESTEKSKDVFPAGDQAEITKESSTGSGAWSTQLVESQNEK--KAQVSSIKWKV 242
Query: 511 SEIHSG---IPLLE 521
+ +G IP L+
Sbjct: 243 CNVTAGPDYIPCLD 256
>At2g15820.1 68415.m01814 pentatricopeptide (PPR) repeat-containing
protein contains Pfam profiles PF01535: PPR repeat,
PF03161 LAGLIDADG DNA endonuclease family
Length = 547
Score = 31.9 bits (69), Expect = 2.2
Identities = 24/72 (33%), Positives = 40/72 (55%), Gaps = 6/72 (8%)
Query: 833 SKLLDIYVDTGKQQELSALVDLM-LRKYKKDPKTYTLCGTACYKLNLKEKARYVMQKALN 891
+ LL Y+D GKQ + + DLM ++KY+ +P L Y L+LK+K V ++ +
Sbjct: 268 NSLLKGYLDCGKQVQAERIYDLMRMKKYEIEP---PLMEKLDYILSLKKKE--VKKRPFS 322
Query: 892 VLEKKEHVQVLV 903
+ K+ +VLV
Sbjct: 323 MKLSKDQREVLV 334
>At1g77580.2 68414.m09032 myosin heavy chain-related low similarity
to SP|P08799 Myosin II heavy chain, non muscle
{Dictyostelium discoideum}
Length = 779
Score = 31.9 bits (69), Expect = 2.2
Identities = 26/97 (26%), Positives = 45/97 (46%), Gaps = 5/97 (5%)
Query: 504 DSILNAVSEIHSGIPLLEEKIAKIEAKGLTTKNKML----HTALHSEKL-INEERAKKLN 558
+S+ + + + S I LEEK+ K+EA+ +N++ +H E + R K+L
Sbjct: 339 NSLASEIEVLTSRIKELEEKLEKLEAEKHELENEVKCNREEAVVHIENSEVLTSRTKELE 398
Query: 559 EGLETARRALADLRAEPHNNCTKQTDDVQPEVKENIE 595
E LE +L++E N K V+ + IE
Sbjct: 399 EKLEKLEAEKEELKSEVKCNREKAVVHVENSLAAEIE 435
>At1g77580.1 68414.m09033 myosin heavy chain-related low similarity
to SP|P08799 Myosin II heavy chain, non muscle
{Dictyostelium discoideum}
Length = 629
Score = 31.9 bits (69), Expect = 2.2
Identities = 26/97 (26%), Positives = 45/97 (46%), Gaps = 5/97 (5%)
Query: 504 DSILNAVSEIHSGIPLLEEKIAKIEAKGLTTKNKML----HTALHSEKL-INEERAKKLN 558
+S+ + + + S I LEEK+ K+EA+ +N++ +H E + R K+L
Sbjct: 305 NSLASEIEVLTSRIKELEEKLEKLEAEKHELENEVKCNREEAVVHIENSEVLTSRTKELE 364
Query: 559 EGLETARRALADLRAEPHNNCTKQTDDVQPEVKENIE 595
E LE +L++E N K V+ + IE
Sbjct: 365 EKLEKLEAEKEELKSEVKCNREKAVVHVENSLAAEIE 401
>At1g19430.1 68414.m02421 dehydration-responsive protein-related low
similarity to early-responsive to dehydration stress
ERD3 protein [Arabidopsis thaliana] GI:15320410;
contains Pfam profile PF03141: Putative
methyltransferase
Length = 724
Score = 31.9 bits (69), Expect = 2.2
Identities = 21/109 (19%), Positives = 47/109 (43%), Gaps = 2/109 (1%)
Query: 375 ENKKLLGSLIPTQTFRINRKRKAKEKHDSIGEERETEDEGATQINEEKDKPKNKQTLASG 434
E KK+ GS + + ++ H + +E + ++E ++ ++ + S
Sbjct: 95 EGKKVGGSSVHKHETKKKKEHAVSHPHKKKDVPKPVVEEVVVKEDQEHEEAESDDSDQS- 153
Query: 435 DAPDXXXXXXXDNRVDGEMNGRTEGKTSEESDAIDTDLSEECEQVLTPE 483
+ D D +GE +G +G + S ++D ++ E+ E+V E
Sbjct: 154 NKEDGEEGTESDGN-EGESDGNGDGSVDDSSASVDEEVEEKNEEVTVNE 201
>At5g40160.1 68418.m04874 ankyrin repeat family protein (EMB506)
identical to ankyrin repeat protein EMB506 [Arabidopsis
thaliana] GI:5911312; contains ankyrin repeats,
Pfam:PF00023
Length = 315
Score = 31.5 bits (68), Expect = 2.9
Identities = 22/102 (21%), Positives = 46/102 (45%), Gaps = 3/102 (2%)
Query: 391 INRKRKAKEKHDSIGEERETEDEGATQINEEKDKPKNKQTLASGDAPDXXXXXXXDNRVD 450
+ R+ A+ + + R + + E+ D + + G+ D DN D
Sbjct: 43 VKRQSTARTRSFTETNRRTPSVQSKHEFWEDPDDGSDSENEYEGEEEDGIGNDL-DNESD 101
Query: 451 GEMNGRTEGKTSEESDAIDTDLSEECEQVLTPEDLALLDLSQ 492
E + R + T+ +D + +L++E EQ+L PE+ +L ++
Sbjct: 102 WEDDSRVQKLTT--TDNYEEELAKEVEQLLEPEERVILQQNE 141
>At5g27330.1 68418.m03263 expressed protein
Length = 628
Score = 31.5 bits (68), Expect = 2.9
Identities = 37/146 (25%), Positives = 60/146 (41%), Gaps = 10/146 (6%)
Query: 462 SEESDAIDTDLSE-ECEQVLTPEDLALLDLSQCRTKKQYKKRIDSILNAVSEIHSGIPLL 520
SEE + + + E +V E++ L R K+ KKR + I E + L
Sbjct: 185 SEEMNLLKESVVRLEMREVSLGEEVGRLKCENGRLVKERKKREEVIERGNRERSELVESL 244
