Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA000756-TA|BGIBMGA000756-PA|IPR003029|RNA binding S1,
IPR008994|Nucleic acid-binding, OB-fold
(250 letters)
Database: celegans
27,539 sequences; 12,573,161 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U41534-7|AAB47599.3| 1743|Caenorhabditis elegans Hypothetical pr... 44 1e-04
Z81030-8|CAB02716.1| 421|Caenorhabditis elegans Hypothetical pr... 30 1.4
Z35637-2|CAA84688.1| 381|Caenorhabditis elegans Hypothetical pr... 29 4.2
AC087081-8|AAY55899.1| 499|Caenorhabditis elegans Hypothetical ... 28 7.3
Z75712-1|CAB00040.1| 724|Caenorhabditis elegans Hypothetical pr... 27 9.6
U89245-1|AAB49459.1| 612|Caenorhabditis elegans transcription f... 27 9.6
U28992-7|AAU45230.1| 240|Caenorhabditis elegans Hypothetical pr... 27 9.6
U28992-6|AAO38603.1| 1163|Caenorhabditis elegans Hypothetical pr... 27 9.6
AF003141-10|AAK21487.1| 612|Caenorhabditis elegans Uncoordinate... 27 9.6
AF001272-1|AAB84235.1| 612|Caenorhabditis elegans enhancer of s... 27 9.6
AF001271-1|AAB84234.1| 612|Caenorhabditis elegans enhancer of s... 27 9.6
>U41534-7|AAB47599.3| 1743|Caenorhabditis elegans Hypothetical
protein C16A3.3 protein.
Length = 1743
Score = 44.0 bits (99), Expect = 1e-04
Identities = 28/101 (27%), Positives = 44/101 (43%), Gaps = 8/101 (7%)
Query: 110 HISESYNKLLEAYVEDKTEKVRELSQMFKPGQYIAVSVVELAPGN----TMLTTMPQHVN 165
H SE K E + E+K E + F+ GQ + V+ GN T P +N
Sbjct: 100 HASEVSKKFTELFNEEKIE----IKNAFQLGQMVPFRVISKKQGNDKGKVKGTCNPARLN 155
Query: 166 SGKRHTEIKKGAIFQAAVSSVEDHGYVMDLGIPNTTAFLPK 206
+ G + AV S+E+ G ++D+G+ T F+ K
Sbjct: 156 KHLSPNMLAAGLVLHTAVVSIEEKGAILDVGLDQITGFIEK 196
>Z81030-8|CAB02716.1| 421|Caenorhabditis elegans Hypothetical
protein C01G10.10 protein.
Length = 421
Score = 30.3 bits (65), Expect = 1.4
Identities = 22/80 (27%), Positives = 37/80 (46%), Gaps = 1/80 (1%)
Query: 80 INLLGRVIHVSDVKIKVSMPCKLLGNVMACHISESYNKLLEAYVE-DKTEKVRELSQMFK 138
+NLL R+ S+ I + C L N +A HIS + E+ E +K K +
Sbjct: 248 LNLLERLRKNSETSIDIPDFCASLQNTVARHISSKLHIFFESLSEQEKLPKQLVIGGGVA 307
Query: 139 PGQYIAVSVVELAPGNTMLT 158
QYI ++ +L+ + + T
Sbjct: 308 ANQYIFGAISKLSAAHNVTT 327
>Z35637-2|CAA84688.1| 381|Caenorhabditis elegans Hypothetical
protein C03C10.3 protein.
Length = 381
Score = 28.7 bits (61), Expect = 4.2
Identities = 10/18 (55%), Positives = 15/18 (83%)
Query: 112 SESYNKLLEAYVEDKTEK 129
SE Y+KL+E Y+ D+TE+
Sbjct: 165 SEMYSKLIETYIRDETER 182
>AC087081-8|AAY55899.1| 499|Caenorhabditis elegans Hypothetical
protein Y82E9BL.18 protein.
Length = 499
Score = 27.9 bits (59), Expect = 7.3
Identities = 17/57 (29%), Positives = 27/57 (47%), Gaps = 2/57 (3%)
Query: 82 LLGRVIHVSDVKIKVSMPCKLLGNVMACHISESYNKLLEAYVEDKTEKVRELSQMFK 138
L GRV H +V I+ PC ++ V+ C E+ + +E + T E+ FK
Sbjct: 130 LRGRV-HTQNVSIRFQNPCNIIA-VLQCCEPENIHLAMEKPTDFFTSLTTEMHDQFK 184
>Z75712-1|CAB00040.1| 724|Caenorhabditis elegans Hypothetical
protein K04G2.3 protein.
