BLASTP 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= BGIBMGA000756-TA|BGIBMGA000756-PA|IPR003029|RNA binding S1, IPR008994|Nucleic acid-binding, OB-fold (250 letters) Database: human 224,733 sequences; 73,234,838 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value D80007-1|BAA11502.1| 1884|Homo sapiens KIAA0185 protein. 87 7e-17 BC111040-1|AAI11041.1| 1444|Homo sapiens PDCD11 protein protein. 87 7e-17 BC080560-1|AAH80560.1| 1434|Homo sapiens PDCD11 protein protein. 87 7e-17 BC064486-1|AAH64486.1| 1434|Homo sapiens Unknown (protein for IM... 87 7e-17 BC049838-1|AAH49838.1| 1436|Homo sapiens PDCD11 protein protein. 87 7e-17 AL603983-1|CAI15102.1| 1871|Homo sapiens programmed cell death 1... 87 7e-17 AL591408-6|CAI16749.1| 1871|Homo sapiens programmed cell death 1... 87 7e-17 AL139339-5|CAH71487.1| 1871|Homo sapiens programmed cell death 1... 87 7e-17 >D80007-1|BAA11502.1| 1884|Homo sapiens KIAA0185 protein. Length = 1884 Score = 86.6 bits (205), Expect = 7e-17 Identities = 64/219 (29%), Positives = 103/219 (47%), Gaps = 17/219 (7%) Query: 1 MADAEEYFPRGGK----KPTGAHFKQS---GNFLGVXXXXXXXXXXXXXXSEGDDGYLSD 53 MA+ EE FPRGG KP A F+QS N + L Sbjct: 14 MANLEESFPRGGTRKIHKPEKA-FQQSVEQDNLFDISTEEGSTKRKKSQKGPAKTKKLKI 72 Query: 54 EAQDYLKTHKLNNNLIFLSSKSLRPGINLLGRVIHVSDVKIKVSMPCKLLGNVMACHISE 113 E ++ K+ + LS +SL G+ +LG V V+++++ +S+P L G V I + Sbjct: 73 EKRESSKSAR--EKFEILSVESLCEGMRILGCVKEVNELELVISLPNGLQGFVQVTEICD 130 Query: 114 SYNKLLEAYV--EDKTEKVRELSQMFKPGQYI-----AVSVVELAPGNTMLTTMPQHVNS 166 +Y K L V E + + L ++F PG + ++ + + + L+ P++VN Sbjct: 131 AYTKKLNEQVTQEQPLKDLLHLPELFSPGMLVRCVVSSLGITDRGKKSVKLSLNPKNVNR 190 Query: 167 GKRHTEIKKGAIFQAAVSSVEDHGYVMDLGIPNTTAFLP 205 +K G + VSS+EDHGY++D+G+ T AFLP Sbjct: 191 VLSAEALKPGMLLTGTVSSLEDHGYLVDIGVDGTRAFLP 229 Score = 36.3 bits (80), Expect = 0.10 Identities = 34/123 (27%), Positives = 58/123 (47%), Gaps = 7/123 (5%) Query: 76 LRPGINLLGRVIHVSDVK-IKVSMPCKLLGNVMACHISESYNKL-LEAYVEDKTEKVREL 133 L G +GRV+ V+ + + VS P +G V H+S+SY++ LE +V K + L Sbjct: 1240 LEEGEVAMGRVVKVTPNEGLTVSFPFGKIGTVSIFHMSDSYSETPLEDFVPQKVVRCYIL 1299 Query: 134 SQMFKPGQYIAVSVVELAPGNTMLTTMPQHVNSGKRHTEIKKGAIFQAAVSSVEDHGYVM 193 S +++ P P+ +NS + +IK+G + + V S++ HG Sbjct: 1300 