Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA000754-TA|BGIBMGA000754-PA|IPR005289|GTP-binding,
IPR002917|GTP-binding protein, HSR1-related
(333 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC25B2.04c |||mitochondrial ribosome assembly protein|Schizosa... 130 3e-31
SPBC26H8.08c |grn1||GTPase Grn1 |Schizosaccharomyces pombe|chr 2... 72 1e-13
SPAC6F6.03c |||ribosome export GTPase|Schizosaccharomyces pombe|... 58 2e-09
SPAC222.05c |mss1||COX RNA-associated protein|Schizosaccharomyce... 40 4e-04
SPAC3F10.16c |||GTP binding protein, HSR1-related|Schizosaccharo... 36 0.006
SPAC1556.01c |rad50|SPAP4C9.01c|DNA repair protein Rad50|Schizos... 32 0.13
SPAC4F10.11 |spn1||septin Spn1|Schizosaccharomyces pombe|chr 1||... 29 0.93
SPBC3B9.03 |||signal recognition particle receptor alpha subunit... 29 1.2
SPAC821.06 |spn2||septin Spn2|Schizosaccharomyces pombe|chr 1|||... 29 1.2
SPBC1773.14 |arg7||argininosuccinate lyase |Schizosaccharomyces ... 28 1.6
SPBC17G9.04c |nup85||nucleoporin Nup85|Schizosaccharomyces pombe... 28 1.6
SPACUNK4.13c |||GTPase Ylf2 |Schizosaccharomyces pombe|chr 1|||M... 28 1.6
SPBC651.01c |nog1|SPBC725.18c|GTP binding protein Nog1 |Schizosa... 28 2.1
SPAC17H9.09c |ras1|ste5|GTPase Ras1|Schizosaccharomyces pombe|ch... 27 2.8
SPAC4D7.04c |||cis-prenyltransferase |Schizosaccharomyces pombe|... 27 3.7
SPAC12B10.01c ||SPAC31F12.02c, SPAC637.15c|ubiquitin-protein lig... 27 4.9
SPAC6B12.10c |spp1|pri1|DNA primase catalytic subunit Spp1 |Schi... 27 4.9
SPBC16D10.04c |dna2||DNA replication endonuclease-helicase Dna2|... 26 6.5
SPBC405.04c |ypt7||GTPase Ypt7|Schizosaccharomyces pombe|chr 2||... 26 6.5
SPBC25B2.02c |mam1|SPBC2G5.09c|M-factor transporter Mam1 |Schizo... 26 6.5
SPAP8A3.11c |||mitochondrial GTPase Mtg2|Schizosaccharomyces pom... 26 8.6
>SPBC25B2.04c |||mitochondrial ribosome assembly
protein|Schizosaccharomyces pombe|chr 2|||Manual
Length = 328
Score = 130 bits (314), Expect = 3e-31
Identities = 99/304 (32%), Positives = 147/304 (48%), Gaps = 25/304 (8%)
Query: 26 WFPGHMNKGLKQMQRKLKSVDCVIEVHDARIPFTGRNPIFTSTLTGAKPHILVLNKRDLV 85
W+PGHMNK LK+++ S D +EV DARIP T RN + L K I+V NK DL
Sbjct: 17 WYPGHMNKTLKRLKNLTSSNDIFVEVRDARIPLTSRNYVMEDFLN-KKNRIIVYNKCDLA 75
Query: 86 ITSLIP------RIKDQLKAEQNVD---NVVFTNSKDQFCRGLKTIKPLMVDLIKNSNRY 136
T RI++ + QNV+ T K F + P + R
Sbjct: 76 DTFHTKAKVSKHRIQNLAQQFQNVECWFKETSTPEKSAFITPYVSKAPYFAKELLRLIRT 135
Query: 137 ---NRSEELEYNVMIIGVPNVGKSSMINMLRSRNISGRHVLPVGAVAGVTRSLMMKMRIN 193
S V +G+PN GKSS++N LR+ + VG GVT+ + +R+
Sbjct: 136 LVDQASANGRVYVYFVGMPNTGKSSILNSLRNVALRKSKSAIVGNYPGVTKRISEIVRLF 195
Query: 194 NDPCIFMLDTPGILEPSVTNIEMGLKLALCAALQDHLVGEEIIADYLLYWLNKHRKFKYV 253
