SilkBase IMG001 IMG002 IMG003 IMG005 IMG006 IMG007 IMG008 IMG009 kuwako IMG010 IMG011 IMG012

Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000756-TA|BGIBMGA000756-PA|IPR003029|RNA binding S1,
IPR008994|Nucleic acid-binding, OB-fold
         (250 letters)

Database: human 
           224,733 sequences; 73,234,838 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

D80007-1|BAA11502.1| 1884|Homo sapiens KIAA0185 protein.               87   7e-17
BC111040-1|AAI11041.1| 1444|Homo sapiens PDCD11 protein protein.       87   7e-17
BC080560-1|AAH80560.1| 1434|Homo sapiens PDCD11 protein protein.       87   7e-17
BC064486-1|AAH64486.1| 1434|Homo sapiens Unknown (protein for IM...    87   7e-17
BC049838-1|AAH49838.1| 1436|Homo sapiens PDCD11 protein protein.       87   7e-17
AL603983-1|CAI15102.1| 1871|Homo sapiens programmed cell death 1...    87   7e-17
AL591408-6|CAI16749.1| 1871|Homo sapiens programmed cell death 1...    87   7e-17
AL139339-5|CAH71487.1| 1871|Homo sapiens programmed cell death 1...    87   7e-17

>D80007-1|BAA11502.1| 1884|Homo sapiens KIAA0185 protein.
          Length = 1884

 Score = 86.6 bits (205), Expect = 7e-17
 Identities = 64/219 (29%), Positives = 103/219 (47%), Gaps = 17/219 (7%)

Query: 1   MADAEEYFPRGGK----KPTGAHFKQS---GNFLGVXXXXXXXXXXXXXXSEGDDGYLSD 53
           MA+ EE FPRGG     KP  A F+QS    N   +                     L  
Sbjct: 14  MANLEESFPRGGTRKIHKPEKA-FQQSVEQDNLFDISTEEGSTKRKKSQKGPAKTKKLKI 72

Query: 54  EAQDYLKTHKLNNNLIFLSSKSLRPGINLLGRVIHVSDVKIKVSMPCKLLGNVMACHISE 113
           E ++  K+ +       LS +SL  G+ +LG V  V+++++ +S+P  L G V    I +
Sbjct: 73  EKRESSKSAR--EKFEILSVESLCEGMRILGCVKEVNELELVISLPNGLQGFVQVTEICD 130

Query: 114 SYNKLLEAYV--EDKTEKVRELSQMFKPGQYI-----AVSVVELAPGNTMLTTMPQHVNS 166
           +Y K L   V  E   + +  L ++F PG  +     ++ + +    +  L+  P++VN 
Sbjct: 131 AYTKKLNEQVTQEQPLKDLLHLPELFSPGMLVRCVVSSLGITDRGKKSVKLSLNPKNVNR 190

Query: 167 GKRHTEIKKGAIFQAAVSSVEDHGYVMDLGIPNTTAFLP 205
                 +K G +    VSS+EDHGY++D+G+  T AFLP
Sbjct: 191 VLSAEALKPGMLLTGTVSSLEDHGYLVDIGVDGTRAFLP 229



 Score = 36.3 bits (80), Expect = 0.10
 Identities = 34/123 (27%), Positives = 58/123 (47%), Gaps = 7/123 (5%)

Query: 76   LRPGINLLGRVIHVSDVK-IKVSMPCKLLGNVMACHISESYNKL-LEAYVEDKTEKVREL 133
            L  G   +GRV+ V+  + + VS P   +G V   H+S+SY++  LE +V  K  +   L
Sbjct: 1240 LEEGEVAMGRVVKVTPNEGLTVSFPFGKIGTVSIFHMSDSYSETPLEDFVPQKVVRCYIL 1299

Query: 134  SQMFKPGQYIAVSVVELAPGNTMLTTMPQHVNSGKRHTEIKKGAIFQAAVSSVEDHGYVM 193
            S        +++      P        P+ +NS +   +IK+G + +  V S++ HG   
Sbjct: 1300 STADNV-LTLSLRSSRTNPETKSKVEDPE-INSIQ---DIKEGQLLRGYVGSIQPHGVFF 1354

Query: 194  DLG 196
             LG
Sbjct: 1355 RLG 1357


>BC111040-1|AAI11041.1| 1444|Homo sapiens PDCD11 protein protein.
          Length = 1444

