Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA000755-TA|BGIBMGA000755-PA|undefined
(230 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_05_0531 - 25317446-25317762,25318000-25318160,25318239-253183... 29 2.4
02_03_0172 + 15965342-15965711,15967757-15967849,15967976-159680... 29 3.2
04_04_0451 - 25323178-25323241,25323614-25323741,25324533-253246... 28 5.5
03_02_0067 + 5364713-5364936,5365513-5367016,5367207-5368250,536... 28 5.5
03_02_0246 - 6772369-6772808,6773223-6775788 28 7.3
12_02_1270 + 27466516-27466621,27466722-27466885,27467385-274681... 27 9.6
>03_05_0531 -
25317446-25317762,25318000-25318160,25318239-25318336,
25318462-25318623,25319707-25319799,25319909-25319971,
25320549-25320694,25320804-25320961,25321033-25321225,
25321865-25322093
Length = 539
Score = 29.5 bits (63), Expect = 2.4
Identities = 33/138 (23%), Positives = 55/138 (39%), Gaps = 15/138 (10%)
Query: 73 WDSAVFNSANSEKTLTPKSSTSYGATTPFFSVSSKNTLTLLESAVSLNESHVMKPTIRAT 132
W +VF + + K++T K S +T P ++ S N + + S K I T
Sbjct: 365 WICSVFTAYRAPKSMTLKQKQSKASTQPMYNKGSPNPRQIQFLSPS-------KRDIGRT 417
Query: 133 QSMSSGTLSSWTLESFTSTGLIDSDILKVEYPWSPCTDMSGTDVYPSSVDTFESRKGSRA 192
S SS T W+ + + GL+ + K P D D Y S+ + RK S+
Sbjct: 418 TSNSSATQYGWS--NLANGGLVSPTLTKRVVP-----DNQDEDHY-STFHNIQPRKYSKE 469
Query: 193 AMNTLSKRELFPMNYLCT 210
+ +++ CT
Sbjct: 470 EWDDFTQKSTRKALMECT 487
>02_03_0172 +
15965342-15965711,15967757-15967849,15967976-15968060,
15968749-15968824,15968992-15969120,15969473-15969571,
15969661-15969762,15970257-15970415,15970507-15970602,
15971497-15971647,15971782-15971893,15972004-15972074,
15972548-15972984,15973421-15973492,15973713-15973810,
15974350-15974425,15975512-15975634,15975776-15975844
Length = 805
Score = 29.1 bits (62), Expect = 3.2
Identities = 14/41 (34%), Positives = 26/41 (63%)
Query: 79 NSANSEKTLTPKSSTSYGATTPFFSVSSKNTLTLLESAVSL 119
N ++++ + TP STS+ TP S ++NTL L+ S+ ++
Sbjct: 609 NDSDAQTSGTPSRSTSHILKTPEKSCHNENTLPLIPSSEAI 649
>04_04_0451 -
25323178-25323241,25323614-25323741,25324533-25324634,
25325314-25325382,25325489-25325557,25325646-25325720,
25325805-25325909,25326394-25326492,25326626-25328344,
25328629-25328931,25329031-25329129,25329733-25329850,
25329933-25330018,25330091-25330159,25330232-25330306,
25330675-25330772,25331271-25331432,25332391-25332556,
25332902-25332970,25333064-25333126,25333221-25333376,
25334027-25334365
Length = 1410
Score = 28.3 bits (60), Expect = 5.5
Identities = 16/64 (25%), Positives = 31/64 (48%)
Query: 84 EKTLTPKSSTSYGATTPFFSVSSKNTLTLLESAVSLNESHVMKPTIRATQSMSSGTLSSW 143
E+ + P S S+ + T + + + ++A ++S T+R +QS + G S
Sbjct: 520 ERVVQPSRSLSHASGTSALGYGTSAIVAMDKTAAISSDSSFSSNTLRLSQSKTVGRSSER 579
Query: 144 TLES 147
+LES
Sbjct: 580 SLES 583
>03_02_0067 +
5364713-5364936,5365513-5367016,5367207-5368250,
5368467-5368577,5368997-5369068,5369719-5369737,
5369838-5371142,5371317-5371397,5372441-5372604,
5373363-5373466,5373537-5373628,5374079-5374216,
5374370-5374426,5374820-5375046
Length = 1713
Score = 28.3 bits (60), Expect = 5.5
Identities = 21/63 (33%), Positives = 31/63 (49%), Gaps = 2/63 (3%)
Query: 88 TPKSSTSYGATTPFFSVSSKNTLTLLESAVSLNESHVMKPTIRAT-QSMSSGTLSSWTLE 146
T +++ G FSVSS ++ LES +L S ++ IR + SM G SS +E
Sbjct: 590 TFRAAVGTGVAASSFSVSSLSSDKCLESLAALLSSQTLRDAIRTSINSMPEGQ-SSRCIE 648
Query: 147 SFT 149
T
Sbjct: 649 ELT 651
>03_02_0246 - 6772369-6772808,6773223-6775788
Length = 1001
Score = 27.9 bits (59), Expect = 7.3
Identities = 18/73 (24%), Positives = 31/73 (42%)
Query: 87 LTPKSSTSYGATTPFFSVSSKNTLTLLESAVSLNESHVMKPTIRATQSMSSGTLSSWTLE 146
L+P S T+ F S+SS + L L+ ++L+ ++A S +W L
Sbjct: 605 LSPCRSHGVATTSTFGSLSSASKLLLVLGLLALSIVFAGAAVLKARSLKRSAEARAWRLT 664
Query: 147 SFTSTGLIDSDIL 159
+F D+L
Sbjct: 665 AFQRLDFAVDDVL 677
>12_02_1270 +
27466516-27466621,27466722-27466885,27467385-27468173,
27468263-27468479,27469078-27469256,27470233-27470474,
27470607-27470994
Length = 694
Score = 27.5 bits (58), Expect = 9.6
Identities = 16/63 (25%), Positives = 29/63 (46%)
Query: 165 WSPCTDMSGTDVYPSSVDTFESRKGSRAAMNTLSKRELFPMNYLCTPHEDTVLDWMLVKN 224
W+ + Y SS+ +F K S A +T + L + Y+ + ED D ++ +
Sbjct: 578 WTGTEAPESSGNYSSSLISFSCSKSSPIACDTAAGSPLPSLGYIYSFGEDNNKDTYVLSS 637
Query: 225 KGI 227
KG+
Sbjct: 638 KGV 640
Database: rice
Posted date: Oct 3, 2007 3:31 PM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.313 0.124 0.368
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 5,156,726
Number of Sequences: 37544
Number of extensions: 161229
Number of successful extensions: 327
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 322
Number of HSP's gapped (non-prelim): 6
length of query: 230
length of database: 14,793,348
effective HSP length: 80
effective length of query: 150
effective length of database: 11,789,828
effective search space: 1768474200
effective search space used: 1768474200
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (22.0 bits)
S2: 58 (27.5 bits)
- SilkBase 1999-2023 -