Query: 521 EEKIAKI-----EAKGLTTKNKMLHTALHSEKLINEERAKKL---NEGLETARRALADLR 572
EEK+ +I E +G+ + + ++ + E KKL NE +E+ + LR
Sbjct: 245 EEKVREIDVLKREIEGVVKEKMEVEMVRRDQREMIVELEKKLGDMNEIVESLTKEREGLR 304
Query: 573 AEPHNNCTKQTDDVQPEVKENIENEN 598
+ K D+V E K E N
Sbjct: 305 GQV-VGLEKSLDEVTEEAKARAEQIN 329
>At5g16030.1 68418.m01874 expressed protein
Length = 339
Score = 31.5 bits (68), Expect = 2.9
Identities = 22/59 (37%), Positives = 31/59 (52%), Gaps = 5/59 (8%)
Query: 372 VDIENKKLLGSLIPTQTFRINRKRKAKEKHDSIGEERETEDEGATQ-INEEKDKPKNKQ 429
VDI N K+ G Q ++ K K +EK D EE E E+E Q ++EE DK + +
Sbjct: 240 VDI-NLKVKGQ---QQDVKLEEKEKEEEKQDMSNEEDEEEEEEEKQDMSEEDDKEEEDE 294
>At3g57150.1 68416.m06363 dyskerin, putative / nucleolar protein
NAP57, putative similar to SP|P40615 Dyskerin (Nucleolar
protein NAP57) {Rattus norvegicus}; contains Pfam
profiles PF01509: TruB family pseudouridylate synthase
(N terminal domain), PF01472: PUA domain; supporting
cDNA gi|8901185|gb|AF234984.2|AF234984
Length = 565
Score = 31.5 bits (68), Expect = 2.9
Identities = 19/69 (27%), Positives = 35/69 (50%), Gaps = 1/69 (1%)
Query: 398 KEKHDSIGEERETEDEGATQINEEKDKPKNKQTLASGDAPDXXXXXXXDNRVDGEMNGRT 457
KEK ++ E +E A+ +E+K K K+K T A+ DA D + + + + +
Sbjct: 497 KEKKKKKDKKEEVIEEVASPKSEKKKKKKSKDTEAAVDAEDESAAEKSEKK-KKKKDKKK 555
Query: 458 EGKTSEESD 466
+ K SE+ +
Sbjct: 556 KNKDSEDDE 564
>At3g16000.1 68416.m02024 matrix-localized MAR DNA-binding
protein-related similar to matrix-localized MAR DNA
binding protein MFP1 GI:1771158 from [Lycopersicon
esculentum]
Length = 726
Score = 31.5 bits (68), Expect = 2.9
Identities = 20/66 (30%), Positives = 34/66 (51%), Gaps = 1/66 (1%)
Query: 521 EEKIAKIEAKGLTTKNKMLHTALHSEKLINEERAKKLNEGLETARRALADLRAEPHN-NC 579
E K A EAK +L +L E+ + E++ KKL E L +A+ + +R++P +
Sbjct: 638 EAKNASKEAKENVEDAHILVMSLGKEREVLEKKVKKLEEDLGSAKGEILRMRSQPDSVKA 697
Query: 580 TKQTDD 585
TD+
Sbjct: 698 VNSTDN 703
>At1g60770.1 68414.m06841 pentatricopeptide (PPR) repeat-containing
protein low similarity to DNA-binding protein [Triticum
aestivum] GI:6958202; contains Pfam profile PF01535: PPR
repeat
Length = 491
Score = 31.5 bits (68), Expect = 2.9
Identities = 24/112 (21%), Positives = 48/112 (42%), Gaps = 2/112 (1%)
Query: 756 ASQLWIAYMAFHLQATEIEKARAVARKALSTICFREEDEKLNVWLALINLENRFGTKESQ 815
+S + + M + + E EK A+ ++ L + NVW+ + N E
Sbjct: 157 SSMSYNSLMTLYTKTGETEKVPAMIQE-LKAENVMPDSYTYNVWMRALAATNDISGVERV 215
Query: 816 QKTLEEALQMNDTFKVHSKLLDIYVDTGKQQEL-SALVDLMLRKYKKDPKTY 866
+ + ++ + +S + IYVD G Q+ AL +L ++ ++D Y
Sbjct: 216 IEEMNRDGRVAPDWTTYSNMASIYVDAGLSQKAEKALQELEMKNTQRDFTAY 267
>At4g24270.2 68417.m03484 RNA recognition motif (RRM)-containing
protein low similarity to tumor-rejection antigen SART3
[Mus musculus] GI:7637845; contains INTERPRO:IPR000504
RNA-binding region RNP-1 (RNA recognition motif) domain
Length = 817
Score = 31.1 bits (67), Expect = 3.9
Identities = 25/96 (26%), Positives = 44/96 (45%), Gaps = 7/96 (7%)
Query: 746 FQRALLANPSASQLWIAYMAFHLQATEIEKARAVARKALSTICFREEDEKLNVWLA-LIN 804
++RA+ P +S LWI Y + + ++ KA A + C D +W L+
Sbjct: 317 YERAVAEYPVSSDLWIDYTVYLDKTLKVGKAITHAYSRATRSCPWTGD----LWARYLLA 372
Query: 805 LENRFGTKESQQKTLEEALQMNDTFKVHSKLLDIYV 840
LE +++ E++LQ TF + LD+Y+
Sbjct: 373 LERGSASEKEIYDVFEKSLQC--TFSSFEEYLDLYL 406
>At4g24270.1 68417.m03483 RNA recognition motif (RRM)-containing
protein low similarity to tumor-rejection antigen SART3
[Mus musculus] GI:7637845; contains INTERPRO:IPR000504
RNA-binding region RNP-1 (RNA recognition motif) domain
Length = 816
Score = 31.1 bits (67), Expect = 3.9
Identities = 25/96 (26%), Positives = 44/96 (45%), Gaps = 7/96 (7%)
Query: 746 FQRALLANPSASQLWIAYMAFHLQATEIEKARAVARKALSTICFREEDEKLNVWLA-LIN 804
