GeneModel BLAST Result against tribolium

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000755-TA|BGIBMGA000755-PA|undefined
         (230 letters)

Database: tribolium 
           317 sequences; 114,650 total letters

Searching....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ659250-1|ABG47448.1| 2700|Tribolium castaneum chitinase 10 pro...    22   4.6  
AM295015-1|CAL25730.1|  549|Tribolium castaneum ecdysone recepto...    22   4.6  

>DQ659250-1|ABG47448.1| 2700|Tribolium castaneum chitinase 10 protein.
          Length = 2700

 Score = 21.8 bits (44), Expect = 4.6
 Identities = 12/36 (33%), Positives = 19/36 (52%), Gaps = 1/36 (2%)

Query: 65   STPWSSETWDSAVFNSANSEKTLTPKSSTSYGATTP 100
            ST WSS T  S  + +  + +T T + +T+   T P
Sbjct: 1040 STWWSSTT-TSPWWTTTTTRRTTTTRPTTTSTTTRP 1074


>AM295015-1|CAL25730.1|  549|Tribolium castaneum ecdysone receptor
           (isoform A) protein.
          Length = 549

 Score = 21.8 bits (44), Expect = 4.6
 Identities = 11/33 (33%), Positives = 16/33 (48%)

Query: 65  STPWSSETWDSAVFNSANSEKTLTPKSSTSYGA 97
           S+P SS ++D    N     + L+P S   Y A
Sbjct: 136 SSPMSSGSYDPYSPNGKIGREDLSPSSLNGYSA 168


  Database: tribolium
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 114,650
  Number of sequences in database:  317
  
Lambda     K      H
   0.313    0.124    0.368 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 42,663
Number of Sequences: 317
Number of extensions: 1353
Number of successful extensions: 2
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2
length of query: 230
length of database: 114,650
effective HSP length: 55
effective length of query: 175
effective length of database: 97,215
effective search space: 17012625
effective search space used: 17012625
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (22.0 bits)
S2: 42 (21.0 bits)