ND ++MLDTPGI+ PS+T E LKL+L +++ +V + DYLL+ LN+ Y
Sbjct: 196 NDMDVYMLDTPGIMTPSITKPEDMLKLSLVGCVKEGIVHPVTVVDYLLFHLNRIDPSLYS 255
Query: 254 DFMGLDEPCDDINKVLLSGAIKYNRIRKVRDFDGKVRDVPDLLETSRHIIKAFRTGELGK 313
+ P +D+++ L + A K ++ K FD S ++I+ +R G LG+
Sbjct: 256 KW---SLPTNDVDEFLQNTAYKARKLTK-GGFDENF--------VSNYVIQQYRIGRLGR 303
Query: 314 VILD 317
LD
Sbjct: 304 FQLD 307
>SPBC26H8.08c |grn1||GTPase Grn1 |Schizosaccharomyces pombe|chr
2|||Manual
Length = 470
Score = 72.1 bits (169), Expect = 1e-13
Identities = 65/225 (28%), Positives = 121/225 (53%), Gaps = 21/225 (9%)
Query: 36 KQMQRKLKSVDCVIEVHDARIPFTGRNP-IFTSTLTGA---KPHILVLNKRDLVITSLIP 91
K+ ++ +++ D ++ V DAR P R+ + L + K I V+NK DLV + ++
Sbjct: 154 KEFKKVVEASDVILYVLDARDPEGTRSKDVERQVLASSAEEKRLIFVINKIDLVPSEVLN 213
Query: 92 RIKDQLK------AEQNVDNVVFTNSKDQFCRGLKTIKPLMVDLIKNSNRYNRSEELEYN 145
+ L+ ++ +N K Q TI +L+K+ Y+ ++L+ +
Sbjct: 214 KWVTYLRNFFPTIPMRSASGSGNSNLKHQSASASSTIS----NLLKSLKSYSAKKKLKSS 269
Query: 146 --VMIIGVPNVGKSSMINMLRSRNISGRHV-LPVGAVAGVTRSLMMKMRINNDPCIFMLD 202
V +IG PNVGKSS+IN L +R+ +GR P G VAG+T SL +++++N + ++D
Sbjct: 270 LTVGVIGYPNVGKSSVINALVNRSANGRSAPCPAGNVAGMTTSL-REVKLDNK--LRLVD 326
Query: 203 TPGILEPSVTNIEMGLKLALCAALQDHLVGEEI-IADYLLYWLNK 246
+PGI+ PS + + +L + A+ V + + +A Y+L +L++
Sbjct: 327 SPGIVFPSSDSKDDLYRLVMLNAVSSTKVDDPVAVASYILQFLSR 371
>SPAC6F6.03c |||ribosome export GTPase|Schizosaccharomyces pombe|chr
1|||Manual
Length = 537
Score = 58.0 bits (134), Expect = 2e-09
Identities = 63/247 (25%), Positives = 112/247 (45%), Gaps = 20/247 (8%)
Query: 29 GHMNKGLKQMQRKLKSVDCVIEVHDARIPFTGRNPIFTSTLTGAKPH---ILVLNKRDLV 85
G + ++ + + S D +I+V DAR P R L H ILVLNK DLV
Sbjct: 201 GQSKRIWNELYKVIDSSDVLIQVLDARDPVGTRCGTVERYLRNEASHKHMILVLNKVDLV 260
Query: 86 ITSLIPRIKDQLKAEQNVDNVVFTNSKDQFCRGLKTIKPLMVDLIKNSNRYNRSEELEYN 145
TS + ++ A++ + + F +G ++ +++ + S++ + +
Sbjct: 261 PTS-VAAAWVKILAKEYPTIAFHASINNSFGKGS------LIQILRQFASLH-SDKKQIS 312
Query: 146 VMIIGVPNVGKSSMINMLRSRNISGRHVLPVGAVAGVTRSLMMKMRINNDPCIFMLDTPG 205
V +IG PN GKSS+IN LR + + +V P+ V + + + R IF++D PG
Sbjct: 313 VGLIGFPNAGKSSIINTLRKKKVC--NVAPIPGETKVWQYVALMKR------IFLIDCPG 364
Query: 206 ILEPSVTNIEMGLKLALCAALQDHLVGEEIIADYLLYWLNKHRKFKYVDFMGLDEPCDDI 265
I+ PS + + L L +++ E I L KH + Y + G ++ + +
Sbjct: 365 IVPPSSNDSDAELLLKGVVRVENVSNPEAYIPTVLSRCKVKHLERTY-EISGWNDSTEFL 423
Query: 266 NKVLLSG 272
K+ G
Sbjct: 424 AKLAKKG 430
>SPAC222.05c |mss1||COX RNA-associated protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 496
Score = 40.3 bits (90), Expect = 4e-04
Identities = 32/89 (35%), Positives = 50/89 (56%), Gaps = 9/89 (10%)
Query: 145 NVMIIGVPNVGKSSMINMLRSRNISGRHVLPVGAVAGVTR-SLMMKMRINNDPCIFMLDT 203