STADNV-LTLSLRSSRTNPETKSKVEDPE-INSIQ---DIKEGQLLRGYVGSIQPHGVFF 1354 Query: 194 DLG 196 LG Sbjct: 1355 RLG 1357 >BC111040-1|AAI11041.1| 1444|Homo sapiens PDCD11 protein protein. Length = 1444 Score = 86.6 bits (205), Expect = 7e-17 Identities = 64/219 (29%), Positives = 103/219 (47%), Gaps = 17/219 (7%) Query: 1 MADAEEYFPRGGK----KPTGAHFKQS---GNFLGVXXXXXXXXXXXXXXSEGDDGYLSD 53 MA+ EE FPRGG KP A F+QS N + L Sbjct: 1 MANLEESFPRGGTRKIHKPEKA-FQQSVEQDNLFDISTEEGSTKRKKSQKGPAKTKKLKI 59 Query: 54 EAQDYLKTHKLNNNLIFLSSKSLRPGINLLGRVIHVSDVKIKVSMPCKLLGNVMACHISE 113 E ++ K+ + LS +SL G+ +LG V V+++++ +S+P L G V I + Sbjct: 60 EKRESSKSAR--EKFEILSVESLCEGMRILGCVKEVNELELVISLPNGLQGFVQVTEICD 117 Query: 114 SYNKLLEAYV--EDKTEKVRELSQMFKPGQYI-----AVSVVELAPGNTMLTTMPQHVNS 166 +Y K L V E + + L ++F PG + ++ + + + L+ P++VN Sbjct: 118 AYTKKLNEQVTQEQPLKDLLHLPELFSPGMLVRCVVSSLGITDRGKKSVKLSLNPKNVNR 177 Query: 167 GKRHTEIKKGAIFQAAVSSVEDHGYVMDLGIPNTTAFLP 205 +K G + VSS+EDHGY++D+G+ T AFLP Sbjct: 178 VLSAEALKPGMLLTGTVSSLEDHGYLVDIGVDGTRAFLP 216 Score = 36.3 bits (80), Expect = 0.10 Identities = 34/123 (27%), Positives = 58/123 (47%), Gaps = 7/123 (5%) Query: 76 LRPGINLLGRVIHVSDVK-IKVSMPCKLLGNVMACHISESYNKL-LEAYVEDKTEKVREL 133 L G +GRV+ V+ + + VS P +G V H+S+SY++ LE +V K + L Sbjct: 1227 LEEGEVAMGRVVKVTPNEGLTVSFPFGKIGTVSIFHMSDSYSETPLEDFVPQKVVRCYIL 1286 Query: 134 SQMFKPGQYIAVSVVELAPGNTMLTTMPQHVNSGKRHTEIKKGAIFQAAVSSVEDHGYVM 193 S +++ P P+ +NS + +IK+G + + V S++ HG Sbjct: 1287 STADNV-LTLSLRSSRTNPETKSKVEDPE-INSIQ---DIKEGQLLRGYVGSIQPHGVFF 1341 Query: 194 DLG 196 LG Sbjct: 1342 RLG 1344 >BC080560-1|AAH80560.1| 1434|Homo sapiens PDCD11 protein protein. Length = 1434 Score = 86.6 bits (205), Expect = 7e-17 Identities = 64/219 (29%), Positives = 103/219 (47%), Gaps = 17/219 (7%) Query: 1 MADAEEYFPRGGK----KPTGAHFKQS---GNFLGVXXXXXXXXXXXXXXSEGDDGYLSD 53 MA+ EE FPRGG KP A F+QS N + L Sbjct: 1 MANLEESFPRGGTRKIHKPEKA-FQQSVEQDNLFDISTEEGSTKRKKSQKGPAKTKKLKI 59 Query: 54 EAQDYLKTHKLNNNLIFLSSKSLRPGINLLGRVIHVSDVKIKVSMPCKLLGNVMACHISE 113 E ++ K+ + LS +SL G+ +LG V V+++++ +S+P L G V I + Sbjct: 60 EKRESSKSAR--EKFEILSVESLCEGMRILGCVKEVNELELVISLPNGLQGFVQVTEICD 117 Query: 114 SYNKLLEAYV--EDKTEKVRELSQMFKPGQYI-----AVSVVELAPGNTMLTTMPQHVNS 166 +Y K L V E + + L ++F PG + ++ + + + L+ P++VN Sbjct: 118 