++RA+ P +S LWI Y + + ++ KA A + C D +W L+
Sbjct: 317 YERAVAEYPVSSDLWIDYTVYLDKTLKVGKAITHAYSRATRSCPWTGD----LWARYLLA 372
Query: 805 LENRFGTKESQQKTLEEALQMNDTFKVHSKLLDIYV 840
LE +++ E++LQ TF + LD+Y+
Sbjct: 373 LERGSASEKEIYDVFEKSLQC--TFSSFEEYLDLYL 406
>At3g28770.1 68416.m03591 expressed protein
Length = 2081
Score = 31.1 bits (67), Expect = 3.9
Identities = 51/281 (18%), Positives = 111/281 (39%), Gaps = 22/281 (7%)
Query: 376 NKKLLGSLIPTQTFRINRKRKAKEKHDSIGEERETEDEGATQINEE-KDKPKNKQTLASG 434
NK+ I T + + + +K K+K ++ E++ +N E K + NK+
Sbjct: 925 NKEENKDTINTSSKQKGKDKKKKKKESKNSNMKKKEEDKKEYVNNELKKQEDNKKETTKS 984
Query: 435 DAPDXXXXXXXDNRVDGEMNGRTEGKTSEESDAIDTDLSEECEQVLTPEDLALLDLSQCR 494
+ ++++ E E K SE+S + + + E E+ ++ A + + +
Sbjct: 985 E----------NSKLKEENKDNKEKKESEDSASKNREKKEYEEKKSKTKEEAKKEKKKSQ 1034
Query: 495 TKKQYKKRIDSILNAVSEIHSGIPLLEEKIAKIEAKGLTTKNKMLHTALHSEKLINEERA 554
KK+ +K DS E S E + K + K TK K + H K ++
Sbjct: 1035 DKKREEK--DS-----EERKSKKEKEESRDLKAKKKEEETKEKK-ESENHKSK---KKED 1083
Query: 555 KKLNEGLETARRALADLRAEPHNNCTKQTDDVQPEVKENIENENIQXXXXXXXXXXXXXX 614
KK +E ++ ++ + H + + + E +E++N
Sbjct: 1084 KKEHEDNKSMKKEEDKKEKKKHEESKSRKKEEDKKDMEKLEDQNSNKKKEDKNEKKKSQH 1143
Query: 615 XXXXXTEIRDKKRKGTDDVRKTEDSKTDQGRKGRGEPAEKR 655
E K++K ++ +T++ ++ + +K + EK+
Sbjct: 1144 VKLVKKESDKKEKKENEEKSETKEIESSKSQKNEVDKKEKK 1184
Score = 30.3 bits (65), Expect = 6.7
Identities = 39/207 (18%), Positives = 79/207 (38%), Gaps = 5/207 (2%)
Query: 392 NRKRKAKEKHDSIGEERETEDEGATQINEEKDKPKNKQTLASGDAPDXXXXXXXDNRVDG 451
+R KAK+K + E++E+E+ + + ++K+ NK D + +R
Sbjct: 1055 SRDLKAKKKEEETKEKKESENHKSKKKEDKKEHEDNKSMKKEEDKKEKKKHEESKSRKKE 1114
Query: 452 EMNGRTEGKTSEESDAIDTDLSEECEQVLTPEDLALLDLSQCRTKKQYKKRIDSILNAVS 511
E E + S+ D +E+ + L + + K+ +K + +
Sbjct: 1115 EDKKDMEKLEDQNSNKKKEDKNEKKKS--QHVKLVKKESDKKEKKENEEKSETKEIESSK 1172
Query: 512 EIHSGIPLLEEKIAKIEAKGLTTKNKMLHTALHSEKLINEERAKKLNEGLETARRALADL 571
+ + E+K +K + K K K + + + NEE KK E ++
Sbjct: 1173 SQKNEVDKKEKKSSKDQQK---KKEKEMKESEEKKLKKNEEDRKKQTSVEENKKQKETKK 1229
Query: 572 RAEPHNNCTKQTDDVQPEVKENIENEN 598
+ K T KE++E+E+
Sbjct: 1230 EKNKPKDDKKNTTKQSGGKKESMESES 1256
>At3g13210.1 68416.m01653 crooked neck protein, putative / cell
cycle protein, putative similar to Swiss-Prot:P17886
crooked neck protein [Drosophila melanogaster]
Length = 657
Score = 31.1 bits (67), Expect = 3.9
Identities = 20/59 (33%), Positives = 31/59 (52%), Gaps = 3/59 (5%)
Query: 939 YVDMLVKENDIERVRQVMERITSHQLPARKMKVLYKKWIEVEEKIGDEGKAEIIRQRAI 997
Y D +K + R V +R S LP ++ L+ K+I +EEK+G+ A I +R I
Sbjct: 97 YADFEMKNKSVNEARNVWDRAVS-LLP--RVDQLWYKFIHMEEKLGNIAGARQILERWI 152
>At2g11910.2 68415.m01278 expressed protein
Length = 168
Score = 31.1 bits (67), Expect = 3.9
Identities = 29/132 (21%), Positives = 57/132 (43%), Gaps = 10/132 (7%)
Query: 354 NLTEAFH--VGQIVSCTILNVDIENKKLLGSLIPTQTFRIN----RKRKAKEKHDSIGEE 407
++TE+F VG+ ++C +L + L+G + Q + R + +E D+ +
Sbjct: 20 SVTESFLLLVGKNLACLLL---VAESLLIGLVAVDQRLSVKEGYKRGSRIEENKDASDSD 76
Query: 408 RETEDEGATQINEEKDKPKNKQ-TLASGDAPDXXXXXXXDNRVDGEMNGRTEGKTSEESD 466
+ +DE A + ++++D ++ + GD + D +G E EE D
Sbjct: 77 DDDDDEDADEDDDDEDDANDEDFSGGEGDEGEEEADPEDDPVTNGGGGSDDEDDDDEEGD 136
Query: 467 AIDTDLSEECEQ 478
D D E E+
Sbjct: 137 NDDEDEDNEDEE 148
>At2g11910.1 68415.m01277 expressed protein
Length = 168
Score = 31.1 bits (67), Expect = 3.9
Identities = 29/132 (21%), Positives = 57/132 (43%), Gaps = 10/132 (7%)
Query: 354 NLTEAFH--VGQIVSCTILNVDIENKKLLGSLIPTQTFRIN----RKRKAKEKHDSIGEE 407
++TE+F VG+ ++C +L + L+G + Q + R + +E D+ +
Sbjct: 20 SVTESFLLLVGKNLACLLL---VAESLLIGLVAVDQRLSVKEGYKRGSRIEENKDASDSD 76