NV I+G N GKSS+IN+L +R IS V +G TR ++ + + IN P + + DT
Sbjct: 241 NVAILGPSNAGKSSLINLLANRRIS-----IVSPQSGTTRDAIEVLVDINGFP-VLLSDT 294
Query: 204 PGILE-PSVTNIE-MGLKLALCAALQDHL 230
G+ + V IE +G+++A A + L
Sbjct: 295 AGLRKGEDVQEIEKIGIEIAKARAEESQL 323
>SPAC3F10.16c |||GTP binding protein,
HSR1-related|Schizosaccharomyces pombe|chr 1|||Manual
Length = 616
Score = 36.3 bits (80), Expect = 0.006
Identities = 25/73 (34%), Positives = 35/73 (47%), Gaps = 8/73 (10%)
Query: 148 IIGVPNVGKSSMINMLRSRNISGRHVLPVGAVAGVTRSLMMKMRINNDPCIFMLDTPGIL 207
++G PNVGKSS IN L G + V + G T+ IN + +LD PG++
Sbjct: 306 LVGYPNVGKSSTINAL-----VGSKKVSVSSTPGKTKHF---QTINLSEKVSLLDCPGLV 357
Query: 208 EPSVTNIEMGLKL 220
PS + L L
Sbjct: 358 FPSFATTQADLVL 370
>SPAC1556.01c |rad50|SPAP4C9.01c|DNA repair protein
Rad50|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1290
Score = 31.9 bits (69), Expect = 0.13
Identities = 20/75 (26%), Positives = 41/75 (54%), Gaps = 2/75 (2%)
Query: 259 DEPCDDINKVLLSGAIKYNRIRKV-RDFDGKVRDVPDLLETSRHIIKAFRTGELGKVILD 317
DE +D+ K+ + A K +++ + + K D+ LL++ R +++ TG+LGK+ +
Sbjct: 295 DESSEDLEKLHSNFAEKVKEEQELYKSLEKKRSDLESLLKSRRELLEKL-TGDLGKIQGE 353
Query: 318 IDLLENRPSNKQEVL 332
I+ LE K ++
Sbjct: 354 IESLEKLKVKKSTMI 368
>SPAC4F10.11 |spn1||septin Spn1|Schizosaccharomyces pombe|chr
1|||Manual
Length = 469
Score = 29.1 bits (62), Expect = 0.93
Identities = 17/82 (20%), Positives = 42/82 (51%), Gaps = 6/82 (7%)
Query: 93 IKDQLKAEQNVDNVVFTNSKDQFCRGLKTIKPLM---VDLIKNSNRYNRS---EELEYNV 146
++ + +N + + NS+ +F + I+ + V N+++R + +NV
Sbjct: 39 VEAAISENKNEEKPIQDNSEQEFNPHVSIIQRQLNGYVGFASLPNQWHRRCVRQGFNFNV 98
Query: 147 MIIGVPNVGKSSMINMLRSRNI 168
+++G GKS+++N L +R++
Sbjct: 99 LVLGESGSGKSTLVNTLLNRDV 120
>SPBC3B9.03 |||signal recognition particle receptor alpha subunit
Srp101|Schizosaccharomyces pombe|chr 2|||Manual
Length = 547
Score = 28.7 bits (61), Expect = 1.2
Identities = 23/89 (25%), Positives = 40/89 (44%), Gaps = 3/89 (3%)
Query: 75 HILVLNKRDLVITSLIPRIKDQL--KAEQNVDNVVFTNSKDQFCRGLKTIKP-LMVDLIK 131
H+ N + + L +K L K + D V T +K R + + P +DL+
Sbjct: 271 HLTKKNVANSIALELCESVKASLINKKVGSFDTVKNTVNKAFRDRLTQILTPSTSLDLLH 330
Query: 132 NSNRYNRSEELEYNVMIIGVPNVGKSSMI 160
+ ++E Y + +IGV VGKS+ +
Sbjct: 331 SIRSVRKNENRPYTISLIGVNGVGKSTTL 359
>SPAC821.06 |spn2||septin Spn2|Schizosaccharomyces pombe|chr
1|||Manual
Length = 331
Score = 28.7 bits (61), Expect = 1.2
Identities = 11/26 (42%), Positives = 19/26 (73%)
Query: 143 EYNVMIIGVPNVGKSSMINMLRSRNI 168
++NVM++G GKS++IN L S ++
Sbjct: 32 QFNVMVVGPSGSGKSTLINTLFSAHL 57
>SPBC1773.14 |arg7||argininosuccinate lyase |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 461
Score = 28.3 bits (60), Expect = 1.6