 Score = 86.6 bits (205), Expect = 7e-17
 Identities = 64/219 (29%), Positives = 103/219 (47%), Gaps = 17/219 (7%)

Query: 1   MADAEEYFPRGGK----KPTGAHFKQS---GNFLGVXXXXXXXXXXXXXXSEGDDGYLSD 53
           MA+ EE FPRGG     KP  A F+QS    N   +                     L  
Sbjct: 1   MANLEESFPRGGTRKIHKPEKA-FQQSVEQDNLFDISTEEGSTKRKKSQKGPAKTKKLKI 59

Query: 54  EAQDYLKTHKLNNNLIFLSSKSLRPGINLLGRVIHVSDVKIKVSMPCKLLGNVMACHISE 113
           E ++  K+ +       LS +SL  G+ +LG V  V+++++ +S+P  L G V    I +
Sbjct: 60  EKRESSKSAR--EKFEILSVESLCEGMRILGCVKEVNELELVISLPNGLQGFVQVTEICD 117

Query: 114 SYNKLLEAYV--EDKTEKVRELSQMFKPGQYI-----AVSVVELAPGNTMLTTMPQHVNS 166
           +Y K L   V  E   + +  L ++F PG  +     ++ + +    +  L+  P++VN 
Sbjct: 118 AYTKKLNEQVTQEQPLKDLLHLPELFSPGMLVRCVVSSLGITDRGKKSVKLSLNPKNVNR 177

Query: 167 GKRHTEIKKGAIFQAAVSSVEDHGYVMDLGIPNTTAFLP 205
                 +K G +    VSS+EDHGY++D+G+  T AFLP
Sbjct: 178 VLSAEALKPGMLLTGTVSSLEDHGYLVDIGVDGTRAFLP 216



 Score = 36.3 bits (80), Expect = 0.10
 Identities = 34/123 (27%), Positives = 58/123 (47%), Gaps = 7/123 (5%)

Query: 76   LRPGINLLGRVIHVSDVK-IKVSMPCKLLGNVMACHISESYNKL-LEAYVEDKTEKVREL 133
            L  G   +GRV+ V+  + + VS P   +G V   H+S+SY++  LE +V  K  +   L
Sbjct: 1227 LEEGEVAMGRVVKVTPNEGLTVSFPFGKIGTVSIFHMSDSYSETPLEDFVPQKVVRCYIL 1286

Query: 134  SQMFKPGQYIAVSVVELAPGNTMLTTMPQHVNSGKRHTEIKKGAIFQAAVSSVEDHGYVM 193
            S        +++      P        P+ +NS +   +IK+G + +  V S++ HG   
Sbjct: 1287 STADNV-LTLSLRSSRTNPETKSKVEDPE-INSIQ---DIKEGQLLRGYVGSIQPHGVFF 1341

Query: 194  DLG 196
             LG
Sbjct: 1342 RLG 1344


>BC080560-1|AAH80560.1| 1434|Homo sapiens PDCD11 protein protein.
          Length = 1434

 Score = 86.6 bits (205), Expect = 7e-17
 Identities = 64/219 (29%), Positives = 103/219 (47%), Gaps = 17/219 (7%)

Query: 1   MADAEEYFPRGGK----KPTGAHFKQS---GNFLGVXXXXXXXXXXXXXXSEGDDGYLSD 53
           MA+ EE FPRGG     KP  A F+QS    N   +                     L  
Sbjct: 1   MANLEESFPRGGTRKIHKPEKA-FQQSVEQDNLFDISTEEGSTKRKKSQKGPAKTKKLKI 59

Query: 54  EAQDYLKTHKLNNNLIFLSSKSLRPGINLLGRVIHVSDVKIKVSMPCKLLGNVMACHISE 113
           E ++  K+ +       LS +SL  G+ +LG V  V+++++ +S+P  L G V    I +
Sbjct: 60  EKRESSKSAR--EKFEILSVESLCEGMRILGCVKEVNELELVISLPNGLQGFVQVTEICD 117

Query: 114 SYNKLLEAYV--EDKTEKVRELSQMFKPGQYI-----AVSVVELAPGNTMLTTMPQHVNS 166
           +Y K L   V  E   + +  L ++F PG  +     ++ + +    +  L+  P++VN 
Sbjct: 118 AYTKKLNEQVTQEQPLKDLLHLPELFSPGMLVRCVVSSLGITDRGKKSVKLSLNPKNVNR 177