Query: 408 RETEDEGATQINEEKDKPKNKQ-TLASGDAPDXXXXXXXDNRVDGEMNGRTEGKTSEESD 466
+ +DE A + ++++D ++ + GD + D +G E EE D
Sbjct: 77 DDDDDEDADEDDDDEDDANDEDFSGGEGDEGEEEADPEDDPVTNGGGGSDDEDDDDEEGD 136
Query: 467 AIDTDLSEECEQ 478
D D E E+
Sbjct: 137 NDDEDEDNEDEE 148
>At1g72320.3 68414.m08362 pumilio/Puf RNA-binding domain-containing
protein contains Pfam profile: PF00806 Pumilio-family
RNA binding domains (aka PUM-HD, Pumilio homology
domain) (5 copies)
Length = 731
Score = 31.1 bits (67), Expect = 3.9
Identities = 20/68 (29%), Positives = 38/68 (55%), Gaps = 6/68 (8%)
Query: 372 VDIENKKLLGSLIPTQTFRINRKRKAKEKHDSI-GEERETEDEGATQINEEKDKPK---N 427
++++N + PT F+ +R++ AK+K + GE+R + + T +E DKPK +
Sbjct: 653 IEVKNTRKEIDHHPTSGFKRHREKHAKDKDEPFAGEKRSKQKKNKT--SEATDKPKLAGS 710
Query: 428 KQTLASGD 435
K+ SG+
Sbjct: 711 KRPFLSGE 718
>At1g72320.2 68414.m08361 pumilio/Puf RNA-binding domain-containing
protein contains Pfam profile: PF00806 Pumilio-family
RNA binding domains (aka PUM-HD, Pumilio homology
domain) (5 copies)
Length = 731
Score = 31.1 bits (67), Expect = 3.9
Identities = 20/68 (29%), Positives = 38/68 (55%), Gaps = 6/68 (8%)
Query: 372 VDIENKKLLGSLIPTQTFRINRKRKAKEKHDSI-GEERETEDEGATQINEEKDKPK---N 427
++++N + PT F+ +R++ AK+K + GE+R + + T +E DKPK +
Sbjct: 653 IEVKNTRKEIDHHPTSGFKRHREKHAKDKDEPFAGEKRSKQKKNKT--SEATDKPKLAGS 710
Query: 428 KQTLASGD 435
K+ SG+
Sbjct: 711 KRPFLSGE 718
>At1g72320.1 68414.m08363 pumilio/Puf RNA-binding domain-containing
protein contains Pfam profile: PF00806 Pumilio-family
RNA binding domains (aka PUM-HD, Pumilio homology
domain) (5 copies)
Length = 753
Score = 31.1 bits (67), Expect = 3.9
Identities = 20/68 (29%), Positives = 38/68 (55%), Gaps = 6/68 (8%)
Query: 372 VDIENKKLLGSLIPTQTFRINRKRKAKEKHDSI-GEERETEDEGATQINEEKDKPK---N 427
++++N + PT F+ +R++ AK+K + GE+R + + T +E DKPK +
Sbjct: 675 IEVKNTRKEIDHHPTSGFKRHREKHAKDKDEPFAGEKRSKQKKNKT--SEATDKPKLAGS 732
Query: 428 KQTLASGD 435
K+ SG+
Sbjct: 733 KRPFLSGE 740
>At1g64330.1 68414.m07290 myosin heavy chain-related similar to
myosin heavy chain (GI:1850913) [Entamoeba histolytica];
similar to Intracellular protein transport protein USO1
(Swiss-Prot:P25386) [Saccharomyces cerevisiae]
Length = 555
Score = 31.1 bits (67), Expect = 3.9
Identities = 40/207 (19%), Positives = 88/207 (42%), Gaps = 14/207 (6%)
Query: 398 KEKHDSIGEERETEDEGATQINEEKDKPKNKQTLASGDAPDXXXXXXXDNRVDGEMNGRT 457
KE ++ + ETE + ++ + K + + + A D NR+ G+ N T
Sbjct: 184 KELNEKLEVAGETESDLNQKLEDVKKERDGLEAELASKAKDHESTLEEVNRLQGQKN-ET 242
Query: 458 EGKTSEESDAIDTDLSE--ECEQVLTPEDLALLDLSQ--CRTKKQYKKRIDSILNAVSEI 513
E + E L++ + ++ L ++ A LSQ + +++R +I +
Sbjct: 243 EAELEREKQEKPALLNQINDVQKALLEQEAAYNTLSQEHKQINGLFEEREATIKKLTDDY 302
Query: 514 HSGIPLLEEKIAKIEAKGLTTKNKMLHTALHSEKLINEERAKKLNEGLETARRALADLRA 573
+LEE ++K+E T+ +M T + E L E +E+ R + + +
Sbjct: 303 KQAREMLEEYMSKME----ETERRMQETG--KDVASRESAIVDLEETVESLRNEV-ERKG 355
Query: 574 EPHNNCTKQTDDVQPEVKENIENENIQ 600
+ + ++ ++ EVK + N+ ++
Sbjct: 356 DEIESLMEKMSNI--EVKLRLSNQKLR 380
>At1g29000.1 68414.m03546 heavy-metal-associated domain-containing
protein similar to farnesylated protein ATFP3
[GI:4097547]; contains Pfam profile PF00403:
Heavy-metal-associated domain
Length = 287
Score = 31.1 bits (67), Expect = 3.9
Identities = 15/45 (33%), Positives = 24/45 (53%)
Query: 621 EIRDKKRKGTDDVRKTEDSKTDQGRKGRGEPAEKRRTVNVTEELR 665
E DKK+K +D +K ED K + K + E +K+ EE++
Sbjct: 189 EEEDKKKKEEEDKKKKEDEKKKEEEKKKEEENKKKEGEKKKEEVK 233
>At5g60930.1 68418.m07643 chromosome-associated kinesin, putative
microtubule-associated motor KIF4 , Mus musculus,
PIR:A54803
Length = 1294
Score = 30.7 bits (66), Expect = 5.1