Length = 724
Score = 27.5 bits (58), Expect = 9.6
Identities = 24/93 (25%), Positives = 42/93 (45%), Gaps = 4/93 (4%)
Query: 48 DGYLSDEAQDYLKTHKLNNNLIFLSSKSLRPGINLLGRVIHVSDVKIKVSMPCKLLGNVM 107
+G+L +A + K H + N + S L + R+IH SD I + PCK + +
Sbjct: 60 EGFLPPDAVGWEKEHSILINQQTMESLGLLARQPV--RIIHSSDSFIGIVWPCKEVALLK 117
Query: 108 ACHISE--SYNKLLEAYVEDKTEKVRELSQMFK 138
IS + +++ + EK++ LS K
Sbjct: 118 VSIISSRIARERMITLESCGRVEKLKSLSVTVK 150
>U89245-1|AAB49459.1| 612|Caenorhabditis elegans transcription
factor UNC-37 protein.
Length = 612
Score = 27.5 bits (58), Expect = 9.6
Identities = 13/34 (38%), Positives = 18/34 (52%), Gaps = 2/34 (5%)
Query: 192 VMDLGIPNTTAFLPKKDANPEIDLG--KSVNLNH 223
++D G+P T+F P P I G K + LNH
Sbjct: 288 IVDGGVPTPTSFPPDAQKGPGIPTGLKKKMELNH 321
>U28992-7|AAU45230.1| 240|Caenorhabditis elegans Hypothetical
protein T05C1.4c protein.
Length = 240
Score = 27.5 bits (58), Expect = 9.6
Identities = 20/60 (33%), Positives = 29/60 (48%), Gaps = 8/60 (13%)
Query: 113 ESYNKL--LEAYVEDKTEKVRELSQMFKPGQYIAVSVVELAPGNTMLTTMPQHVNSGKRH 170
++ NKL + A ED T R KP + A + + + G MLTTMPQ+ +H
Sbjct: 168 QNRNKLRKMHALNEDGTSPAR------KPAEINATNEILMVNGKEMLTTMPQNSFRSVQH 221
>U28992-6|AAO38603.1| 1163|Caenorhabditis elegans Hypothetical protein
T05C1.4b protein.
Length = 1163
Score = 27.5 bits (58), Expect = 9.6
Identities = 20/60 (33%), Positives = 29/60 (48%), Gaps = 8/60 (13%)
Query: 113 ESYNKL--LEAYVEDKTEKVRELSQMFKPGQYIAVSVVELAPGNTMLTTMPQHVNSGKRH 170
++ NKL + A ED T R KP + A + + + G MLTTMPQ+ +H
Sbjct: 1091 QNRNKLRKMHALNEDGTSPAR------KPAEINATNEILMVNGKEMLTTMPQNSFRSVQH 1144
>AF003141-10|AAK21487.1| 612|Caenorhabditis elegans Uncoordinated
protein 37 protein.
Length = 612
Score = 27.5 bits (58), Expect = 9.6
Identities = 13/34 (38%), Positives = 18/34 (52%), Gaps = 2/34 (5%)
Query: 192 VMDLGIPNTTAFLPKKDANPEIDLG--KSVNLNH 223
++D G+P T+F P P I G K + LNH
Sbjct: 288 IVDGGVPTPTSFPPDAQKGPGIPTGLKKKMELNH 321
>AF001272-1|AAB84235.1| 612|Caenorhabditis elegans enhancer of
split groucho protein.
Length = 612
Score = 27.5 bits (58), Expect = 9.6
Identities = 13/34 (38%), Positives = 18/34 (52%), Gaps = 2/34 (5%)
Query: 192 VMDLGIPNTTAFLPKKDANPEIDLG--KSVNLNH 223
++D G+P T+F P P I G K + LNH
Sbjct: 288 IVDGGVPTPTSFPPDAQKGPGIPTGLKKKMELNH 321
>AF001271-1|AAB84234.1| 612|Caenorhabditis elegans enhancer of
split groucho protein.
Length = 612
Score = 27.5 bits (58), Expect = 9.6
Identities = 13/34 (38%), Positives = 18/34 (52%), Gaps = 2/34 (5%)
Query: 192 VMDLGIPNTTAFLPKKDANPEIDLG--KSVNLNH 223
++D G+P T+F P P I G K + LNH
Sbjct: 288 IVDGGVPTPTSFPPDAQKGPGIPTGLKKKMELNH 321
Database: celegans
Posted date: Oct 5, 2007 11:13 AM
Number of letters in database: 12,573,161
Number of sequences in database: 27,539
Lambda K H
0.315 0.133 0.382
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 5,925,285
Number of Sequences: 27539
Number of extensions: 235308
Number of successful extensions: 391
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 9
Number of HSP's that attempted gapping in prelim test: 389
Number of HSP's gapped (non-prelim): 11
length of query: 250
length of database: 12,573,161
effective HSP length: 80
effective length of query: 170
effective length of database: 10,370,041
effective search space: 1762906970
effective search space used: 1762906970
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (22.0 bits)
S2: 58 (27.5 bits)
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