Query: 167 GKRHTEIKKGAIFQAAVSSVEDHGYVMDLGIPNTTAFLP 205
                 +K G +    VSS+EDHGY++D+G+  T AFLP
Sbjct: 178 VLSAEALKPGMLLTGTVSSLEDHGYLVDIGVDGTRAFLP 216



 Score = 36.3 bits (80), Expect = 0.10
 Identities = 34/123 (27%), Positives = 58/123 (47%), Gaps = 7/123 (5%)

Query: 76   LRPGINLLGRVIHVSDVK-IKVSMPCKLLGNVMACHISESYNKL-LEAYVEDKTEKVREL 133
            L  G   +GRV+ V+  + + VS P   +G V   H+S+SY++  LE +V  K  +   L
Sbjct: 1227 LEEGEVAMGRVVKVTPNEGLTVSFPFGKIGTVSIFHMSDSYSETPLEDFVPQKVVRCYIL 1286

Query: 134  SQMFKPGQYIAVSVVELAPGNTMLTTMPQHVNSGKRHTEIKKGAIFQAAVSSVEDHGYVM 193
            S        +++      P        P+ +NS +   +IK+G + +  V S++ HG   
Sbjct: 1287 STADNV-LTLSLRSSRTNPETKSKVEDPE-INSIQ---DIKEGQLLRGYVGSIQPHGVFF 1341

Query: 194  DLG 196
             LG
Sbjct: 1342 RLG 1344


>BC064486-1|AAH64486.1| 1434|Homo sapiens Unknown (protein for
           IMAGE:5930738) protein.
          Length = 1434

 Score = 86.6 bits (205), Expect = 7e-17
 Identities = 64/219 (29%), Positives = 103/219 (47%), Gaps = 17/219 (7%)

Query: 1   MADAEEYFPRGGK----KPTGAHFKQS---GNFLGVXXXXXXXXXXXXXXSEGDDGYLSD 53
           MA+ EE FPRGG     KP  A F+QS    N   +                     L  
Sbjct: 1   MANLEESFPRGGTRKIHKPEKA-FQQSVEQDNLFDISTEEGSTKRKKSQKGPAKTKKLKI 59

Query: 54  EAQDYLKTHKLNNNLIFLSSKSLRPGINLLGRVIHVSDVKIKVSMPCKLLGNVMACHISE 113
           E ++  K+ +       LS +SL  G+ +LG V  V+++++ +S+P  L G V    I +
Sbjct: 60  EKRESSKSAR--EKFEILSVESLCEGMRILGCVKEVNELELVISLPNGLQGFVQVTEICD 117

Query: 114 SYNKLLEAYV--EDKTEKVRELSQMFKPGQYI-----AVSVVELAPGNTMLTTMPQHVNS 166
           +Y K L   V  E   + +  L ++F PG  +     ++ + +    +  L+  P++VN 
Sbjct: 118 AYTKKLNEQVTQEQPLKDLLHLPELFSPGMLVRCVVSSLGITDRGKKSVKLSLNPKNVNR 177

Query: 167 GKRHTEIKKGAIFQAAVSSVEDHGYVMDLGIPNTTAFLP 205
                 +K G +    VSS+EDHGY++D+G+  T AFLP
Sbjct: 178 VLSAEALKPGMLLTGTVSSLEDHGYLVDIGVDGTRAFLP 216



 Score = 36.3 bits (80), Expect = 0.10
 Identities = 34/123 (27%), Positives = 58/123 (47%), Gaps = 7/123 (5%)

Query: 76   LRPGINLLGRVIHVSDVK-IKVSMPCKLLGNVMACHISESYNKL-LEAYVEDKTEKVREL 133
            L  G   +GRV+ V+  + + VS P   +G V   H+S+SY++  LE +V  K  +   L
Sbjct: 1227 LEEGEVAMGRVVKVTPNEGLTVSFPFGKIGTVSIFHMSDSYSETPLEDFVPQKVVRCYIL 1286

