Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA000755-TA|BGIBMGA000755-PA|undefined
(230 letters)
Database: human
224,733 sequences; 73,234,838 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AJ298318-1|CAC83675.1| 1349|Homo sapiens mucin 5 protein. 34 0.48
BC105737-1|AAI05738.1| 566|Homo sapiens chromosome 6 open readi... 32 1.5
BC105735-1|AAI05736.1| 566|Homo sapiens chromosome 6 open readi... 32 1.5
AL669830-8|CAI18008.1| 566|Homo sapiens chromosome 6 open readi... 32 1.5
AL663093-1|CAI17705.1| 566|Homo sapiens chromosome 6 open readi... 32 1.5
BC117319-1|AAI17320.1| 257|Homo sapiens TPRXL protein protein. 31 2.5
AK092426-1|BAC03887.1| 258|Homo sapiens protein ( Homo sapiens ... 31 2.5
BC107478-1|AAI07479.1| 416|Homo sapiens C6orf205 protein protein. 30 5.9
AJ298317-1|CAC83674.1| 2448|Homo sapiens mucin 5 protein. 30 5.9
U97519-1|AAB61574.1| 528|Homo sapiens podocalyxin-like protein ... 30 7.7
BC112035-1|AAI12036.1| 526|Homo sapiens podocalyxin-like, precu... 30 7.7
BC093730-1|AAH93730.1| 526|Homo sapiens podocalyxin-like protein. 30 7.7
AK223573-1|BAD97293.1| 526|Homo sapiens podocalyxin-like precur... 30 7.7
AK055816-1|BAB71022.1| 518|Homo sapiens protein ( Homo sapiens ... 30 7.7
>AJ298318-1|CAC83675.1| 1349|Homo sapiens mucin 5 protein.
Length = 1349
Score = 33.9 bits (74), Expect = 0.48
Identities = 38/145 (26%), Positives = 62/145 (42%), Gaps = 11/145 (7%)
Query: 62 SMISTPWSSETWDSAVFNSANSEKTLTPKSSTSYGATTPFFSVS----SKNTLTLLESAV 117
S STP +S T + ++ ++ T T + T+ +TP S+S S T S +
Sbjct: 341 STTSTPQTSTT-SAPTTSTTSAPTTSTTSAPTTSTTSTPQTSISSAPTSSTTSAPTSSTI 399
Query: 118 SLNESHVMK-PTIRATQSMSSGTLSSWTLESF---TSTGLIDSDILKVEYPWSPCTDMSG 173
S + ++ PT T S ++ T S+ T + TS+ K S T SG
Sbjct: 400 SARTTSIISAPTTSTTSSPTTSTTSATTTSTTSAPTSSTTSTPQTSKTSAATSSTTSSSG 459
Query: 174 TDVYPSSVDTFESRKGSRAAMNTLS 198
T PS V T + S+ + + +S
Sbjct: 460 TT--PSPVTTTSTASVSKTSTSHVS 482
Score = 29.9 bits (64), Expect = 7.7
Identities = 24/87 (27%), Positives = 43/87 (49%), Gaps = 4/87 (4%)
Query: 62 SMISTPWSS--ETWDSAVFNSANSEKTLTPKSSTSYGATTPFFSVSSKNTLTL-LESAVS 118
S IS P +S T ++ +S + T TP++ST+ TT S + +T + S S
Sbjct: 766 STISAPTTSTTSTPQTSTISSPTTSTTPTPQTSTTSSPTTSTTSAPTTSTTSAPTTSTTS 825
Query: 119 LNESHVMK-PTIRATQSMSSGTLSSWT 144
++ + PT T + ++ T+S+ T
Sbjct: 826 TPQTSISSAPTSSTTSAPTASTISAPT 852
>BC105737-1|AAI05738.1| 566|Homo sapiens chromosome 6 open reading
frame 205 protein.
Length = 566
Score = 32.3 bits (70), Expect = 1.5
Identities = 25/81 (30%), Positives = 38/81 (46%), Gaps = 3/81 (3%)
Query: 74 DSAVFNSANSEKTLTPKSSTSYGATTPF---FSVSSKNTLTLLESAVSLNESHVMKPTIR 130
DS+ +S S T + S+TS GA+T S +S T S S S T
Sbjct: 319 DSSTTSSGASTATNSESSTTSSGASTATNSESSTTSSGASTATNSGSSTTSSGTSTATNS 378
Query: 131 ATQSMSSGTLSSWTLESFTST 151
+ ++SSG ++ T ES T++
Sbjct: 379 ESSTVSSGASTATTSESSTTS 399
>BC105735-1|AAI05736.1| 566|Homo sapiens chromosome 6 open reading
frame 205 protein.
