GeneModel BLAST Result against bee

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000755-TA|BGIBMGA000755-PA|undefined
         (230 letters)

Database: bee 
           429 sequences; 140,377 total letters

Searching.....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.             24   1.0  
DQ667193-1|ABG75745.1|  510|Apis mellifera cys-loop ligand-gated...    23   3.1  
AF084556-1|AAC71015.1|  652|Apis mellifera pipsqueak protein.          23   3.1  
DQ869051-1|ABJ09598.1|  581|Apis mellifera pyrokinin-like recept...    21   9.6  

>AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.
          Length = 1598

 Score = 24.2 bits (50), Expect = 1.0
 Identities = 20/61 (32%), Positives = 28/61 (45%), Gaps = 8/61 (13%)

Query: 79  NSANSEKTLTPKSSTSYGATTPFFSVSSKNTLTLLESAVSLNESHVMKPTIRATQSMSSG 138
           + A S    TP + T+ GATT   + S+  T     SAV          T  AT +M++G
Sbjct: 206 SKAGSTDASTPATVTTTGATTTLPAASATGTGPATPSAV--------VATSNATAAMTTG 257

Query: 139 T 139
           T
Sbjct: 258 T 258


>DQ667193-1|ABG75745.1|  510|Apis mellifera cys-loop ligand-gated
           ion channel subunit protein.
          Length = 510

 Score = 22.6 bits (46), Expect = 3.1
 Identities = 7/16 (43%), Positives = 11/16 (68%)

Query: 215 TVLDWMLVKNKGICVS 230
           T LDW L+ + G C++
Sbjct: 305 TALDWFLLMSFGYCIA 320


>AF084556-1|AAC71015.1|  652|Apis mellifera pipsqueak protein.
          Length = 652

 Score = 22.6 bits (46), Expect = 3.1
 Identities = 11/32 (34%), Positives = 19/32 (59%), Gaps = 1/32 (3%)

Query: 65  STPWSSETWDSAVFNSANSEKTLTPKSSTSYG 96
           S  W+ E  D+A+    N + +LT K+S ++G
Sbjct: 408 SKSWTQEDMDAALEALRNHDMSLT-KASATFG 438


>DQ869051-1|ABJ09598.1|  581|Apis mellifera pyrokinin-like receptor
           2 protein.
          Length = 581

 Score = 21.0 bits (42), Expect = 9.6
 Identities = 12/48 (25%), Positives = 21/48 (43%)

Query: 106 SKNTLTLLESAVSLNESHVMKPTIRATQSMSSGTLSSWTLESFTSTGL 153
           +KN L  LE+   L       P+I +  ++S+ +L  +    F    L
Sbjct: 521 TKNNLMKLETTPVLPSRFQSHPSIDSANTISNSSLQDYDETEFNGMEL 568


  Database: bee
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 140,377
  Number of sequences in database:  429
  
Lambda     K      H
   0.313    0.124    0.368 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 52,540
Number of Sequences: 429
Number of extensions: 1778
Number of successful extensions: 4
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of query: 230
length of database: 140,377
effective HSP length: 56
effective length of query: 174
effective length of database: 116,353
effective search space: 20245422
effective search space used: 20245422
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (22.0 bits)
S2: 42 (21.0 bits)