Silkworm BLAST Result against tribolium

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000754-TA|BGIBMGA000754-PA|IPR005289|GTP-binding,
IPR002917|GTP-binding protein, HSR1-related
         (333 letters)

Database: tribolium 
           317 sequences; 114,650 total letters

Searching....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY800247-1|AAV66724.1|  790|Tribolium castaneum pangolin protein.      23   2.4  
AY800246-1|AAV66723.1|  682|Tribolium castaneum pangolin protein.      23   2.4  
AJ621748-1|CAF21851.1|  228|Tribolium castaneum zinc finger tran...    22   7.2  

>AY800247-1|AAV66724.1|  790|Tribolium castaneum pangolin protein.
          Length = 790

 Score = 23.4 bits (48), Expect = 2.4
 Identities = 15/41 (36%), Positives = 20/41 (48%), Gaps = 1/41 (2%)

Query: 184 RSLMMKMRINNDPCIFMLDTPGI-LEPSVTNIEMGLKLALC 223
           + L MK+  NND C+ +  T    LE S  N    L+  LC
Sbjct: 296 QDLSMKLSKNNDQCLDLSKTKETNLEKSNLNHNEQLRKYLC 336


>AY800246-1|AAV66723.1|  682|Tribolium castaneum pangolin protein.
          Length = 682

 Score = 23.4 bits (48), Expect = 2.4
 Identities = 15/41 (36%), Positives = 20/41 (48%), Gaps = 1/41 (2%)

Query: 184 RSLMMKMRINNDPCIFMLDTPGI-LEPSVTNIEMGLKLALC 223
           + L MK+  NND C+ +  T    LE S  N    L+  LC
Sbjct: 188 QDLSMKLSKNNDQCLDLSKTKETNLEKSNLNHNEQLRKYLC 228


>AJ621748-1|CAF21851.1|  228|Tribolium castaneum zinc finger
           transcription factor protein.
          Length = 228

 Score = 21.8 bits (44), Expect = 7.2
 Identities = 10/38 (26%), Positives = 17/38 (44%)

Query: 101 QNVDNVVFTNSKDQFCRGLKTIKPLMVDLIKNSNRYNR 138
           +N    V        C+  +  K L+V + K+ +RY R
Sbjct: 43  KNNGECVINKKNRTACKACRLRKCLLVGMSKSGSRYGR 80


  Database: tribolium
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 114,650
  Number of sequences in database:  317
  
Lambda     K      H
   0.323    0.140    0.412 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 72,855
Number of Sequences: 317
Number of extensions: 2999
Number of successful extensions: 6
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 5
Number of HSP's gapped (non-prelim): 3
length of query: 333
length of database: 114,650
effective HSP length: 57
effective length of query: 276
effective length of database: 96,581
effective search space: 26656356
effective search space used: 26656356
T: 11
A: 40
X1: 16 ( 7.5 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.9 bits)
S2: 43 (21.4 bits)