GeneModel BLAST Result against tribolium

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000756-TA|BGIBMGA000756-PA|IPR003029|RNA binding S1,
IPR008994|Nucleic acid-binding, OB-fold
         (250 letters)

Database: tribolium 
           317 sequences; 114,650 total letters

Searching....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AM292366-1|CAL23178.2|  379|Tribolium castaneum gustatory recept...    23   2.2  
AM292362-1|CAL23174.2|  398|Tribolium castaneum gustatory recept...    23   2.2  
AM292329-1|CAL23141.2|  379|Tribolium castaneum gustatory recept...    23   2.2  
AF317551-1|AAG39634.1|  312|Tribolium castaneum distal-less prot...    23   2.2  
AJ005083-1|CAB65469.1|  585|Tribolium castaneum signal receptor ...    22   3.9  
AM292368-1|CAL23180.2|  387|Tribolium castaneum gustatory recept...    22   5.1  
AM292347-1|CAL23159.2|  387|Tribolium castaneum gustatory recept...    22   5.1  
AM292327-1|CAL23139.2|  387|Tribolium castaneum gustatory recept...    22   5.1  

>AM292366-1|CAL23178.2|  379|Tribolium castaneum gustatory receptor
           candidate 45 protein.
          Length = 379

 Score = 23.0 bits (47), Expect = 2.2
 Identities = 12/38 (31%), Positives = 24/38 (63%), Gaps = 4/38 (10%)

Query: 117 KLLEAYVEDKTEKVRELSQMFKPGQYIAVSVVELAPGN 154
           KL E +V +   +VR  +++FK  Q+++ ++V +  GN
Sbjct: 314 KLQEQFVTNS--EVR--TELFKLAQHVSANIVHITAGN 347


>AM292362-1|CAL23174.2|  398|Tribolium castaneum gustatory receptor
           candidate 41 protein.
          Length = 398

 Score = 23.0 bits (47), Expect = 2.2
 Identities = 10/29 (34%), Positives = 17/29 (58%)

Query: 126 KTEKVRELSQMFKPGQYIAVSVVELAPGN 154
           KT   R  +Q+F+ GQ+ A+ V ++   N
Sbjct: 6   KTRVKRASNQLFRFGQFCAICVPKITSTN 34


>AM292329-1|CAL23141.2|  379|Tribolium castaneum gustatory receptor
           candidate 8 protein.
          Length = 379

 Score = 23.0 bits (47), Expect = 2.2
 Identities = 12/38 (31%), Positives = 24/38 (63%), Gaps = 4/38 (10%)

Query: 117 KLLEAYVEDKTEKVRELSQMFKPGQYIAVSVVELAPGN 154
           KL E +V +   +VR  +++FK  Q+++ ++V +  GN
Sbjct: 314 KLQEQFVTNS--EVR--TELFKLAQHVSANIVHITAGN 347


>AF317551-1|AAG39634.1|  312|Tribolium castaneum distal-less
           protein.
          Length = 312

 Score = 23.0 bits (47), Expect = 2.2
 Identities = 10/19 (52%), Positives = 12/19 (63%)

Query: 226 KNAPMRTPKPIYSLLSLKQ 244
           K   MR P+ IYS L L+Q
Sbjct: 117 KGKKMRKPRTIYSSLQLQQ 135


>AJ005083-1|CAB65469.1|  585|Tribolium castaneum signal receptor
           protein protein.
          Length = 585

 Score = 22.2 bits (45), Expect = 3.9
 Identities = 7/17 (41%), Positives = 11/17 (64%)

Query: 100 CKLLGNVMACHISESYN 116
           C+ +GN   CH S+ Y+
Sbjct: 161 CEDIGNSHRCHCSDGYS 177


>AM292368-1|CAL23180.2|  387|Tribolium castaneum gustatory
          receptor candidate 47 protein.
          Length = 387

 Score = 21.8 bits (44), Expect = 5.1
 Identities = 7/20 (35%), Positives = 12/20 (60%)

Query: 45 EGDDGYLSDEAQDYLKTHKL 64
          +  DG++ DE   + + HKL
Sbjct: 39 DSKDGHVIDEHDQFFRDHKL 58


>AM292347-1|CAL23159.2|  387|Tribolium castaneum gustatory
          receptor candidate 26 protein.
          Length = 387

 Score = 21.8 bits (44), Expect = 5.1
 Identities = 7/20 (35%), Positives = 12/20 (60%)

Query: 45 EGDDGYLSDEAQDYLKTHKL 64
          +  DG++ DE   + + HKL
Sbjct: 39 DSKDGHVIDEHDQFFRDHKL 58


>AM292327-1|CAL23139.2|  387|Tribolium castaneum gustatory
          receptor candidate 6 protein.
          Length = 387

 Score = 21.8 bits (44), Expect = 5.1
 Identities = 7/20 (35%), Positives = 12/20 (60%)

Query: 45 EGDDGYLSDEAQDYLKTHKL 64
          +  DG++ DE   + + HKL
Sbjct: 39 DSKDGHVIDEHDQFFRDHKL 58


  Database: tribolium
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 114,650
  Number of sequences in database:  317
  
Lambda     K      H
   0.315    0.133    0.382 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 54,878
Number of Sequences: 317
Number of extensions: 2221
Number of successful extensions: 8
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of query: 250
length of database: 114,650
effective HSP length: 55
effective length of query: 195
effective length of database: 97,215
effective search space: 18956925
effective search space used: 18956925
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (22.0 bits)
S2: 42 (21.0 bits)