AYTKKLNEQVTQEQPLKDLLHLPELFSPGMLVRCVVSSLGITDRGKKSVKLSLNPKNVNR 177 Query: 167 GKRHTEIKKGAIFQAAVSSVEDHGYVMDLGIPNTTAFLP 205 +K G + VSS+EDHGY++D+G+ T AFLP Sbjct: 178 VLSAEALKPGMLLTGTVSSLEDHGYLVDIGVDGTRAFLP 216 Score = 36.3 bits (80), Expect = 0.10 Identities = 34/123 (27%), Positives = 58/123 (47%), Gaps = 7/123 (5%) Query: 76 LRPGINLLGRVIHVSDVK-IKVSMPCKLLGNVMACHISESYNKL-LEAYVEDKTEKVREL 133 L G +GRV+ V+ + + VS P +G V H+S+SY++ LE +V K + L Sbjct: 1227 LEEGEVAMGRVVKVTPNEGLTVSFPFGKIGTVSIFHMSDSYSETPLEDFVPQKVVRCYIL 1286 Query: 134 SQMFKPGQYIAVSVVELAPGNTMLTTMPQHVNSGKRHTEIKKGAIFQAAVSSVEDHGYVM 193 S +++ P P+ +NS + +IK+G + + V S++ HG Sbjct: 1287 STADNV-LTLSLRSSRTNPETKSKVEDPE-INSIQ---DIKEGQLLRGYVGSIQPHGVFF 1341 Query: 194 DLG 196 LG Sbjct: 1342 RLG 1344 >BC064486-1|AAH64486.1| 1434|Homo sapiens Unknown (protein for IMAGE:5930738) protein. Length = 1434 Score = 86.6 bits (205), Expect = 7e-17 Identities = 64/219 (29%), Positives = 103/219 (47%), Gaps = 17/219 (7%) Query: 1 MADAEEYFPRGGK----KPTGAHFKQS---GNFLGVXXXXXXXXXXXXXXSEGDDGYLSD 53 MA+ EE FPRGG KP A F+QS N + L Sbjct: 1 MANLEESFPRGGTRKIHKPEKA-FQQSVEQDNLFDISTEEGSTKRKKSQKGPAKTKKLKI 59 Query: 54 EAQDYLKTHKLNNNLIFLSSKSLRPGINLLGRVIHVSDVKIKVSMPCKLLGNVMACHISE 113 E ++ K+ + LS +SL G+ +LG V V+++++ +S+P L G V I + Sbjct: 60 EKRESSKSAR--EKFEILSVESLCEGMRILGCVKEVNELELVISLPNGLQGFVQVTEICD 117 Query: 114 SYNKLLEAYV--EDKTEKVRELSQMFKPGQYI-----AVSVVELAPGNTMLTTMPQHVNS 166 +Y K L V E + + L ++F PG + ++ + + + L+ P++VN Sbjct: 118 AYTKKLNEQVTQEQPLKDLLHLPELFSPGMLVRCVVSSLGITDRGKKSVKLSLNPKNVNR 177 Query: 167 GKRHTEIKKGAIFQAAVSSVEDHGYVMDLGIPNTTAFLP 205 +K G + VSS+EDHGY++D+G+ T AFLP Sbjct: 178 VLSAEALKPGMLLTGTVSSLEDHGYLVDIGVDGTRAFLP 216 Score = 36.3 bits (80), Expect = 0.10 Identities = 34/123 (27%), Positives = 58/123 (47%), Gaps = 7/123 (5%) Query: 76 LRPGINLLGRVIHVSDVK-IKVSMPCKLLGNVMACHISESYNKL-LEAYVEDKTEKVREL 133 L G +GRV+ V+ + + VS P +G V H+S+SY++ LE +V K + L Sbjct: 1227 LEEGEVAMGRVVKVTPNEGLTVSFPFGKIGTVSIFHMSDSYSETPLEDFVPQKVVRCYIL 1286 Query: 134 SQMFKPGQYIAVSVVELAPGNTMLTTMPQHVNSGKRHTEIKKGAIFQAAVSSVEDHGYVM 193 S +++ P P+ +NS + +IK+G + + V S++ HG Sbjct: 1287 STADNV-LTLSLRSSRTNPETKSKVEDPE-INSIQ---DIKEGQLLRGYVGSIQPHGVFF 1341 Query: 194 DLG 196 LG Sbjct: 1342 RLG 1344 >BC049838-1|AAH49838.1| 1436|Homo sapiens PDCD11 protein protein. Length = 1436 Score = 86.6 bits (205), Expect = 7e-17 Identities = 64/219 (29%), Positives = 103/219 (47%), Gaps = 17/219 (7%) Query: 1 MADAEEYFPRGGK----KPTGAHFKQS---GNFLGVXXXXXXXXXXXXXXSEGDDGYLSD 53 MA+ EE FPRGG KP A F+QS N + L Sbjct: 1 MANLEESFPRGGTRKIHKPEKA-FQQSVEQDNLFDISTEEGSTKRKKSQKGPAKTKKLKI 59 Query: 54 EAQDYLKTHKLNNNLIFLSSKSLRPGINLLGRVIHVSDVKIKVSMPCKLLGNVMACHISE 113 E ++ K+ + LS +SL G+ +LG V V+++++ +S+P L G V I + Sbjct: 60 EKRESSKSAR--EKFEILSVESLCEGMRILGCVKEVNELELVISLPNGLQGFVQVTEICD 117 Query: 114 SYNKLLEAYV--EDKTEKVRELSQMFKPGQYI-----AVSVVELAPGNTMLTTMPQHVNS 166 +Y K L V E + + L ++F PG + ++ + + + L+ P++VN Sbjct: 118 AYTKKLNEQVTQEQPLKDLLHLPELFSPGMLVRCVVSSLGITDRGKKSVKLSLNPKNVNR 177 Query: 167 GKRHTEIKKGAIFQAAVSSVEDHGYVMDLGIPNTTAFLP 205 +K G + VSS+EDHGY++D+G+ T AFLP Sbjct: 178 VLSAEALKPGMLLTGTVSSLEDHGYLVDIGVDGTRAFLP 216 Score = 36.3 bits (80), Expect = 0.10 Identities = 34/123 (27%), Positives = 58/123 (47%), Gaps = 7/123 (5%) Query: 76 LRPGINLLGRVIHVSDVK-IKVSMPCKLLGNVMACHISESYNKL-LEAYVEDKTEKVREL 133 L G +GRV+ V+ + + VS P +G V H+S+SY++ LE +V K + L Sbjct: 1227 LEEGEVAMGRVVKVTPNEGLTVSFPFGKIGTVSIFHMSDSYSETPLEDFVPQKVVRCYIL 1286 Query: 134 SQMFKPGQYIAVSVVELAPGNTMLTTMPQHVNSGKRHTEIKKGAIFQAAVSSVEDHGYVM 193 S +++ P P+ +NS + +IK+G + + V S++ HG Sbjct: 1287 STADNV-LTLSLRSSRTNPETKSKVEDPE-INSIQ---DIKEGQLLRGYVGSIQPHGVFF 1341 Query: 194 DLG 196 LG Sbjct: 1342 RLG 1344 >AL603983-1|CAI15102.1| 1871|Homo sapiens programmed cell death 11 protein. Length = 1871 Score = 86.6 bits (205), Expect = 7e-17 Identities = 64/219 (29%), Positives = 103/219 (47%), Gaps = 17/219 (7%) Query: 1 MADAEEYFPRGGK----KPTGAHFKQS---GNFLGVXXXXXXXXXXXXXXSEGDDGYLSD 53 MA+ EE FPRGG KP A F+QS N + L Sbjct: 1 MANLEESFPRGGTRKIHKPEKA-FQQSVEQDNLFDISTEEGSTKRKKSQKGPAKTKKLKI 59 Query: 54 EAQDYLKTHKLNNNLIFLSSKSLRPGINLLGRVIHVSDVKIKVSMPCKLLGNVMACHISE 113 E ++ K+ + LS +SL G+ +LG V V+++++ +S+P L G V I + Sbjct: 60 EKRESSKSAR--EKFEILSVESLCEGMRILGCVKEVNELELVISLPNGLQGFVQVTEICD 117 Query: 114 SYNKLLEAYV--EDKTEKVRELSQMFKPGQYI-----AVSVVELAPGNTMLTTMPQHVNS 166 +Y K L V E + + L ++F PG + ++ + + + L+ P++VN Sbjct: 118 AYTKKLNEQVTQEQPLKDLLHLPELFSPGMLVRCVVSSLGITDRGKKSVKLSLNPKNVNR 177 Query: 167 