GeneModel BLAST Result against rice

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000756-TA|BGIBMGA000756-PA|IPR003029|RNA binding S1,
IPR008994|Nucleic acid-binding, OB-fold
         (250 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

07_01_0733 + 5570084-5570282,5570395-5570600,5572484-5572624,557...    48   1e-05
07_03_0635 + 20151861-20152249,20152589-20152709,20154914-201549...    30   1.5  
08_01_0007 - 57681-57728,58260-58336,58418-58464,58808-58908,590...    29   4.7  
09_02_0496 - 9892242-9892499,9892956-9893045,9893046-9893094,989...    28   6.2  

>07_01_0733 +
           5570084-5570282,5570395-5570600,5572484-5572624,
           5572773-5572949,5573049-5573145,5573575-5573687,
           5573774-5573896,5574004-5574075,5575340-5575432,
           5575564-5575674,5575767-5575889,5576834-5576890,
           5576939-5577022,5577140-5577214,5577418-5577554,
           5577719-5577853,5579029-5579168,5579334-5579399,
           5579732-5579838,5579910-5579990,5580064-5580138,
           5580224-5580325,5581837-5582005,5582090-5582217,
           5582596-5582679,5582779-5582879,5583729-5583882,
           5583964-5584038,5584112-5584262,5584463-5585078,
           5585427-5585487,5585874-5586019,5586104-5586287,
           5586363-5586440,5586603-5586931,5587023-5587199,
           5587571-5587667,5587742-5587897,5587962-5588198,
           5588271-5588354,5588426-5588486,5588762-5588898
          Length = 1912

 Score = 47.6 bits (108), Expect = 1e-05
 Identities = 37/155 (23%), Positives = 70/155 (45%), Gaps = 14/155 (9%)

Query: 74  KSLRPGINLLGRVIHVSDVKIKVSMPCKLLGNVMACHISESYNKLLEAYVEDKTEKVREL 133
           K++ P + L G VI V+   I VS+P  + G V +  + +     + +    K  +    
Sbjct: 135 KNISPNMKLWGVVIEVNQKDIVVSLPGGMRGFVRSEEVHD-----ITSQETRKDSEGSIC 189

Query: 134 SQMFKPGQYIAVSVVELAPGN--------TMLTTMPQHVNSGKRHTEIKKGAIFQAAVSS 185
           + +   GQ +   V+ +   N          L+     +  G     I+ G +  A V S
Sbjct: 190 ADVVHVGQLVPCIVLRVDDDNKEGKVNKRVWLSLRLSRIYKGLSLDAIQDGMVLTAQVKS 249

Query: 186 VEDHGYVMDLGIPNTTAFLPKKD-ANPEIDLGKSV 219
           +EDHGY++  G+ + + F+PK D  + +I+ G+ +
Sbjct: 250 IEDHGYILHFGVSSFSGFMPKADRESAKIESGQLI 284


>07_03_0635 +
           20151861-20152249,20152589-20152709,20154914-20154996,
           20155819-20155903,20155987-20156277,20156555-20156645,
           20157380-20158280,20158401-20158561,20158759-20158862,
           20159040-20159205,20159283-20159378,20159694-20159800,
           20160443-20160775,20161393-20161599,20161774-20161857,
           20162887-20163020,20163166-20163393,20163541-20163712,
           20164301-20164555,20164647-20164919
          Length = 1426

 Score = 30.3 bits (65), Expect = 1.5
 Identities = 23/107 (21%), Positives = 42/107 (39%), Gaps = 2/107 (1%)

Query: 99  PCKLLGNVMACHISESYNKLLEAYVEDKTEKVRELSQMFKPGQYIAVSVVELAPGNTMLT 158
           P  L  N M  ++        + + E + + + ++S  F+PG   A+  V  A   T++ 
Sbjct: 849 PLSLSFNHMNYYVDMPAEMKAQGFTESRLQLLSDISGAFRPGVLTALVGVSGAGKTTLMD 908

Query: 159 TMPQHVNSGKRHTEIKKGAIFQAAVSSVEDHGYV--MDLGIPNTTAF 203
            +     SG    +IK     +   +     GY    D+  PN T +
Sbjct: 909 VLAGRKTSGTIEGDIKLSGYPKKQETFARISGYCEQTDIHSPNLTVY 955


>08_01_0007 -
           57681-57728,58260-58336,58418-58464,58808-58908,
           59016-59108,59418-59540,59637-59755,60154-60510,
           60888-61011
          Length = 362

 Score = 28.7 bits (61), Expect = 4.7
 Identities = 12/30 (40%), Positives = 18/30 (60%)

Query: 50  YLSDEAQDYLKTHKLNNNLIFLSSKSLRPG 79
           Y+ D A ++LKTH L    + +  K+L PG
Sbjct: 316 YILDSAGEFLKTHGLQAGDVIIIYKNLAPG 345


>09_02_0496 -
           9892242-9892499,9892956-9893045,9893046-9893094,
           9893330-9893557,9894095-9894261,9894312-9894395,
           9894614-9894820,9894919-9895251,9895371-9895513,
           9895607-9895723,9895824-9895980,9896054-9896157,
           9896272-9896432,9896518-9896707,9896732-9896834,
           9896950-9897231,9897327-9897649,9897750-9897786,
           9898109-9898162,9898292-9898368,9898449-9898502,
           9898738-9898822,9900289-9900426,9900592-9900603
          Length = 1150

 Score = 28.3 bits (60), Expect = 6.2
 Identities = 21/80 (26%), Positives = 33/80 (41%), Gaps = 2/80 (2%)

Query: 126 KTEKVRELSQMFKPGQYIAVSVVELAPGNTMLTTMPQHVNSGKRHTEIKKGAI--FQAAV 183
           + E +++LS  F+PG   A+  +  A   T+L  +     SG  H  I        Q   
Sbjct: 690 RLELLKDLSGSFRPGVLTALMGISGAGKTTLLDVLAGRKTSGHIHGNITVSGYPKKQETF 749

Query: 184 SSVEDHGYVMDLGIPNTTAF 203
           S V  +    D+  PN T +
Sbjct: 750 SRVSGYCEQNDIHSPNLTVY 769


  Database: rice
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.315    0.133    0.382 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,910,003
Number of Sequences: 37544
Number of extensions: 266330
Number of successful extensions: 392
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 389
Number of HSP's gapped (non-prelim): 5
length of query: 250
length of database: 14,793,348
effective HSP length: 80
effective length of query: 170
effective length of database: 11,789,828
effective search space: 2004270760
effective search space used: 2004270760
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (22.0 bits)
S2: 59 (27.9 bits)