Silkworm BLAST Result against spombe

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000756-TA|BGIBMGA000756-PA|IPR003029|RNA binding S1,
IPR008994|Nucleic acid-binding, OB-fold
         (250 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC1183.07 |||U3 snoRNP-associated protein Rrp5|Schizosaccharom...    79   6e-16
SPCC645.08c |snd1||RNA-binding protein Snd1|Schizosaccharomyces ...    29   0.85 
SPBC4.03c |||COPII-coated vesicle component Sfb3 |Schizosaccharo...    27   2.0  
SPBP23A10.04 |apc2||anaphase-promoting complex subunit Apc2 |Sch...    27   2.6  
SPCC1672.11c |||P-type ATPase |Schizosaccharomyces pombe|chr 3||...    27   3.4  
SPCC338.17c |rad21||kleisin|Schizosaccharomyces pombe|chr 3|||Ma...    27   3.4  
SPAC15A10.16 |bud6|aip3, fat1, SPAC15E1.01|actin interacting pro...    27   3.4  
SPMIT.07 |atp6||F0-ATPase subunit 6|Schizosaccharomyces pombe|ch...    26   4.5  
SPCC736.06 |||aspartate-tRNA ligase|Schizosaccharomyces pombe|ch...    26   6.0  
SPAPB17E12.10c |||SAM-dependent methyltransferase|Schizosaccharo...    25   7.9  

>SPCC1183.07 |||U3 snoRNP-associated protein
           Rrp5|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1690

 Score = 79.0 bits (186), Expect = 6e-16
 Identities = 53/160 (33%), Positives = 81/160 (50%), Gaps = 20/160 (12%)

Query: 71  LSSKSLRPGINLLGRVIHVSDVKIKVSMPCKLLGNVMACHISESYNKLLEAY-------- 122
           L  K++ PG  +LG++  ++ + + VS+P  L G V   +IS+  +  L++         
Sbjct: 101 LRYKNITPGSLILGQIAQINTLDLAVSLPNCLTGYVPITNISDKLSDRLDSIDNHAEDNA 160

Query: 123 ---VEDKTEKVRELSQMFKPGQYIAVSVVELAPGNTM--------LTTMPQHVN-SGKRH 170
               ED   ++ +L  ++K GQ++ VSV  L   NT         L+  PQ  N S    
Sbjct: 161 ATEEEDGLNQIPDLMDLYKVGQWVRVSVTALGSENTTKTGKRHIELSLKPQDANGSAPEA 220

Query: 171 TEIKKGAIFQAAVSSVEDHGYVMDLGIPNTTAFLPKKDAN 210
            +   G++ QA VSS+EDHG V D+GI N T FL KK  N
Sbjct: 221 ADFVAGSMIQAVVSSIEDHGIVFDIGINNYTGFLSKKHIN 260



 Score = 31.5 bits (68), Expect = 0.12
 Identities = 28/124 (22%), Positives = 58/124 (46%), Gaps = 5/124 (4%)

Query: 74   KSLRPGINLLGRVIHVSDVKIKVSMPCKLLGNVMACHISESYNKLLEA-YVEDKTEKVRE 132
            ++L PG  L+G+V +V++    + +P  + G V    + + Y+ L E  +  +    V  
Sbjct: 1048 ENLTPGSRLVGKVTNVNEAGAILQLPGHMSGRVSRIDMFDDYDILPETKFTRNNLVGVCV 1107

Query: 133  LSQMFKPGQYIAVSVVELAPGNTMLTTMPQHVNSGKRHTEIKKGAIFQAAVSSVEDHGYV 192
            LS +  P + +A+S       +  +    + +NS     ++K G I +  V +V + G  
Sbjct: 1108 LS-VDVPNRKVALSARNSRTQSQPVEIKDKEINS---VDDLKIGDICRGFVCNVANQGLF 1163

Query: 193  MDLG 196
            + +G
Sbjct: 1164 VTIG 1167


>SPCC645.08c |snd1||RNA-binding protein Snd1|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 878

 Score = 28.7 bits (61), Expect = 0.85
 Identities = 20/61 (32%), Positives = 31/61 (50%), Gaps = 3/61 (4%)

Query: 53  DEAQDYLKTHKLNNNLIFLSSKSLRP-GINLLGRVIHVSDVKIKVSMPCKLLGNVMACHI 111
           DEA+ ++ T  L  N++ +    L P G++ LG V+H +   I   +    LG V   HI
Sbjct: 227 DEAKQFVVTRLLQRNVV-IELLDLAPNGVSFLGNVLHPAG-NIATFLLSSGLGRVADNHI 284

Query: 112 S 112
           S
Sbjct: 285 S 285


>SPBC4.03c |||COPII-coated vesicle component Sfb3
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 891

 Score = 27.5 bits (58), Expect = 2.0
 Identities = 24/123 (19%), Positives = 54/123 (43%), Gaps = 5/123 (4%)