Identities = 18/45 (40%), Positives = 26/45 (57%), Gaps = 1/45 (2%)
Query: 392 NRKRKAKEKHDSIGEERETEDEGATQINEEKDKPKNKQTLASGDA 436
NR KE ++SI E E+ +Q ++EKDK + +Q LAS A
Sbjct: 1095 NRNADGKE-NNSISESEALENGENSQESDEKDKGQQQQVLASRGA 1138
>At5g41770.1 68418.m05086 crooked neck protein, putative / cell
cycle protein, putative similar to Swiss-Prot:P17886
crooked neck protein [Drosophila melanogaster]
Length = 705
Score = 30.7 bits (66), Expect = 5.1
Identities = 23/86 (26%), Positives = 33/86 (38%), Gaps = 3/86 (3%)
Query: 746 FQRALLANPSASQLWIAYMAFHLQATEIEKARAVARKALSTICFREEDEKLNVWLALINL 805
++R L +P W Y E E+ARA+ A+S D +W A I+
Sbjct: 479 YERYLEWSPENCYAWSKYAELERSLVETERARAIFELAISQPAL---DMPELLWKAYIDF 535
Query: 806 ENRFGTKESQQKTLEEALQMNDTFKV 831
E G E + E L +KV
Sbjct: 536 EISEGELERTRALYERLLDRTKHYKV 561
Score = 30.3 bits (65), Expect = 6.7
Identities = 15/59 (25%), Positives = 34/59 (57%), Gaps = 3/59 (5%)
Query: 948 DIERVRQVMERITSHQLPARKMKVLYKKWIEVEEKIGDEGKAE--IIRQRAIEYVEKAK 1004
++ER R + + H +P + + LY+K++ E++ GD+ E I+ +R +Y ++ +
Sbjct: 278 EVERARFIYKFALDH-IPKGRAEDLYRKFVAFEKQYGDKEGIEDAIVGKRRFQYEDEVR 335
>At3g50690.1 68416.m05546 leucine-rich repeat family protein
Length = 447
Score = 30.7 bits (66), Expect = 5.1
Identities = 26/99 (26%), Positives = 47/99 (47%), Gaps = 6/99 (6%)
Query: 386 TQTFRINRKRKAKEKHDSIGEER---ETEDEGATQINEEKDKPKNKQTLASG--DAPDXX 440
++ F + + K +K D+ G ER + ED+ + +EE+++ +++ SG D +
Sbjct: 139 SRVFGLIKTLKYLDKTDAEGNERPESDDEDDEEDEEDEEEEEEGDEEDPGSGEIDGDERA 198
Query: 441 XXXXXDNRVDGEMNGRTEGKTSEESDAIDTDLSEECEQV 479
N ++G + EESDA D D SE+ V
Sbjct: 199 EAPRMSNGHSERVDGVVDVDEDEESDAED-DESEQATGV 236
>At3g02260.1 68416.m00207 auxin transport protein (BIG) nearly
identical to auxin transport protein; BIG [Arabidopsis
thaliana] GI:21779966; contains Pfam profiles PF02207:
Putative zinc finger in N-recognin, PF00569: Zinc finger
ZZ type
Length = 5098
Score = 30.7 bits (66), Expect = 5.1
Identities = 23/95 (24%), Positives = 45/95 (47%), Gaps = 1/95 (1%)
Query: 324 YAIRDYILVSFFNNLMAYVPKTMVSIEPIENLTEAFHVGQIVSCTILNVDIENKKLLGSL 383
Y +R +SF N + + + V I+ ++ L AF+ G+ VS ++ + +
Sbjct: 3098 YCLRHGDFLSFLLNGVFHFAEESV-IQTLKLLNLAFYQGKDVSSSVQKAEATEVVTGSNR 3156
Query: 384 IPTQTFRINRKRKAKEKHDSIGEERETEDEGATQI 418
+Q+ +K+K ++ HDS E+ + EG I
Sbjct: 3157 SGSQSVDSKKKKKGEDGHDSGLEKLYVDMEGVVDI 3191
>At1g06510.1 68414.m00690 expressed protein
Length = 277
Score = 30.7 bits (66), Expect = 5.1
Identities = 22/64 (34%), Positives = 34/64 (53%), Gaps = 1/64 (1%)
Query: 503 IDSILNAVSEIHSGIPLLEEKIAKIEAKGLTTKNKMLHTALHSEKLINEERAKKLNEGLE 562
I SIL VS S + L++K+++IEA+ +T N H +K N + ++ E LE
Sbjct: 199 IGSILKEVSSYESFLENLDQKLSRIEAELVTVVNVASLVLNHEDKPKN-LKVQQTAEILE 257
Query: 563 TARR 566
RR
Sbjct: 258 EIRR 261
>At1g05320.1 68414.m00539 myosin-related similar to non-muscle
myosin II heavy chain (GI:19879404) [Loligo pealei];
ESTs gb|AA042402,gb|ATTS1380 come from this gene
Length = 828
Score = 30.7 bits (66), Expect = 5.1
Identities = 45/205 (21%), Positives = 82/205 (40%), Gaps = 13/205 (6%)
Query: 368 TILNVDIENKKLLGSLIPTQTFRINRKRKAKEKHDSIGEERETEDEGATQINEEKDKPKN 427
T++ + E+ G + + IN+K + D E++ E A Q+++ K K
Sbjct: 22 TVMEKEEEDTIFDGGFVKVEKEGINKKYD--DDDDEKAEKQLKSLEDALQLHDVKHKELT 79
Query: 428 KQTLASGDAPDXXXXXXXDNRVDGEMNGRTEGKTSEESDAIDTDLSEECEQVLTPEDL-- 485
+ A D ++ E R +E+ + + + E E+ L D
Sbjct: 80 EVKEAF-DGLGLELENSRKKMIELEDRIRISALEAEKLEELQKQSASELEEKLKISDERY 138
Query: 486 ----ALLD--LSQCRTKKQYKKRIDSILNAVSEIHSGIPLLEE--KIAKIEAKGLTTKNK 537
ALL LSQ +Q K ++ + VSE+ S + + EE K + I+ + K
Sbjct: 139 SKTDALLSQALSQNSVLEQKLKSLEELSEKVSELKSALIVAEEEGKKSSIQMQEYQEKVS 198
Query: 538 MLHTALHSEKLINEERAKKLNEGLE 562