GKRHTEIKKGAIFQAAVSSVEDHGYVMDLGIPNTTAFLP 205 +K G + VSS+EDHGY++D+G+ T AFLP Sbjct: 178 VLSAEALKPGMLLTGTVSSLEDHGYLVDIGVDGTRAFLP 216 Score = 36.3 bits (80), Expect = 0.10 Identities = 34/123 (27%), Positives = 58/123 (47%), Gaps = 7/123 (5%) Query: 76 LRPGINLLGRVIHVSDVK-IKVSMPCKLLGNVMACHISESYNKL-LEAYVEDKTEKVREL 133 L G +GRV+ V+ + + VS P +G V H+S+SY++ LE +V K + L Sbjct: 1227 LEEGEVAMGRVVKVTPNEGLTVSFPFGKIGTVSIFHMSDSYSETPLEDFVPQKVVRCYIL 1286 Query: 134 SQMFKPGQYIAVSVVELAPGNTMLTTMPQHVNSGKRHTEIKKGAIFQAAVSSVEDHGYVM 193 S +++ P P+ +NS + +IK+G + + V S++ HG Sbjct: 1287 STADNV-LTLSLRSSRTNPETKSKVEDPE-INSIQ---DIKEGQLLRGYVGSIQPHGVFF 1341 Query: 194 DLG 196 LG Sbjct: 1342 RLG 1344 >AL591408-6|CAI16749.1| 1871|Homo sapiens programmed cell death 11 protein. Length = 1871 Score = 86.6 bits (205), Expect = 7e-17 Identities = 64/219 (29%), Positives = 103/219 (47%), Gaps = 17/219 (7%) Query: 1 MADAEEYFPRGGK----KPTGAHFKQS---GNFLGVXXXXXXXXXXXXXXSEGDDGYLSD 53 MA+ EE FPRGG KP A F+QS N + L Sbjct: 1 MANLEESFPRGGTRKIHKPEKA-FQQSVEQDNLFDISTEEGSTKRKKSQKGPAKTKKLKI 59 Query: 54 EAQDYLKTHKLNNNLIFLSSKSLRPGINLLGRVIHVSDVKIKVSMPCKLLGNVMACHISE 113 E ++ K+ + LS +SL G+ +LG V V+++++ +S+P L G V I + Sbjct: 60 EKRESSKSAR--EKFEILSVESLCEGMRILGCVKEVNELELVISLPNGLQGFVQVTEICD 117 Query: 114 SYNKLLEAYV--EDKTEKVRELSQMFKPGQYI-----AVSVVELAPGNTMLTTMPQHVNS 166 +Y K L V E + + L ++F PG + ++ + + + L+ P++VN Sbjct: 118 AYTKKLNEQVTQEQPLKDLLHLPELFSPGMLVRCVVSSLGITDRGKKSVKLSLNPKNVNR 177 Query: 167 GKRHTEIKKGAIFQAAVSSVEDHGYVMDLGIPNTTAFLP 205 +K G + VSS+EDHGY++D+G+ T AFLP Sbjct: 178 VLSAEALKPGMLLTGTVSSLEDHGYLVDIGVDGTRAFLP 216 Score = 36.3 bits (80), Expect = 0.10 Identities = 34/123 (27%), Positives = 58/123 (47%), Gaps = 7/123 (5%) Query: 76 LRPGINLLGRVIHVSDVK-IKVSMPCKLLGNVMACHISESYNKL-LEAYVEDKTEKVREL 133 L G +GRV+ V+ + + VS P +G V H+S+SY++ LE +V K + L Sbjct: 1227 LEEGEVAMGRVVKVTPNEGLTVSFPFGKIGTVSIFHMSDSYSETPLEDFVPQKVVRCYIL 1286 Query: 134 SQMFKPGQYIAVSVVELAPGNTMLTTMPQHVNSGKRHTEIKKGAIFQAAVSSVEDHGYVM 193 S +++ P P+ +NS + +IK+G + + V S++ HG Sbjct: 1287 STADNV-LTLSLRSSRTNPETKSKVEDPE-INSIQ---DIKEGQLLRGYVGSIQPHGVFF 1341 Query: 194 DLG 196 LG Sbjct: 1342 RLG 1344 >AL139339-5|CAH71487.1| 1871|Homo sapiens programmed cell death 11 protein. Length = 1871 Score = 86.6 bits (205), Expect = 7e-17 Identities = 64/219 (29%), Positives = 103/219 (47%), Gaps = 17/219 (7%) Query: 1 MADAEEYFPRGGK----KPTGAHFKQS---GNFLGVXXXXXXXXXXXXXXSEGDDGYLSD 53 MA+ EE FPRGG KP A F+QS N + L Sbjct: 1 MANLEESFPRGGTRKIHKPEKA-FQQSVEQDNLFDISTEEGSTKRKKSQKGPAKTKKLKI 59 Query: 54 EAQDYLKTHKLNNNLIFLSSKSLRPGINLLGRVIHVSDVKIKVSMPCKLLGNVMACHISE 113 E ++ K+ + LS +SL G+ +LG V V+++++ +S+P L G V I + Sbjct: 60 EKRESSKSAR--EKFEILSVESLCEGMRILGCVKEVNELELVISLPNGLQGFVQVTEICD 117 Query: 114 SYNKLLEAYV--EDKTEKVRELSQMFKPGQYI-----AVSVVELAPGNTMLTTMPQHVNS 166 +Y K L V E + + L ++F PG + ++ + + + L+ P++VN Sbjct: 118 AYTKKLNEQVTQEQPLKDLLHLPELFSPGMLVRCVVSSLGITDRGKKSVKLSLNPKNVNR 177 Query: 167 GKRHTEIKKGAIFQAAVSSVEDHGYVMDLGIPNTTAFLP 205 +K G + VSS+EDHGY++D+G+ T AFLP Sbjct: 178 VLSAEALKPGMLLTGTVSSLEDHGYLVDIGVDGTRAFLP 216 Score = 36.3 bits (80), Expect = 0.10 Identities = 34/123 (27%), Positives = 58/123 (47%), Gaps = 7/123 (5%) Query: 76 LRPGINLLGRVIHVSDVK-IKVSMPCKLLGNVMACHISESYNKL-LEAYVEDKTEKVREL 133 L G +GRV+ V+ + + VS P +G V H+S+SY++ LE +V K + L Sbjct: 1227 LEEGEVAMGRVVKVTPNEGLTVSFPFGKIGTVSIFHMSDSYSETPLEDFVPQKVVRCYIL 1286 Query: 134 SQMFKPGQYIAVSVVELAPGNTMLTTMPQHVNSGKRHTEIKKGAIFQAAVSSVEDHGYVM 193 S +++ P P+ +NS + +IK+G + + V S++ HG Sbjct: 1287 STADNV-LTLSLRSSRTNPETKSKVEDPE-INSIQ---DIKEGQLLRGYVGSIQPHGVFF 1341 Query: 194 DLG 196 LG Sbjct: 1342 RLG 1344 Database: human Posted date: Oct 5, 2007 11:13 AM Number of letters in database: 73,234,838 Number of sequences in database: 224,733 Lambda K H 0.315 0.133 0.382 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 34,981,954 Number of Sequences: 224733 Number of extensions: 1360680 Number of successful extensions: 2123 Number of sequences better than 10.0: 8 Number of HSP's better than 10.0 without gapping: 8 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 2075 Number of HSP's gapped (non-prelim): 24 length of query: 250 length of database: 73,234,838 effective HSP length: 88 effective length of query: 162 effective length of database: 53,458,334 effective search space: 8660250108 effective search space used: 8660250108 T: 11 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 42 (22.0 bits) S2: 64 (29.9 bits)
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