Query: 134  SQMFKPGQYIAVSVVELAPGNTMLTTMPQHVNSGKRHTEIKKGAIFQAAVSSVEDHGYVM 193
            S        +++      P        P+ +NS +   +IK+G + +  V S++ HG   
Sbjct: 1287 STADNV-LTLSLRSSRTNPETKSKVEDPE-INSIQ---DIKEGQLLRGYVGSIQPHGVFF 1341

Query: 194  DLG 196
             LG
Sbjct: 1342 RLG 1344


>BC049838-1|AAH49838.1| 1436|Homo sapiens PDCD11 protein protein.
          Length = 1436

 Score = 86.6 bits (205), Expect = 7e-17
 Identities = 64/219 (29%), Positives = 103/219 (47%), Gaps = 17/219 (7%)

Query: 1   MADAEEYFPRGGK----KPTGAHFKQS---GNFLGVXXXXXXXXXXXXXXSEGDDGYLSD 53
           MA+ EE FPRGG     KP  A F+QS    N   +                     L  
Sbjct: 1   MANLEESFPRGGTRKIHKPEKA-FQQSVEQDNLFDISTEEGSTKRKKSQKGPAKTKKLKI 59

Query: 54  EAQDYLKTHKLNNNLIFLSSKSLRPGINLLGRVIHVSDVKIKVSMPCKLLGNVMACHISE 113
           E ++  K+ +       LS +SL  G+ +LG V  V+++++ +S+P  L G V    I +
Sbjct: 60  EKRESSKSAR--EKFEILSVESLCEGMRILGCVKEVNELELVISLPNGLQGFVQVTEICD 117

Query: 114 SYNKLLEAYV--EDKTEKVRELSQMFKPGQYI-----AVSVVELAPGNTMLTTMPQHVNS 166
           +Y K L   V  E   + +  L ++F PG  +     ++ + +    +  L+  P++VN 
Sbjct: 118 AYTKKLNEQVTQEQPLKDLLHLPELFSPGMLVRCVVSSLGITDRGKKSVKLSLNPKNVNR 177

Query: 167 GKRHTEIKKGAIFQAAVSSVEDHGYVMDLGIPNTTAFLP 205
                 +K G +    VSS+EDHGY++D+G+  T AFLP
Sbjct: 178 VLSAEALKPGMLLTGTVSSLEDHGYLVDIGVDGTRAFLP 216



 Score = 36.3 bits (80), Expect = 0.10
 Identities = 34/123 (27%), Positives = 58/123 (47%), Gaps = 7/123 (5%)

Query: 76   LRPGINLLGRVIHVSDVK-IKVSMPCKLLGNVMACHISESYNKL-LEAYVEDKTEKVREL 133
            L  G   +GRV+ V+  + + VS P   +G V   H+S+SY++  LE +V  K  +   L
Sbjct: 1227 LEEGEVAMGRVVKVTPNEGLTVSFPFGKIGTVSIFHMSDSYSETPLEDFVPQKVVRCYIL 1286

Query: 134  SQMFKPGQYIAVSVVELAPGNTMLTTMPQHVNSGKRHTEIKKGAIFQAAVSSVEDHGYVM 193
            S        +++      P        P+ +NS +   +IK+G + +  V S++ HG   
Sbjct: 1287 STADNV-LTLSLRSSRTNPETKSKVEDPE-INSIQ---DIKEGQLLRGYVGSIQPHGVFF 1341

Query: 194  DLG 196
             LG
Sbjct: 1342 RLG 1344


>AL603983-1|CAI15102.1| 1871|Homo sapiens programmed cell death 11
           protein.
          Length = 1871

 Score = 86.6 bits (205), Expect = 7e-17
 Identities = 64/219 (29%), Positives = 103/219 (47%), Gaps = 17/219 (7%)

Query: 1   MADAEEYFPRGGK----KPTGAHFKQS---GNFLGVXXXXXXXXXXXXXXSEGDDGYLSD 53
           MA+ EE FPRGG     KP  A F+QS    N   +                     L  
Sbjct: 1   MANLEESFPRGGTRKIHKPEKA-FQQSVEQDNLFDISTEEGSTKRKKSQKGPAKTKKLKI 59

Query: 54  EAQDYLKTHKLNNNLIFLSSKSLRPGINLLGRVIHVSDVKIKVSMPCKLLGNVMACHISE 113
           E ++  K+ +       LS +SL  G+ +LG V  V+++++ +S+P  L G V    I +
Sbjct: 60  EKRESSKSAR--EKFEILSVESLCEGMRILGCVKEVNELELVISLPNGLQGFVQVTEICD 117