Identities = 21/105 (20%), Positives = 52/105 (49%), Gaps = 6/105 (5%)
Query: 86 ITSLIPRIKDQLKAEQNVDNVVFTNSKDQFCRGLKTIKPLMVDLIKNSNRYNRSEELEYN 145
+T +I + +L ++ ++ V T+ + CR +K ++ +++L+K + E+E +
Sbjct: 97 LTEIIGDVAGKLHTGRSRNDQVTTDLRLWLCRKIKEVEVYVINLLK---VFTNRAEMEID 153
Query: 146 VMIIGVPNVGKSSMINMLRSRNISGRHVLPVGAVAGVTRSLMMKM 190
V++ G ++ ++ + R + H LP+ G R L ++
Sbjct: 154 VIMSGYTHLQRAQPV---RWSHFLMSHALPLLGDLGRLRQLYTRV 195
>SPBC17G9.04c |nup85||nucleoporin Nup85|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 675
Score = 28.3 bits (60), Expect = 1.6
Identities = 22/78 (28%), Positives = 38/78 (48%), Gaps = 5/78 (6%)
Query: 258 LDEPCDDINKVL-LSGAIKYNRIRKVRDFDGKVRDVPDLLETSRHIIKAFRTGELGKVIL 316
L E D++ +L S RIR V DF+ + + L RH++K R ++ +L
Sbjct: 245 LKETVDELIDILRYSPCTHQKRIRSVSDFERRWKLWRSRLANLRHVVKKHR--DIDSEVL 302
Query: 317 D--IDLLENRPSNKQEVL 332
D + LL+ NK+ ++
Sbjct: 303 DDFVVLLDILNGNKEVIM 320
>SPACUNK4.13c |||GTPase Ylf2 |Schizosaccharomyces pombe|chr
1|||Manual
Length = 407
Score = 28.3 bits (60), Expect = 1.6
Identities = 10/32 (31%), Positives = 18/32 (56%)
Query: 148 IIGVPNVGKSSMINMLRSRNISGRHVLPVGAV 179
I+G+PN+GKS++ +L N+ P +
Sbjct: 50 IVGMPNIGKSTLFQILTKTNLGNPANYPFATI 81
>SPBC651.01c |nog1|SPBC725.18c|GTP binding protein Nog1
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 642
Score = 27.9 bits (59), Expect = 2.1
Identities = 21/63 (33%), Positives = 32/63 (50%), Gaps = 6/63 (9%)
Query: 146 VMIIGVPNVGKSSMINMLRSRNISGRHVLPVGAVAGVTRSLMMKMRINNDPCIFMLDTPG 205
+++ G PNVGKSS +N + R + V A T+SL + ++DTPG
Sbjct: 171 LLVCGYPNVGKSSFMNKVT------RAQVDVQPYAFTTKSLFVGHFDYKYLRWQVIDTPG 224
Query: 206 ILE 208
IL+
Sbjct: 225 ILD 227
>SPAC17H9.09c |ras1|ste5|GTPase Ras1|Schizosaccharomyces pombe|chr
1|||Manual
Length = 219
Score = 27.5 bits (58), Expect = 2.8
Identities = 19/68 (27%), Positives = 33/68 (48%), Gaps = 5/68 (7%)
Query: 74 PHILVLNKRDLVITSLIPRIKDQLKAEQNVDNVVFTNSKDQFCRGLKTIKPLMVDLIKNS 133
P +LV NK DL ++ R + + A+ V T++K + ++ L++
Sbjct: 115 PVVLVANKCDLEAERVVSRAEGEQLAKSMHCLYVETSAKLRL-----NVEEAFYSLVRTI 169
Query: 134 NRYNRSEE 141
RYN+SEE
Sbjct: 170 RRYNKSEE 177
>SPAC4D7.04c |||cis-prenyltransferase |Schizosaccharomyces pombe|chr
1|||Manual
Length = 264
Score = 27.1 bits (57), Expect = 3.7
Identities = 13/53 (24%), Positives = 29/53 (54%)
Query: 203 TPGILEPSVTNIEMGLKLALCAALQDHLVGEEIIADYLLYWLNKHRKFKYVDF 255
TP ++ + + +K +L L G E ++D++L+ +K+ + K++DF
Sbjct: 188 TPEDIDEDIFEKNLLIKDSLPLDLLIRTSGVERLSDFMLWQCHKNTEIKFIDF 240
>SPAC12B10.01c ||SPAC31F12.02c, SPAC637.15c|ubiquitin-protein ligase
E3 |Schizosaccharomyces pombe|chr 1|||Manual
Length = 1647
Score = 26.6 bits (56), Expect = 4.9
Identities = 11/31 (35%), Positives = 17/31 (54%)