L ++L+ N E + L L+
Sbjct: 199 KLESSLNQSSARNSELEEDLRIALQ 223
>At5g45990.1 68418.m05656 crooked neck protein, putative / cell
cycle protein, putative similar to Swiss-Prot:P17886
crooked neck protein [Drosophila melanogaster]
Length = 673
Score = 30.3 bits (65), Expect = 6.7
Identities = 23/86 (26%), Positives = 33/86 (38%), Gaps = 3/86 (3%)
Query: 746 FQRALLANPSASQLWIAYMAFHLQATEIEKARAVARKALSTICFREEDEKLNVWLALINL 805
++R L +P W Y F + E E+ARA+ A+S D +W I+
Sbjct: 466 YERFLEWSPENCYAWRNYAEFEISLAETERARAIFELAISQPAL---DMPELLWKTYIDF 522
Query: 806 ENRFGTKESQQKTLEEALQMNDTFKV 831
E G E + E L KV
Sbjct: 523 EISEGEFEKTRALYERLLDRTKHCKV 548
>At5g21222.1 68418.m02532 protein kinase family protein contains
Pfam profile: PF00069 protein kinase domain
Length = 831
Score = 30.3 bits (65), Expect = 6.7
Identities = 20/69 (28%), Positives = 30/69 (43%), Gaps = 2/69 (2%)
Query: 801 ALINLENRFGTKESQQKTLEEALQMN--DTFKVHSKLLDIYVDTGKQQELSALVDLMLRK 858
A+IN + G + K E+ + T + L+ Y GK +E S L+D+MLR
Sbjct: 394 AIINASSESGNLDQAMKIFEKMKESGCKPTASTFNTLIKGYGKIGKLEESSRLLDMMLRD 453
Query: 859 YKKDPKTYT 867
P T
Sbjct: 454 EMLQPNDRT 462
>At4g40020.1 68417.m05666 hypothetical protein
Length = 615
Score = 30.3 bits (65), Expect = 6.7
Identities = 13/41 (31%), Positives = 25/41 (60%)
Query: 390 RINRKRKAKEKHDSIGEERETEDEGATQINEEKDKPKNKQT 430
+I K K +EK ++ E++E++ E +++DK K +QT
Sbjct: 397 KIEEKEKKEEKKENKKEKKESKKEKKEHSEKKEDKEKKEQT 437
>At4g36520.1 68417.m05185 trichohyalin-related low similarity to
SP|Q07283 Trichohyalin {Homo sapiens}
Length = 1400
Score = 30.3 bits (65), Expect = 6.7
Identities = 28/127 (22%), Positives = 46/127 (36%), Gaps = 4/127 (3%)
Query: 537 KMLHTALHSEKLINEERAKKLNEGLETARRALADLRAEPHNNCTKQTDDVQPEVKENIEN 596
K L AL E+ E + K+ E E RRA+ K+ +++ ++KE E
Sbjct: 662 KRLKAALEQEE--KERKIKEAREKAENERRAVEAREKAEQERKMKEQQELELQLKEAFEK 719
Query: 597 ENIQXXXXXXXXXXXXXXXXXXXTEIRDKKRKGTDDVRKTEDSKTDQGRKGRGEPAEKRR 656
E + E R+K+ E ++ +Q K E EK R
Sbjct: 720 E--EENRRMREAFALEQEKERRIKEAREKEENERRIKEAREKAELEQRLKATLEQEEKER 777
Query: 657 TVNVTEE 663
+ +E
Sbjct: 778 QIKERQE 784
>At4g31230.1 68417.m04433 protein kinase family protein contains
Pfam profiles PF00069: Protein kinase domain, PF00582:
universal stress protein family
Length = 764
Score = 30.3 bits (65), Expect = 6.7
Identities = 27/113 (23%), Positives = 44/113 (38%), Gaps = 5/113 (4%)
Query: 353 ENLTEAFHVGQIVSCTILNVDIENKKLLGSLIPTQTFRINRKRKAKE-KHDSIGEERETE 411
E + A G V + + +E K+ + + K KA E + + EER+ E
Sbjct: 325 ERFSSASQGGDDVEAEMRRLKLELKQTMEMYSTACKEALTAKHKATELQRWKLAEERKFE 384
Query: 412 D----EGATQINEEKDKPKNKQTLASGDAPDXXXXXXXDNRVDGEMNGRTEGK 460
+ E A EK+K K+K + + +A RVD E E +
Sbjct: 385 EAKLAEEAALAIAEKEKAKSKAAMEAAEAAQRIADIESRKRVDAETKALKESE 437
>At4g29060.1 68417.m04157 elongation factor Ts family protein
similar to SP|P35019 Elongation factor Ts (EF-Ts)
{Galdieria sulphuraria}; contains Pfam profiles PF00627:
UBA/TS-N domain, PF00889: Elongation factor TS, PF00575:
S1 RNA binding domain
Length = 953
Score = 30.3 bits (65), Expect = 6.7
Identities = 17/72 (23%), Positives = 38/72 (52%), Gaps = 1/72 (1%)
Query: 309 RHDQAVIGKVYTGVIYAIRDY-ILVSFFNNLMAYVPKTMVSIEPIENLTEAFHVGQIVSC 367
++++ V G +TG + AI+ + V F V + +S +++++ +GQ V
Sbjct: 129 KNEELVPGATFTGKVRAIQPFGAFVDFGAFTDGLVHVSQLSDNFVKDVSSVVTIGQEVKV 188
Query: 368 TILNVDIENKKL 379
++ DIE+K++
Sbjct: 189 RLVEADIESKRI 200
>At4g26630.1 68417.m03837 expressed protein
Length = 763
Score = 30.3 bits (65), Expect = 6.7
Identities = 65/298 (21%), Positives = 116/298 (38%), Gaps = 24/298 (8%)
Query: 390 RINRKRKAKEKHDSIGEERETEDEGATQINEEKDKPKNKQTLASGDAPDXXXXXXXDNRV 449