Length = 566
Score = 32.3 bits (70), Expect = 1.5
Identities = 25/81 (30%), Positives = 38/81 (46%), Gaps = 3/81 (3%)
Query: 74 DSAVFNSANSEKTLTPKSSTSYGATTPF---FSVSSKNTLTLLESAVSLNESHVMKPTIR 130
DS+ +S S T + S+TS GA+T S +S T S S S T
Sbjct: 319 DSSTTSSGASTATNSESSTTSSGASTATNSESSTTSSGASTATNSGSSTTSSGTSTATNS 378
Query: 131 ATQSMSSGTLSSWTLESFTST 151
+ ++SSG ++ T ES T++
Sbjct: 379 ESSTVSSGASTATTSESSTTS 399
>AL669830-8|CAI18008.1| 566|Homo sapiens chromosome 6 open reading
frame 205 protein.
Length = 566
Score = 32.3 bits (70), Expect = 1.5
Identities = 25/81 (30%), Positives = 38/81 (46%), Gaps = 3/81 (3%)
Query: 74 DSAVFNSANSEKTLTPKSSTSYGATTPF---FSVSSKNTLTLLESAVSLNESHVMKPTIR 130
DS+ +S S T + S+TS GA+T S +S T S S S T
Sbjct: 319 DSSTTSSGASTATNSESSTTSSGASTATNSESSTTSSGASTATNSGSSTTSSGTSTATNS 378
Query: 131 ATQSMSSGTLSSWTLESFTST 151
+ ++SSG ++ T ES T++
Sbjct: 379 ESSTVSSGASTATTSESSTTS 399
>AL663093-1|CAI17705.1| 566|Homo sapiens chromosome 6 open reading
frame 205 protein.
Length = 566
Score = 32.3 bits (70), Expect = 1.5
Identities = 25/81 (30%), Positives = 38/81 (46%), Gaps = 3/81 (3%)
Query: 74 DSAVFNSANSEKTLTPKSSTSYGATTPF---FSVSSKNTLTLLESAVSLNESHVMKPTIR 130
DS+ +S S T + S+TS GA+T S +S T S S S T
Sbjct: 319 DSSTTSSGASTATNSESSTTSSGASTATNSESSTTSSGASTATNSGSSTTSSGTSTATNS 378
Query: 131 ATQSMSSGTLSSWTLESFTST 151
+ ++SSG ++ T ES T++
Sbjct: 379 ESSTVSSGASTATTSESSTTS 399
>BC117319-1|AAI17320.1| 257|Homo sapiens TPRXL protein protein.
Length = 257
Score = 31.5 bits (68), Expect = 2.5
Identities = 34/132 (25%), Positives = 59/132 (44%), Gaps = 5/132 (3%)
Query: 62 SMISTPWSSETWDS---AVFNSANSEKTLTPKSSTSYGATTPFFSVSSKNTLTLLESAVS 118
S S+P SS + S + NS++S + +P SS+S +++P S SS ++ + S+ S
Sbjct: 87 SSTSSPSSSSSSSSSSPSSSNSSSSSSSSSPSSSSSSSSSSPSSSSSSPSSSS--SSSSS 144
Query: 119 LNESHVMKPTIRATQSMSSGTLSSWTLESFTSTGLIDSDILKVEYPWSPCTDMSGTDVYP 178
S P+ ++ S SS + S + S + + S+ SP + S
Sbjct: 145 SPSSSSSSPSSSSSSSSSSSSSPSSSSPSSSGSSPSSSNSSPSSSSSSPSSSSSSPSPRS 204
Query: 179 SSVDTFESRKGS 190
SS + S S
Sbjct: 205 SSPSSSSSSTSS 216
>AK092426-1|BAC03887.1| 258|Homo sapiens protein ( Homo sapiens
cDNA FLJ35107 fis, clone PLACE6006871, moderately
similar to SUPPRESSOR PROTEIN SRP40. ).
