GeneModel BLAST Result against bee

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000757-TA|BGIBMGA000757-PA|IPR003029|RNA binding S1,
IPR013026|Tetratricopeptide region, IPR003107|RNA-processing protein,
HAT helix
         (1005 letters)

Database: bee 
           429 sequences; 140,377 total letters

Searching.....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ232888-1|ABB36783.1|  499|Apis mellifera cytochrome P450 monoo...    25   3.1  
DQ026038-1|AAY87897.1|  520|Apis mellifera nicotinic acetylcholi...    24   7.1  
AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.             24   7.1  
DQ667181-1|ABG75733.1|  445|Apis mellifera GABA-gated chloride c...    23   9.4  

>DQ232888-1|ABB36783.1|  499|Apis mellifera cytochrome P450
           monooxygenase protein.
          Length = 499

 Score = 25.0 bits (52), Expect = 3.1
 Identities = 15/41 (36%), Positives = 20/41 (48%), Gaps = 2/41 (4%)

Query: 329 YILVSFFNNLMAYVPKTMVSIEPIE--NLTEAFHVGQIVSC 367
           Y+++    NL  Y+ K +   EPIE   LT  F    I SC
Sbjct: 149 YLIIECSLNLETYLDKLIEKNEPIECRELTARFTTDVIGSC 189


>DQ026038-1|AAY87897.1|  520|Apis mellifera nicotinic acetylcholine
           receptor beta1subunit protein.
          Length = 520

 Score = 23.8 bits (49), Expect = 7.1
 Identities = 10/30 (33%), Positives = 19/30 (63%), Gaps = 1/30 (3%)

Query: 349 IEPIENLTEAFHVG-QIVSCTILNVDIENK 377
           I P++N+TE  HV   +    ++NV+ +N+
Sbjct: 42  IRPVQNMTEKVHVNFGLAFVQLINVNEKNQ 71


>AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.
          Length = 1598

 Score = 23.8 bits (49), Expect = 7.1
 Identities = 14/40 (35%), Positives = 19/40 (47%), Gaps = 1/40 (2%)

Query: 384 IPTQTFRINRKRKAKEKHD-SIGEERETEDEGATQINEEK 422
           IPT+  R  R+   +   D    EE E E++G  Q   EK
Sbjct: 261 IPTRRLRKRRQNDGEGADDRDDDEENEEEEDGRGQSEAEK 300


>DQ667181-1|ABG75733.1|  445|Apis mellifera GABA-gated chloride
           channel protein.
          Length = 445

 Score = 23.4 bits (48), Expect = 9.4
 Identities = 11/33 (33%), Positives = 18/33 (54%)

Query: 187 VLNYNLSDYFYSVTDDPSVVNEKYFTMEQLSVG 219
           ++++ L  YF     DP +  +K   +E LSVG
Sbjct: 54  LMDFTLDFYFRQFWTDPRLAFKKRTGVETLSVG 86


  Database: bee
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 140,377
  Number of sequences in database:  429
  
Lambda     K      H
   0.315    0.132    0.369 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 247,184
Number of Sequences: 429
Number of extensions: 9924
Number of successful extensions: 24
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 23
Number of HSP's gapped (non-prelim): 4
length of query: 1005
length of database: 140,377
effective HSP length: 65
effective length of query: 940
effective length of database: 112,492
effective search space: 105742480
effective search space used: 105742480
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)
S2: 48 (23.4 bits)