Query: 105 NVMACHISESYNKLLEAYVEDKTEKVRELSQMFKPGQYIAVSVVELAPGNTMLTTMPQHV 164
           N+ A  + ++  +L+E  V+  +   +  +    PGQ +    + L P   +       +
Sbjct: 641 NIAAGSLKDTSVRLVEGVVKILSSYRKVAANRLTPGQLVLPKNLVLLPILILAVLKSSAI 700

Query: 165 NSGKRHTEIKKGAIFQAAVSSVEDHGYVMDLGIPNTTAF--LPKKDANPEIDLGKSVNLN 222
            SG  H++I+   + +   + +++   +++L  PN  A   L   D  P+ +    + +N
Sbjct: 701 RSGSIHSDIRVSQLREVRAAPIQE--LMLNL-YPNIYALHQLQPTDCLPDPENTGCLPIN 757

Query: 223 HPL 225
            PL
Sbjct: 758 MPL 760


>SPBP23A10.04 |apc2||anaphase-promoting complex subunit Apc2
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 681

 Score = 27.1 bits (57), Expect = 2.6
 Identities = 15/53 (28%), Positives = 23/53 (43%)

Query: 110 HISESYNKLLEAYVEDKTEKVRELSQMFKPGQYIAVSVVELAPGNTMLTTMPQ 162
           H+     K L+AY E+  E+ R+   +F P        +EL      LT  P+
Sbjct: 477 HLPGPLKKELDAYAEEYRERKRKRELVFLPNLGSVELEIELEDRTLTLTVTPE 529


>SPCC1672.11c |||P-type ATPase |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1315

 Score = 26.6 bits (56), Expect = 3.4
 Identities = 12/30 (40%), Positives = 17/30 (56%)

Query: 52  SDEAQDYLKTHKLNNNLIFLSSKSLRPGIN 81
           +DEA   L    + NN IFL   +LRP ++
Sbjct: 911 ADEASRQLVWQAIENNEIFLDPHTLRPNVD 940


>SPCC338.17c |rad21||kleisin|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 628

 Score = 26.6 bits (56), Expect = 3.4
 Identities = 15/55 (27%), Positives = 25/55 (45%), Gaps = 1/55 (1%)

Query: 87  IHVSDVKIKVSMPCKLLGNVMACHISESYNKLLEAYVEDKTEKVRELSQMFKPGQ 141
           +H    +    M  +L G +M   +   Y++     +ED TE +  L   F+PGQ
Sbjct: 41  VHAIVTEETAPMALRLSGQLML-GVVRIYSRKARYLLEDCTEALMRLKMSFQPGQ 94


>SPAC15A10.16 |bud6|aip3, fat1, SPAC15E1.01|actin interacting protein
            3 homolog Bud6|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1385

 Score = 26.6 bits (56), Expect = 3.4
 Identities = 12/26 (46%), Positives = 17/26 (65%), Gaps = 1/26 (3%)

Query: 212  EIDLGKSVNL-NHPLKNAPMRTPKPI 236
            EID G  V+  N  L+ +P+ TPKP+
Sbjct: 1273 EIDYGSQVDTENFMLERSPLATPKPL 1298


>SPMIT.07 |atp6||F0-ATPase subunit 6|Schizosaccharomyces pombe|chr
           mitochondrial|||Manual
          Length = 257

 Score = 26.2 bits (55), Expect = 4.5
 Identities = 18/56 (32%), Positives = 30/56 (53%)

Query: 59  LKTHKLNNNLIFLSSKSLRPGINLLGRVIHVSDVKIKVSMPCKLLGNVMACHISES 114
           L+ HK     +FL S +  P I LL  +  VS +   +S+  +L  N++A H++ S
Sbjct: 142 LQQHKAKVFGLFLPSGTPTPLIPLLVLIEFVSYIARGLSLGIRLGANIIAGHLTMS 197


>SPCC736.06 |||aspartate-tRNA ligase|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 611

 Score = 25.8 bits (54), Expect = 6.0
 Identities = 13/38 (34%), Positives = 21/38 (55%)

Query: 194 DLGIPNTTAFLPKKDANPEIDLGKSVNLNHPLKNAPMR 231
           +L + N T+ LPK+D     ++    +L+H L NA  R
Sbjct: 312 ELPLKNITSLLPKQDPLISTEILVYNDLSHSLSNAESR 349


>SPAPB17E12.10c |||SAM-dependent
           methyltransferase|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 301

 Score = 25.4 bits (53), Expect = 7.9
 Identities = 12/30 (40%), Positives = 16/30 (53%)

Query: 114 SYNKLLEAYVEDKTEKVRELSQMFKPGQYI 143
           S  K  E   E   EK+ +  Q+FKPGQ +
Sbjct: 50  SLRKSAETANEKFIEKINKEHQLFKPGQIV 79


  Database: spombe
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.315    0.133    0.382 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,115,117
Number of Sequences: 5004
Number of extensions: 44289
Number of successful extensions: 100
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 89
Number of HSP's gapped (non-prelim): 11
length of query: 250
length of database: 2,362,478
effective HSP length: 71
effective length of query: 179
effective length of database: 2,007,194
effective search space: 359287726
effective search space used: 359287726
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (22.0 bits)
S2: 53 (25.4 bits)