Query: 114 SYNKLLEAYV--EDKTEKVRELSQMFKPGQYI-----AVSVVELAPGNTMLTTMPQHVNS 166
           +Y K L   V  E   + +  L ++F PG  +     ++ + +    +  L+  P++VN 
Sbjct: 118 AYTKKLNEQVTQEQPLKDLLHLPELFSPGMLVRCVVSSLGITDRGKKSVKLSLNPKNVNR 177

Query: 167 GKRHTEIKKGAIFQAAVSSVEDHGYVMDLGIPNTTAFLP 205
                 +K G +    VSS+EDHGY++D+G+  T AFLP
Sbjct: 178 VLSAEALKPGMLLTGTVSSLEDHGYLVDIGVDGTRAFLP 216



 Score = 36.3 bits (80), Expect = 0.10
 Identities = 34/123 (27%), Positives = 58/123 (47%), Gaps = 7/123 (5%)

Query: 76   LRPGINLLGRVIHVSDVK-IKVSMPCKLLGNVMACHISESYNKL-LEAYVEDKTEKVREL 133
            L  G   +GRV+ V+  + + VS P   +G V   H+S+SY++  LE +V  K  +   L
Sbjct: 1227 LEEGEVAMGRVVKVTPNEGLTVSFPFGKIGTVSIFHMSDSYSETPLEDFVPQKVVRCYIL 1286

Query: 134  SQMFKPGQYIAVSVVELAPGNTMLTTMPQHVNSGKRHTEIKKGAIFQAAVSSVEDHGYVM 193
            S        +++      P        P+ +NS +   +IK+G + +  V S++ HG   
Sbjct: 1287 STADNV-LTLSLRSSRTNPETKSKVEDPE-INSIQ---DIKEGQLLRGYVGSIQPHGVFF 1341

Query: 194  DLG 196
             LG
Sbjct: 1342 RLG 1344


>AL591408-6|CAI16749.1| 1871|Homo sapiens programmed cell death 11
           protein.
          Length = 1871

 Score = 86.6 bits (205), Expect = 7e-17
 Identities = 64/219 (29%), Positives = 103/219 (47%), Gaps = 17/219 (7%)

Query: 1   MADAEEYFPRGGK----KPTGAHFKQS---GNFLGVXXXXXXXXXXXXXXSEGDDGYLSD 53
           MA+ EE FPRGG     KP  A F+QS    N   +                     L  
Sbjct: 1   MANLEESFPRGGTRKIHKPEKA-FQQSVEQDNLFDISTEEGSTKRKKSQKGPAKTKKLKI 59

Query: 54  EAQDYLKTHKLNNNLIFLSSKSLRPGINLLGRVIHVSDVKIKVSMPCKLLGNVMACHISE 113
           E ++  K+ +       LS +SL  G+ +LG V  V+++++ +S+P  L G V    I +
Sbjct: 60  EKRESSKSAR--EKFEILSVESLCEGMRILGCVKEVNELELVISLPNGLQGFVQVTEICD 117

Query: 114 SYNKLLEAYV--EDKTEKVRELSQMFKPGQYI-----AVSVVELAPGNTMLTTMPQHVNS 166
           +Y K L   V  E   + +  L ++F PG  +     ++ + +    +  L+  P++VN 
Sbjct: 118 AYTKKLNEQVTQEQPLKDLLHLPELFSPGMLVRCVVSSLGITDRGKKSVKLSLNPKNVNR 177

Query: 167 GKRHTEIKKGAIFQAAVSSVEDHGYVMDLGIPNTTAFLP 205
                 +K G +    VSS+EDHGY++D+G+  T AFLP
Sbjct: 178 VLSAEALKPGMLLTGTVSSLEDHGYLVDIGVDGTRAFLP 216



 Score = 36.3 bits (80), Expect = 0.10
 Identities = 34/123 (27%), Positives = 58/123 (47%), Gaps = 7/123 (5%)

Query: 76   LRPGINLLGRVIHVSDVK-IKVSMPCKLLGNVMACHISESYNKL-LEAYVEDKTEKVREL 133
            L  G   +GRV+ V+  + + VS P   +G V   H+S+SY++  LE +V  K  +   L
Sbjct: 1227 LEEGEVAMGRVVKVTPNEGLTVSFPFGKIGTVSIFHMSDSYSETPLEDFVPQKVVRCYIL 1286