Query: 168 ISGRHVLPVGAVAGVTRSLMMKMRINNDPCI 198
I+G LP+G AG+ L + R+N P +
Sbjct: 1573 ITGSRKLPIGGFAGLNPPLTVVRRLNEPPYV 1603
>SPAC6B12.10c |spp1|pri1|DNA primase catalytic subunit Spp1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 454
Score = 26.6 bits (56), Expect = 4.9
Identities = 9/37 (24%), Positives = 21/37 (56%)
Query: 66 TSTLTGAKPHILVLNKRDLVITSLIPRIKDQLKAEQN 102
+ ++ P ++ + K+D+V+T L PR+ ++ N
Sbjct: 305 SGSIASISPSVIAIAKQDIVLTYLYPRLDVEVSRHLN 341
>SPBC16D10.04c |dna2||DNA replication endonuclease-helicase
Dna2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1398
Score = 26.2 bits (55), Expect = 6.5
Identities = 17/70 (24%), Positives = 36/70 (51%), Gaps = 2/70 (2%)
Query: 143 EYNVMIIGVPNVGKSSMI-NMLRSRNISGRHVLPVGAVAGVTRSLMMKMRINNDPCIFML 201
E+ +I+G+P GK++ I +++RS + +L ++++K++ D I L
Sbjct: 948 EHYSLILGMPGTGKTTTISSLIRSLLAKKKKILLTSFTHLAVDNILIKLK-GCDSTIVRL 1006
Query: 202 DTPGILEPSV 211
+P + P V
Sbjct: 1007 GSPHKIHPLV 1016
>SPBC405.04c |ypt7||GTPase Ypt7|Schizosaccharomyces pombe|chr
2|||Manual
Length = 205
Score = 26.2 bits (55), Expect = 6.5
Identities = 12/33 (36%), Positives = 20/33 (60%)
Query: 146 VMIIGVPNVGKSSMINMLRSRNISGRHVLPVGA 178
V+I+G VGK+S++N +R S + +GA
Sbjct: 11 VIILGESGVGKTSIMNQYVNRKFSKDYKATIGA 43
>SPBC25B2.02c |mam1|SPBC2G5.09c|M-factor transporter Mam1
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1336
Score = 26.2 bits (55), Expect = 6.5
Identities = 11/31 (35%), Positives = 18/31 (58%)
Query: 134 NRYNRSEELEYNVMIIGVPNVGKSSMINMLR 164
N + S E V I+G+ GKS+++ +LR
Sbjct: 1119 NNVSLSIEAREKVAIVGISGSGKSTLVELLR 1149
>SPAP8A3.11c |||mitochondrial GTPase Mtg2|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 419
Score = 25.8 bits (54), Expect = 8.6
Identities = 8/16 (50%), Positives = 14/16 (87%)
Query: 148 IIGVPNVGKSSMINML 163
++G+PN GKS+++N L
Sbjct: 241 LVGLPNAGKSTLLNCL 256
Database: spombe
Posted date: Oct 3, 2007 3:31 PM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.323 0.140 0.412
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,486,957
Number of Sequences: 5004
Number of extensions: 61743
Number of successful extensions: 180
Number of sequences better than 10.0: 21
Number of HSP's better than 10.0 without gapping: 16
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 159
Number of HSP's gapped (non-prelim): 24
length of query: 333
length of database: 2,362,478
effective HSP length: 73
effective length of query: 260
effective length of database: 1,997,186
effective search space: 519268360
effective search space used: 519268360
T: 11
A: 40
X1: 16 ( 7.5 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.9 bits)
S2: 54 (25.8 bits)
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