GeneModel BLAST Result against fruitfly

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000756-TA|BGIBMGA000756-PA|IPR003029|RNA binding S1,
IPR008994|Nucleic acid-binding, OB-fold
         (250 letters)

Database: fruitfly 
           52,641 sequences; 24,830,863 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY061461-1|AAL29009.1| 1430|Drosophila melanogaster LD41803p pro...    74   2e-13
AE014297-3525|AAF56280.2| 1430|Drosophila melanogaster CG5728-PA...    74   2e-13

>AY061461-1|AAL29009.1| 1430|Drosophila melanogaster LD41803p
           protein.
          Length = 1430

 Score = 74.1 bits (174), Expect = 2e-13
 Identities = 37/152 (24%), Positives = 83/152 (54%), Gaps = 5/152 (3%)

Query: 71  LSSKSLRPGINLLGRVIHVSDVKIKVSMPCKLLGNVMACHISESYNKLLEAYVEDKTEKV 130
           L+  +L+  + ++G V  ++   +++++P ++    +   IS++Y ++ +A +   T + 
Sbjct: 66  LNMDTLQEDMLVMGVVKELTATALQIALPGRMFARTLVADISDAYTRVAKAAMSGDTSEY 125

Query: 131 RELSQMFKPGQYI---AVSVVELAPGNT--MLTTMPQHVNSGKRHTEIKKGAIFQAAVSS 185
            +L+++F+ G+ +   A+   +L  G    +L+  P  V+    H  IKKG IF  AV+ 
Sbjct: 126 HDLTELFQLGRIVYGKAIKTEKLDTGRVSLLLSLKPADVHGNLHHKSIKKGFIFSGAVAE 185

Query: 186 VEDHGYVMDLGIPNTTAFLPKKDANPEIDLGK 217
             +HGYV++ G+    AF+P +    ++ +G+
Sbjct: 186 ALEHGYVIESGVQGLQAFVPCEKPAQKLHVGQ 217


>AE014297-3525|AAF56280.2| 1430|Drosophila melanogaster CG5728-PA
           protein.
          Length = 1430

 Score = 74.1 bits (174), Expect = 2e-13
 Identities = 37/152 (24%), Positives = 83/152 (54%), Gaps = 5/152 (3%)

Query: 71  LSSKSLRPGINLLGRVIHVSDVKIKVSMPCKLLGNVMACHISESYNKLLEAYVEDKTEKV 130
           L+  +L+  + ++G V  ++   +++++P ++    +   IS++Y ++ +A +   T + 
Sbjct: 66  LNMDTLQEDMLVMGVVKELTATALQIALPGRMFARTLVADISDAYTRVAKAAMSGDTSEY 125

Query: 131 RELSQMFKPGQYI---AVSVVELAPGNT--MLTTMPQHVNSGKRHTEIKKGAIFQAAVSS 185
            +L+++F+ G+ +   A+   +L  G    +L+  P  V+    H  IKKG IF  AV+ 
Sbjct: 126 HDLTELFQLGRIVYGKAIKTEKLDTGRVSLLLSLKPADVHGNLHHKSIKKGFIFSGAVAE 185

Query: 186 VEDHGYVMDLGIPNTTAFLPKKDANPEIDLGK 217
             +HGYV++ G+    AF+P +    ++ +G+
Sbjct: 186 ALEHGYVIESGVQGLQAFVPCEKPAQKLHVGQ 217


  Database: fruitfly
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 24,830,863
  Number of sequences in database:  52,641
  
Lambda     K      H
   0.315    0.133    0.382 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,968,154
Number of Sequences: 52641
Number of extensions: 472616
Number of successful extensions: 823
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 821
Number of HSP's gapped (non-prelim): 2
length of query: 250
length of database: 24,830,863
effective HSP length: 83
effective length of query: 167
effective length of database: 20,461,660
effective search space: 3417097220
effective search space used: 3417097220
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (22.0 bits)
S2: 61 (28.7 bits)