Query: 134  SQMFKPGQYIAVSVVELAPGNTMLTTMPQHVNSGKRHTEIKKGAIFQAAVSSVEDHGYVM 193
            S        +++      P        P+ +NS +   +IK+G + +  V S++ HG   
Sbjct: 1287 STADNV-LTLSLRSSRTNPETKSKVEDPE-INSIQ---DIKEGQLLRGYVGSIQPHGVFF 1341

Query: 194  DLG 196
             LG
Sbjct: 1342 RLG 1344


>AL139339-5|CAH71487.1| 1871|Homo sapiens programmed cell death 11
           protein.
          Length = 1871

 Score = 86.6 bits (205), Expect = 7e-17
 Identities = 64/219 (29%), Positives = 103/219 (47%), Gaps = 17/219 (7%)

Query: 1   MADAEEYFPRGGK----KPTGAHFKQS---GNFLGVXXXXXXXXXXXXXXSEGDDGYLSD 53
           MA+ EE FPRGG     KP  A F+QS    N   +                     L  
Sbjct: 1   MANLEESFPRGGTRKIHKPEKA-FQQSVEQDNLFDISTEEGSTKRKKSQKGPAKTKKLKI 59

Query: 54  EAQDYLKTHKLNNNLIFLSSKSLRPGINLLGRVIHVSDVKIKVSMPCKLLGNVMACHISE 113
           E ++  K+ +       LS +SL  G+ +LG V  V+++++ +S+P  L G V    I +
Sbjct: 60  EKRESSKSAR--EKFEILSVESLCEGMRILGCVKEVNELELVISLPNGLQGFVQVTEICD 117

Query: 114 SYNKLLEAYV--EDKTEKVRELSQMFKPGQYI-----AVSVVELAPGNTMLTTMPQHVNS 166
           +Y K L   V  E   + +  L ++F PG  +     ++ + +    +  L+  P++VN 
Sbjct: 118 AYTKKLNEQVTQEQPLKDLLHLPELFSPGMLVRCVVSSLGITDRGKKSVKLSLNPKNVNR 177

Query: 167 GKRHTEIKKGAIFQAAVSSVEDHGYVMDLGIPNTTAFLP 205
                 +K G +    VSS+EDHGY++D+G+  T AFLP
Sbjct: 178 VLSAEALKPGMLLTGTVSSLEDHGYLVDIGVDGTRAFLP 216



 Score = 36.3 bits (80), Expect = 0.10
 Identities = 34/123 (27%), Positives = 58/123 (47%), Gaps = 7/123 (5%)

Query: 76   LRPGINLLGRVIHVSDVK-IKVSMPCKLLGNVMACHISESYNKL-LEAYVEDKTEKVREL 133
            L  G   +GRV+ V+  + + VS P   +G V   H+S+SY++  LE +V  K  +   L
Sbjct: 1227 LEEGEVAMGRVVKVTPNEGLTVSFPFGKIGTVSIFHMSDSYSETPLEDFVPQKVVRCYIL 1286

Query: 134  SQMFKPGQYIAVSVVELAPGNTMLTTMPQHVNSGKRHTEIKKGAIFQAAVSSVEDHGYVM 193
            S        +++      P        P+ +NS +   +IK+G + +  V S++ HG   
Sbjct: 1287 STADNV-LTLSLRSSRTNPETKSKVEDPE-INSIQ---DIKEGQLLRGYVGSIQPHGVFF 1341

Query: 194  DLG 196
             LG
Sbjct: 1342 RLG 1344


  Database: human
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 73,234,838
  Number of sequences in database:  224,733
  
Lambda     K      H
   0.315    0.133    0.382 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 34,981,954
Number of Sequences: 224733
Number of extensions: 1360680
Number of successful extensions: 2123
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 2075
Number of HSP's gapped (non-prelim): 24
length of query: 250
length of database: 73,234,838
effective HSP length: 88
effective length of query: 162
effective length of database: 53,458,334
effective search space: 8660250108
effective search space used: 8660250108
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (22.0 bits)
S2: 64 (29.9 bits)

- SilkBase 1999-2023 -