Length = 258
Score = 31.5 bits (68), Expect = 2.5
Identities = 31/126 (24%), Positives = 56/126 (44%), Gaps = 2/126 (1%)
Query: 65 STPWSSETWDSAVFNSANSEKTLTPKSSTSYGATTPFFSVSSKNTLTLLESAVSLNESHV 124
S+ SS + + NS++S + +P SS+S +++P S SS ++ + S+ S S
Sbjct: 94 SSSSSSSSSSPSSSNSSSSSSSSSPSSSSSSSSSSPSSSSSSPSSSS--SSSSSSPSSSS 151
Query: 125 MKPTIRATQSMSSGTLSSWTLESFTSTGLIDSDILKVEYPWSPCTDMSGTDVYPSSVDTF 184
P+ ++ S SS + S + S + + S+ SP + S SS +
Sbjct: 152 SSPSSSSSSSSSSSSSPSSSSPSSSGSSPSSSNSSPSSSSSSPSSSSSSPSPRSSSPSSS 211
Query: 185 ESRKGS 190
S S
Sbjct: 212 SSSTSS 217
>BC107478-1|AAI07479.1| 416|Homo sapiens C6orf205 protein protein.
Length = 416
Score = 30.3 bits (65), Expect = 5.9
Identities = 25/79 (31%), Positives = 35/79 (44%), Gaps = 3/79 (3%)
Query: 74 DSAVFNSANSEKTLTPKSSTSYGATTPF---FSVSSKNTLTLLESAVSLNESHVMKPTIR 130
DS+ +S S T + S+TS GA+T S +S T S S S T
Sbjct: 154 DSSTTSSEASTATNSESSTTSSGASTATNSESSTTSSGASTATNSESSTTSSGASTATNS 213
Query: 131 ATQSMSSGTLSSWTLESFT 149
+ + SSGT ++ ES T
Sbjct: 214 GSSTTSSGTSTATNSESST 232
>AJ298317-1|CAC83674.1| 2448|Homo sapiens mucin 5 protein.
Length = 2448
Score = 30.3 bits (65), Expect = 5.9
Identities = 28/117 (23%), Positives = 49/117 (41%), Gaps = 11/117 (9%)
Query: 64 ISTPWSSETWD-SAVFNSANSEKTLTPKSSTSYGATTPFFSV-SSKNTLTLLESAVSLNE 121
IS S+ +W S + T TP++ST+Y TT S +++ T S S+
Sbjct: 2238 ISPTQSTSSWQKSRTTTLVTTSTTSTPQTSTTYAHTTSTTSAPTARTTSAPTTSTTSVPT 2297
Query: 122 SHVMK---------PTIRATQSMSSGTLSSWTLESFTSTGLIDSDILKVEYPWSPCT 169
+ + PT T + ++ T+S+ T + + G S +L +P T
Sbjct: 2298 TSTISGPKTTPSPVPTTSTTSAATTSTISAPTTSTTSVPGTTPSPVLTTSTTSAPTT 2354
>U97519-1|AAB61574.1| 528|Homo sapiens podocalyxin-like protein
protein.
Length = 528
Score = 29.9 bits (64), Expect = 7.7
Identities = 29/122 (23%), Positives = 56/122 (45%), Gaps = 2/122 (1%)
Query: 80 SANSEKTLTPKSSTSYGATTPFFSVSSKNTLTLLESAVSLNESHVMKPTIRATQ-SMSSG 138
S + T T S++ A TP SV+ T T +S V ++++ + +++AT +SS
Sbjct: 31 SPSQNATQTTTDSSNKTAPTPASSVTIMATDTAQQSTVPTSKANEILASVKATTLGVSSD 90
Query: 139 TLSSWTLESFTSTGLIDSDILKVEYPWSPCTDMSGTDVYPSSVDTFESRKGSRAAMNTLS 198
+ + TL S G +++ + + +P T + S+ T + + A NT S
Sbjct: 91 SPGTTTLAQQVS-GPVNTTVARGGGSGNPTTTIESPKSTKSADTTTVATSTATAKPNTTS 149
Query: 199 KR 200
+
Sbjct: 150 SQ 151
>BC112035-1|AAI12036.1| 526|Homo sapiens podocalyxin-like,
precursor isoform 2 protein.
Length = 526
Score = 29.9 bits (64), Expect = 7.7
Identities = 29/122 (23%), Positives = 56/122 (45%), Gaps = 2/122 (1%)
Query: 80 SANSEKTLTPKSSTSYGATTPFFSVSSKNTLTLLESAVSLNESHVMKPTIRATQ-SMSSG 138
S + T T S++ A TP SV+ T T +S V ++++ + +++AT +SS
Sbjct: 29 SPSQNATQTTTDSSNKTAPTPASSVTIMATDTAQQSTVPTSKANEILASVKATTLGVSSD 88
Query: 139 TLSSWTLESFTSTGLIDSDILKVEYPWSPCTDMSGTDVYPSSVDTFESRKGSRAAMNTLS 198
+ + TL S G +++ + + +P T + S+ T + + A NT S
Sbjct: 89 SPGTTTLAQQVS-GPVNTTVARGGGSGNPTTTIESPKSTKSADTTTVATSTATAKPNTTS 147
Query: 199 KR 200
+
Sbjct: 148 SQ 149
>BC093730-1|AAH93730.1| 526|Homo sapiens podocalyxin-like protein.