+I + + E D E ++ ED TQ EEK + + A D +
Sbjct: 57 QIKKDDEKAETEDKESEVKKNEDNAETQKMEEKVEVTKDEGQAEATNMDEDADGKKEQTD 116
Query: 450 DGEMNGRTEGKTSEESDAIDTDLSEECEQVLTPEDLALLDLSQCRTKKQYKKRIDSILNA 509
DG T K + ES D + +++ E+ D+ D + K+ + D N
Sbjct: 117 DGVSVEDTVMKENVESK--DNNYAKDDEKETKETDITEADHKKA-GKEDIQHEADK-ANG 172
Query: 510 VSEIHSGIPLLEEKIAKIEAKGLTTKNKMLHTALHSEKLINEERAKKLNEGLETARRALA 569
+ ++G + EE E KG T ++ + ++++ N E K+ + E + +
Sbjct: 173 TKDGNTG-DIKEEGTLVDEDKG-TDMDEKVENGDENKQVENVE-GKEKEDKEENKTKEVE 229
Query: 570 DLRAEPHNNCTKQTDDVQPEVKENIENENIQXXXXXXXXXXXXXXXXXXXTEIR--DKKR 627
+AE +K D+ + EN +NE ++ E KKR
Sbjct: 230 AAKAEVDE--SKVEDEKEGSEDEN-DNEKVESKDAKEDEKEETNDDKEDEKEESKGSKKR 286
Query: 628 -KGTDDVRKT-EDSKTDQGRKG-------RGEPAEKRRTVNVTEELRPVLHAPSAKDF 676
KGT K E +KT++ +K P +R++V E L ++ S+K+F
Sbjct: 287 GKGTSSGGKVREKNKTEEVKKDAEPRTPFSDRPVRERKSV---ERLVALIDKDSSKEF 341
>At3g49240.1 68416.m05381 pentatricopeptide (PPR) repeat-containing
protein contains Pfam profile PF01535: PPR repeat
Length = 629
Score = 30.3 bits (65), Expect = 6.7
Identities = 15/61 (24%), Positives = 29/61 (47%), Gaps = 1/61 (1%)
Query: 806 ENRFGTKESQQKTLEEALQMNDTFKVHSKLLDIYVDTGKQQELSALVDLMLRKYKKDPKT 865
E + + KT+ E+ + V+++L D + GK + + D+M+ K K D +
Sbjct: 433 EGKIDEGAAYYKTMVES-NLRPNLAVYNRLQDQLIKAGKLDDAKSFFDMMVSKLKMDDEA 491
Query: 866 Y 866
Y
Sbjct: 492 Y 492
>At1g33230.1 68414.m04106 expressed protein
Length = 347
Score = 30.3 bits (65), Expect = 6.7
Identities = 21/80 (26%), Positives = 39/80 (48%), Gaps = 6/80 (7%)
Query: 497 KQYKKRIDSILNAVSEIHSGIPLL------EEKIAKIEAKGLTTKNKMLHTALHSEKLIN 550
++ ++ + I+ V E+H EE + A + + + LH+ L S+K ++
Sbjct: 2 EEVEEEVRRIVEQVKELHDSSTSFVSSSSQEELSLRNRASVVDSSIRRLHSTLASDKHLD 61
Query: 551 EERAKKLNEGLETARRALAD 570
+ +KL E L+ AR LAD
Sbjct: 62 PKLFEKLEEDLQRARCMLAD 81
>At5g56210.1 68418.m07014 expressed protein ; expression supported
by MPSS
Length = 509
Score = 29.9 bits (64), Expect = 8.9
Identities = 20/66 (30%), Positives = 34/66 (51%), Gaps = 5/66 (7%)
Query: 120 EQERKYKDGDIIEEAQVLKITGRSVHMKLDHGCTAVMSIKRID--IEEEMTDEEVIAKSY 177
E+ Y GD +EE+Q+ K G S + LD AV S + + +++E+ + + K
Sbjct: 246 EETEDYSQGDCVEESQI-KSNGSSDN--LDPLIVAVNSFQTLQEALQKELQKFQELGKEE 302
Query: 178 PVGSTH 183
P+ S H
Sbjct: 303 PITSLH 308
>At5g48600.1 68418.m06011 structural maintenance of chromosomes
(SMC) family protein similar to SP|P50532 Chromosome
assembly protein XCAP-C {Xenopus laevis}; contains Pfam
profiles PF02483: SMC family C-terminal domain, PF02463:
RecF/RecN/SMC N terminal domain
Length = 1241
Score = 29.9 bits (64), Expect = 8.9
Identities = 34/121 (28%), Positives = 55/121 (45%), Gaps = 10/121 (8%)
Query: 458 EGKTSEESDAIDTDLSEECEQVLTPEDLALLDLSQCRTKKQYKKRIDS-ILNAVSEIHSG 516
E + ++D ID +E +++++ E+ + +L + KQ K ++ + I NA E G
Sbjct: 788 EAASQPKTDEIDR--LKELKKIISKEEKEIENLE--KGSKQLKDKLQTNIENAGGEKLKG 843
Query: 517 IPLLEEKIAKIEAKGLTTKNKMLHTALHSEKLINEERAKKLNEGLETARRALADLRAEPH 576
EKI K T N+ ++KLI KKL +G+E A R L E
Sbjct: 844 QKAKVEKIQTDIDKNNTEINRCNVQIETNQKLI-----KKLTKGIEEATREKERLEGEKE 898
Query: 577 N 577
N
Sbjct: 899 N 899
>At5g25630.1 68418.m03050 pentatricopeptide (PPR) repeat-containing
protein contains Pfam profile PF01535: PPR repeat
Length = 574
Score = 29.9 bits (64), Expect = 8.9
Identities = 27/94 (28%), Positives = 44/94 (46%), Gaps = 6/94 (6%)
Query: 801 ALINLENRFGTKESQQKTL--EEALQMNDTFKVHSKLLDIYVDTGKQQELSALVDLMLRK 858
A+IN + G E + L + L +N T ++ L+ Y GK + S L+DLML +
Sbjct: 120 AVINAFSESGNMEDAVQALLKMKELGLNPTTSTYNTLIKGYGIAGKPERSSELLDLMLEE 179
Query: 859 YKKDP----KTYTLCGTACYKLNLKEKARYVMQK 888
D +T+ + A K E+A V++K
Sbjct: 180 GNVDVGPNIRTFNVLVQAWCKKKKVEEAWEVVKK 213
