GeneModel BLAST Result against nematostella

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000756-TA|BGIBMGA000756-PA|IPR003029|RNA binding S1,
IPR008994|Nucleic acid-binding, OB-fold
         (250 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_22707| Best HMM Match : No HMM Matches (HMM E-Value=.)              68   9e-12
SB_43598| Best HMM Match : cNMP_binding (HMM E-Value=4.3e-22)          29   4.8  
SB_41020| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   8.4  

>SB_22707| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1499

 Score = 67.7 bits (158), Expect = 9e-12
 Identities = 50/151 (33%), Positives = 71/151 (47%), Gaps = 15/151 (9%)

Query: 80  INLLGRVIHVSDVKIKVSMPCKLLGNVMACHISESYNKLLEAYVEDKTEK-----VRELS 134
           + LLG V  V + ++ +S+P  L G V   HI +   KL+ A  +  TE+     +  L 
Sbjct: 1   MKLLGAVKEVGEFELIISLPNGLSGFV---HILDINEKLMSALAKSSTEERIEDSIPSLG 57

Query: 135 QMFKPGQYIAVSVVELAPGN-----TMLTTMPQHVNSGKRHTEIKKGAIFQAAVSSVEDH 189
            +F     +   V EL           L+  P+ VN+G   T I  G +    VSSVEDH
Sbjct: 58  DLFTVNSLVVCVVKELLGSKHGHRKVKLSLRPEDVNAGV--TTIVPGFVLPGCVSSVEDH 115

Query: 190 GYVMDLGIPNTTAFLPKKDANPEIDLGKSVN 220
           GYV+  GIP  T FL KK     +  G+ +N
Sbjct: 116 GYVLSFGIPGKTGFLSKKKTGRVLVEGQYLN 146



 Score = 31.5 bits (68), Expect = 0.68
 Identities = 36/149 (24%), Positives = 66/149 (44%), Gaps = 11/149 (7%)

Query: 59  LKTHKLNNNLIFLSSKSLRPGINLLGRVIHVSDVKIKVSMPCKLLGNVMACHISESYNKL 118
           L T K   N  F+  + ++PG  + G +I +    + VS+   + G V   H+++   K 
Sbjct: 318 LTTKKSIINKPFMRYEDIKPGSIVEGTIITLEKFGMLVSVSDHIKGLVTNMHLADIILKH 377

Query: 119 LE-AYVEDKTEKVRELSQMFKPGQYIAVSVVELAPGNTMLTTMPQHVNSGKRHTEIKKGA 177
            E    E K  K R L+    PGQ      + L    TM+++  Q +    ++++ K G 
Sbjct: 378 PEKKLTEGKVVKCRVLT--VDPGQ----RRLHLTHKKTMVSSTLQVIT---QYSDAKPGT 428

Query: 178 IFQAAVSSVEDHGYVMDLGIPNTTAFLPK 206
                ++SV ++G ++     N    +PK
Sbjct: 429 TSHGFITSVREYGCLVTF-YNNVKGLVPK 456


>SB_43598| Best HMM Match : cNMP_binding (HMM E-Value=4.3e-22)
          Length = 581

 Score = 28.7 bits (61), Expect = 4.8
 Identities = 25/98 (25%), Positives = 47/98 (47%), Gaps = 11/98 (11%)

Query: 52  SDEAQDYLKTHKLNNNLIFLSSKSLRPGINLLGRVIHVSD-VKIKVSMPCKLLGNVMACH 110
           S+  + Y+  HK+NN+L     + +   I+ +       D  +I   +P KL G + A H
Sbjct: 389 SNSIKQYMNNHKVNNDL----QERVISWIDYMWHKKRSLDHERILEKLPEKLRGQI-AVH 443

Query: 111 ISESYNKLLEAYVEDKTEKVREL-----SQMFKPGQYI 143
           +  +  + +  + + +   +RE+     SQ+F PG YI
Sbjct: 444 VYLAVLRQVPVFADCEPGLLREIVVKLRSQVFSPGDYI 481


>SB_41020| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1229

 Score = 27.9 bits (59), Expect = 8.4
 Identities = 30/111 (27%), Positives = 49/111 (44%), Gaps = 13/111 (11%)

Query: 143 IAVSVVELAPGNTMLTTMPQHV--NSGKRHTEIKKG----AIFQAAVSSVEDHGYVMDLG 196
           IA SV+ L+  N  + T    V   +  + T+I  G        A  SS+     V+D  
Sbjct: 779 IATSVILLSSLNDTIRTRSTSVVFETTMKRTQITTGYPPLMTSSAVASSISATSVVVDST 838

Query: 197 IPNTTAFLPKKDANPEIDLGKSVNLNHPLKNAPMRTPKPIYSLLSLKQNPL 247
            PNTT  +P   A+    +  S+ +N  ++ + + T KP  S ++    PL
Sbjct: 839 TPNTTTLVPSISAS----IPSSITMNSSIEQS-IDTLKP--SSIAFATTPL 882


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.315    0.133    0.382 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,033,008
Number of Sequences: 59808
Number of extensions: 304345
Number of successful extensions: 552
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 547
Number of HSP's gapped (non-prelim): 5
length of query: 250
length of database: 16,821,457
effective HSP length: 80
effective length of query: 170
effective length of database: 12,036,817
effective search space: 2046258890
effective search space used: 2046258890
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (22.0 bits)
S2: 59 (27.9 bits)