Silkworm BLAST Result against bee

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000756-TA|BGIBMGA000756-PA|IPR003029|RNA binding S1,
IPR008994|Nucleic acid-binding, OB-fold
         (250 letters)

Database: bee 
           429 sequences; 140,377 total letters

Searching.....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB167961-1|BAD51404.1|  554|Apis mellifera E74 protein.                28   0.093
U70841-1|AAC47455.1|  377|Apis mellifera ultraviolet sensitive o...    23   2.0  
AF004168-1|AAC13417.1|  377|Apis mellifera blue-sensitive opsin ...    23   2.0  
AY703752-1|AAU12748.1|  152|Apis mellifera long-wavelength rhodo...    23   3.5  
AB207270-1|BAE72137.1|  429|Apis mellifera broad-complex protein.      21   8.1  
AB193550-1|BAD66824.1|  699|Apis mellifera soluble guanylyl cycl...    21   8.1  

>AB167961-1|BAD51404.1|  554|Apis mellifera E74 protein.
          Length = 554

 Score = 27.9 bits (59), Expect = 0.093
 Identities = 11/22 (50%), Positives = 16/22 (72%)

Query: 177 AIFQAAVSSVEDHGYVMDLGIP 198
           ++ QAA SSV D  Y+++LG P
Sbjct: 408 SVIQAATSSVSDDLYLLELGFP 429


>U70841-1|AAC47455.1|  377|Apis mellifera ultraviolet sensitive
           opsin protein.
          Length = 377

 Score = 23.4 bits (48), Expect = 2.0
 Identities = 12/39 (30%), Positives = 21/39 (53%)

Query: 69  IFLSSKSLRPGINLLGRVIHVSDVKIKVSMPCKLLGNVM 107
           IF +SKSLR   N+    + + D+ +   MP  ++ + M
Sbjct: 81  IFSTSKSLRTPSNMFIVSLAIFDIIMAFEMPMLVISSFM 119


>AF004168-1|AAC13417.1|  377|Apis mellifera blue-sensitive opsin
           protein.
          Length = 377

 Score = 23.4 bits (48), Expect = 2.0
 Identities = 12/39 (30%), Positives = 21/39 (53%)

Query: 69  IFLSSKSLRPGINLLGRVIHVSDVKIKVSMPCKLLGNVM 107
           IF +SKSLR   N+    + + D+ +   MP  ++ + M
Sbjct: 81  IFSTSKSLRTPSNMFIVSLAIFDIIMAFEMPMLVISSFM 119


>AY703752-1|AAU12748.1|  152|Apis mellifera long-wavelength
          rhodopsin protein.
          Length = 152

 Score = 22.6 bits (46), Expect = 3.5
 Identities = 12/23 (52%), Positives = 15/23 (65%)

Query: 69 IFLSSKSLRPGINLLGRVIHVSD 91
          IFLS+KSLR   NL    + +SD
Sbjct: 42 IFLSTKSLRTPSNLFVINLAISD 64


>AB207270-1|BAE72137.1|  429|Apis mellifera broad-complex protein.
          Length = 429

 Score = 21.4 bits (43), Expect = 8.1
 Identities = 8/11 (72%), Positives = 8/11 (72%)

Query: 6   EYFPRGGKKPT 16
           E FPRGG  PT
Sbjct: 148 ESFPRGGSLPT 158


>AB193550-1|BAD66824.1|  699|Apis mellifera soluble guanylyl cyclase
           alpha 1 subunit protein.
          Length = 699

 Score = 21.4 bits (43), Expect = 8.1
 Identities = 9/30 (30%), Positives = 19/30 (63%)

Query: 65  NNNLIFLSSKSLRPGINLLGRVIHVSDVKI 94
           +++++F+SS  L     L GR + +SD+ +
Sbjct: 386 SDSILFVSSPFLNGLEGLTGRGLFISDIPL 415


  Database: bee
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 140,377
  Number of sequences in database:  429
  
Lambda     K      H
   0.315    0.133    0.382 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 67,274
Number of Sequences: 429
Number of extensions: 2524
Number of successful extensions: 8
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 2
Number of HSP's gapped (non-prelim): 6
length of query: 250
length of database: 140,377
effective HSP length: 56
effective length of query: 194
effective length of database: 116,353
effective search space: 22572482
effective search space used: 22572482
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (22.0 bits)
S2: 43 (21.4 bits)