>At3g26580.1 68416.m03318 expressed protein
Length = 350
Score = 29.9 bits (64), Expect = 8.9
Identities = 17/39 (43%), Positives = 25/39 (64%), Gaps = 1/39 (2%)
Query: 393 RKRKAKEKHDSIGEERETEDEGATQINEEKDKPKNKQTL 431
RKR+AKE HD+ ER+ E E +I+EE D + K+ +
Sbjct: 117 RKRRAKEFHDTKELERKAE-ELQYKIDEEGDDSEEKKRM 154
>At3g09620.1 68416.m01141 DEAD/DEAH box helicase, putative similar
to RNA helicase GB:A57514 GI:897915 from [Rattus
norvegicus]; contains Pfam profiles PF00270: DEAD/DEAH
box helicase, PF00271: Helicase conserved C-terminal
domain
Length = 989
Score = 29.9 bits (64), Expect = 8.9
Identities = 17/44 (38%), Positives = 25/44 (56%), Gaps = 2/44 (4%)
Query: 624 DKKRKGTDDV-RKTEDSKTDQGRKGRGEPAEK-RRTVNVTEELR 665
++ R G DDV +KT D + + +K E EK RR V +EL+
Sbjct: 132 ERSRHGDDDVEKKTRDEQVEDEQKQLAEEVEKRRRRVQEWQELK 175
>At2g18540.1 68415.m02160 cupin family protein contains Pfam profile
PF00190: Cupin
Length = 707
Score = 29.9 bits (64), Expect = 8.9
Identities = 41/205 (20%), Positives = 77/205 (37%), Gaps = 6/205 (2%)
Query: 393 RKRKAKEKHDSIG--EERETEDEGATQINEEKDKPKNKQTLASGDAPDXXXXXXXDNRVD 450
RK++ +E + EERE E+E A + EE+ + + ++ + R
Sbjct: 506 RKKREEEAEQARKREEEREKEEEMAKKREEERQRKEREEVERKRREEQERKRREEEARKR 565
Query: 451 GEMNGRTEGKTSEESDAIDTDLSEECEQVLTPEDLALLDLSQCRTKKQYKKRIDSILNAV 510
E R E EE E+ + E + + ++Q +++ +
Sbjct: 566 EEERKREEEMAKRREQERQRKEREEVERKIREEQERKREEEMAKRREQERQKKEREEMER 625
Query: 511 SEIHSGIPLLEEKIAKIEAKGLTTKNKM-LHTALHSEKLINEERAKKLNEGLETARRALA 569
+ EE++AKI + K + + E+ + E +K E E A+RA
Sbjct: 626 KKREEEARKREEEMAKIREEERQRKEREDVERKRREEEAMRREEERKREE--EAAKRAEE 683
Query: 570 DLRAEPHNNCTKQTDDVQPEVKENI 594
+ R + K+ QP+ E I
Sbjct: 684 ERRKKEEEE-EKRRWPPQPKPPEEI 707
>At2g12875.1 68415.m01402 hypothetical protein
Length = 325
Score = 29.9 bits (64), Expect = 8.9
Identities = 21/85 (24%), Positives = 38/85 (44%), Gaps = 6/85 (7%)
Query: 398 KEKHDSIGEERETEDEGATQINEEKDKPKNKQTLASGDAPDXXXXXXXDNRVDGEMNGRT 457
++K+D EE+ +DE +EK + + + + D D+ E +
Sbjct: 112 EDKYDKNEEEKSEKDE------QEKSEEEESEEEEKEEGNDDGEESSNDSTTTEEPSSTE 165
Query: 458 EGKTSEESDAIDTDLSEECEQVLTP 482
E +SE++ AI+ +EE LTP
Sbjct: 166 EPSSSEQNKAIEGGGTEEPILALTP 190
>At1g03770.1 68414.m00357 zinc finger (C3HC4-type RING finger)
family protein low similarity to polycomb-M33
interacting protein Ring1B [Mus musculus] GI:2239142;
contains Pfam profile PF00097: Zinc finger, C3HC4 type
(RING finger)
Length = 427
Score = 29.9 bits (64), Expect = 8.9
Identities = 22/89 (24%), Positives = 34/89 (38%), Gaps = 1/89 (1%)
Query: 397 AKEKHDSIGEERETEDEGATQINEEKDKPKNKQTLASGDAPDXXXXXXXDNRVDGEMNGR 456
A+E+ D +G E E + +E+D K + SGD D + D E G
Sbjct: 10 AEEEDDQLGRNSEAERFNPEAVEKEEDPDKMDEKDESGDEEDDVKRDQVEAE-DEEALGE 68
Query: 457 TEGKTSEESDAIDTDLSEECEQVLTPEDL 485
E + +LSE V+ D+
Sbjct: 69 EEDSKERSQSSSAGELSESEYMVVDLADI 97
Database: arabidopsis
Posted date: Oct 3, 2007 3:31 PM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.315 0.132 0.369
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,855,361
Number of Sequences: 28952
Number of extensions: 848436
Number of successful extensions: 3626
Number of sequences better than 10.0: 68
Number of HSP's better than 10.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 56
Number of HSP's that attempted gapping in prelim test: 3435
Number of HSP's gapped (non-prelim): 219
length of query: 1005
length of database: 12,070,560
effective HSP length: 88
effective length of query: 917
effective length of database: 9,522,784
effective search space: 8732392928
effective search space used: 8732392928
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)
S2: 64 (29.9 bits)
- SilkBase 1999-2023 -