Length = 526
Score = 29.9 bits (64), Expect = 7.7
Identities = 29/122 (23%), Positives = 56/122 (45%), Gaps = 2/122 (1%)
Query: 80 SANSEKTLTPKSSTSYGATTPFFSVSSKNTLTLLESAVSLNESHVMKPTIRATQ-SMSSG 138
S + T T S++ A TP SV+ T T +S V ++++ + +++AT +SS
Sbjct: 29 SPSQNATQTTTDSSNKTAPTPASSVTIMATDTAQQSTVPTSKANEILASVKATTLGVSSD 88
Query: 139 TLSSWTLESFTSTGLIDSDILKVEYPWSPCTDMSGTDVYPSSVDTFESRKGSRAAMNTLS 198
+ + TL S G +++ + + +P T + S+ T + + A NT S
Sbjct: 89 SPGTTTLAQQVS-GPVNTTVARGGGSGNPTTTIESPKSTKSADTTTVATSTATAKPNTTS 147
Query: 199 KR 200
+
Sbjct: 148 SQ 149
>AK223573-1|BAD97293.1| 526|Homo sapiens podocalyxin-like precursor
variant protein.
Length = 526
Score = 29.9 bits (64), Expect = 7.7
Identities = 29/122 (23%), Positives = 56/122 (45%), Gaps = 2/122 (1%)
Query: 80 SANSEKTLTPKSSTSYGATTPFFSVSSKNTLTLLESAVSLNESHVMKPTIRATQ-SMSSG 138
S + T T S++ A TP SV+ T T +S V ++++ + +++AT +SS
Sbjct: 29 SPSQNATQTTTDSSNKTAPTPASSVTIMATDTAQQSTVPTSKANEILASVKATTLGVSSD 88
Query: 139 TLSSWTLESFTSTGLIDSDILKVEYPWSPCTDMSGTDVYPSSVDTFESRKGSRAAMNTLS 198
+ + TL S G +++ + + +P T + S+ T + + A NT S
Sbjct: 89 SPGTTTLAQQVS-GPVNTTVARGGGSGNPTTTIESPKSTKSADTTTVATSTATAKPNTTS 147
Query: 199 KR 200
+
Sbjct: 148 SQ 149
>AK055816-1|BAB71022.1| 518|Homo sapiens protein ( Homo sapiens
cDNA FLJ31254 fis, clone KIDNE2005526, highly similar to
Homo sapiens podocalyxin-like protein mRNA. ).
Length = 518
Score = 29.9 bits (64), Expect = 7.7
Identities = 29/122 (23%), Positives = 56/122 (45%), Gaps = 2/122 (1%)
Query: 80 SANSEKTLTPKSSTSYGATTPFFSVSSKNTLTLLESAVSLNESHVMKPTIRATQ-SMSSG 138
S + T T S++ A TP SV+ T T +S V ++++ + +++AT +SS
Sbjct: 21 SPSQNATQTTTDSSNKTAPTPASSVTIMATDTAQQSTVPTSKANEILASVKATTLGVSSD 80
Query: 139 TLSSWTLESFTSTGLIDSDILKVEYPWSPCTDMSGTDVYPSSVDTFESRKGSRAAMNTLS 198
+ + TL S G +++ + + +P T + S+ T + + A NT S
Sbjct: 81 SPGTTTLAQQVS-GPVNTTVARGGGSGNPTTTIESPKSTKSADTTTVATSTATAKPNTTS 139
Query: 199 KR 200
+
Sbjct: 140 SQ 141
Database: human
Posted date: Oct 5, 2007 11:13 AM
Number of letters in database: 73,234,838
Number of sequences in database: 224,733
Lambda K H
0.313 0.124 0.368
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 27,405,729
Number of Sequences: 224733
Number of extensions: 874609
Number of successful extensions: 1622
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 12
Number of HSP's that attempted gapping in prelim test: 1611
Number of HSP's gapped (non-prelim): 23
length of query: 230
length of database: 73,234,838
effective HSP length: 88
effective length of query: 142
effective length of database: 53,458,334
effective search space: 7591083428
effective search space used: 7591083428
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (22.0 bits)
S2: 64 (29.9 bits)
- SilkBase 1999-2023 -