Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA000754-TA|BGIBMGA000754-PA|IPR005289|GTP-binding,
IPR002917|GTP-binding protein, HSR1-related
(333 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_24089| Best HMM Match : No HMM Matches (HMM E-Value=.) 57 2e-08
SB_30377| Best HMM Match : No HMM Matches (HMM E-Value=.) 52 9e-07
SB_53505| Best HMM Match : No HMM Matches (HMM E-Value=.) 36 0.035
SB_57810| Best HMM Match : MMR_HSR1 (HMM E-Value=3.6e-07) 34 0.19
SB_6025| Best HMM Match : MMR_HSR1 (HMM E-Value=1.1e-17) 32 0.57
SB_17698| Best HMM Match : Neuromodulin (HMM E-Value=2.8) 31 1.3
SB_6352| Best HMM Match : GTP_CDC (HMM E-Value=1.49939e-42) 31 1.7
SB_37300| Best HMM Match : MMR_HSR1 (HMM E-Value=0.061) 30 3.1
SB_23288| Best HMM Match : MMR_HSR1 (HMM E-Value=8.3e-06) 29 5.3
SB_13045| Best HMM Match : Ras (HMM E-Value=0) 29 7.0
SB_26764| Best HMM Match : ANF_receptor (HMM E-Value=0.001) 29 7.0
SB_7927| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 7.0
SB_5335| Best HMM Match : DEAD (HMM E-Value=0.34) 28 9.3
SB_46756| Best HMM Match : zf-C2H2 (HMM E-Value=4.60046e-42) 28 9.3
SB_15843| Best HMM Match : VWA (HMM E-Value=4.1e-35) 28 9.3
>SB_24089| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 693
Score = 56.8 bits (131), Expect = 2e-08
Identities = 63/199 (31%), Positives = 99/199 (49%), Gaps = 34/199 (17%)
Query: 31 MNKGLKQMQRKLKSVDCVIEVHDARIPFTGRNPIFTSTLTGA---KPHILVLNKRDLVIT 87
MNK LK +++ D ++EV DAR P R P + A K +L+LNK DLV
Sbjct: 325 MNKELK-FAGVVEAADVILEVLDARDPIGCRCPQVEQAVIAAGATKKLVLILNKIDLVPK 383
Query: 88 SLIPRIKDQLKAEQNVDNVVFTNSKDQFCRGLKTIK-PLMV---DLIKNSN--------- 134
+ + L+ E V+F S + L K P+ + D++ +S+
Sbjct: 384 DIAEKWLKYLRNE--FPAVIFKASTQTQKQNLSHSKVPVSLAGKDVLSSSSCLGAETLLK 441
Query: 135 ---RYNRSEELEYNVMI--IGVPNVGKSSMINML-RSRNISGRHVLPVGAVAGVTRSLMM 188
Y R+++++ ++ + +G PNVGKSS+IN L RSR + VGA GVT+S+
Sbjct: 442 LLGNYCRNKDIKTSITVGVVGFPNVGKSSIINSLKRSRTCT------VGATPGVTKSM-- 493
Query: 189 KMRINNDPCIFMLDTPGIL 207
+ D I +LD+PGI+
Sbjct: 494 -QEVQLDKHIKLLDSPGIV 511
>SB_30377| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 454
Score = 51.6 bits (118), Expect = 9e-07
Identities = 48/174 (27%), Positives = 90/174 (51%), Gaps = 20/174 (11%)
Query: 50 EVHDARIPFTGRNPIFTSTLTGAKPH---ILVLNKRDLVITSLIPRIKDQLKAEQNVDNV 106
+V DAR P R+ + + K H I +LNK DLV T + + L +E++
Sbjct: 79 KVLDARDPLGTRSKHIETFIKKEKSHKHLIFILNKCDLVPTWVTQQWVSVL-SEEHPTLA 137
Query: 107 VFTNSKDQFCRGLKTIKPLMVDLIKNSNRYNRSEELEYNVMIIGVPNVGKSSMINMLRSR 166
+ + F +G +++L++ ++ + S++ + +V +IG PNVGKSS+IN L+++
Sbjct: 138 FHASVTNPFGKGA------LINLLRQFSKLH-SDKKQISVGLIGYPNVGKSSIINTLKAK 190
Query: 167 NISGRHVLPVGAVAGVTRSLMMKMRINNDPCIFMLDTPGILEPS-VTNIEMGLK 219
+ V P+ V + + + R I+++D PG++ P+ T E+ LK
Sbjct: 191 KVC--KVAPIAGETKVWQYITLMRR------IYLVDCPGVVYPTGDTETEIILK 236
>SB_53505| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 342
Score = 36.3 bits (80), Expect = 0.035
Identities = 23/65 (35%), Positives = 33/65 (50%), Gaps = 5/65 (7%)
Query: 146 VMIIGVPNVGKSSMINMLRSRNISGRHVLPVGAVAGVTRSLMMKMRINNDPCIFMLDTPG 205
V IIG PN GKS++IN L G ++ V TR + + + I +LDTPG
Sbjct: 42 VAIIGEPNSGKSTLINQL-----VGEKIVAVTEKPHTTRQVSRGVFTSGGTQIILLDTPG 96
Query: 206 ILEPS 210
++ S
Sbjct: 97 LVTQS 101
>SB_57810| Best HMM Match : MMR_HSR1 (HMM E-Value=3.6e-07)
Length = 299
Score = 33.9 bits (74), Expect = 0.19
Identities = 23/69 (33%), Positives = 41/69 (59%), Gaps = 5/69 (7%)
Query: 105 NVVFTNSKDQFCRGLKTIKPLMVDLIKNSNRY---NRSEELEYNVMIIGVPNVGKSSMIN 161
+VV + +D+ GL T L +D+ +N +R + E+ + ++G PNVGKSS IN
Sbjct: 120 HVVEIDHEDEAHSGLVTSNKL-IDMCQNIHRNAVADLPEDALTTIGLVGYPNVGKSSTIN 178
Query: 162 -MLRSRNIS 169
+L+S+ ++
Sbjct: 179 TILQSKKVA 187
>SB_6025| Best HMM Match : MMR_HSR1 (HMM E-Value=1.1e-17)
Length = 98
Score = 32.3 bits (70), Expect = 0.57
Identities = 18/39 (46%), Positives = 23/39 (58%), Gaps = 5/39 (12%)
Query: 146 VMIIGVPNVGKSSMINMLRSRNISGRHVLPVGAVAGVTR 184
V ++G PNVGKS+++N I GR V V GVTR
Sbjct: 24 VAVVGRPNVGKSTLVN-----RILGRRAAVVQDVPGVTR 57
>SB_17698| Best HMM Match : Neuromodulin (HMM E-Value=2.8)
Length = 436
Score = 31.1 bits (67), Expect = 1.3
Identities = 26/105 (24%), Positives = 50/105 (47%), Gaps = 5/105 (4%)
Query: 87 TSLIPRIKDQLKAEQNVDNVVFTNSKDQFCRGLKTIKPLMVDLIKNS-NRYNR-SEELEY 144
T +IP ++ L EQ + +S D G K+I P+ + +S N Y+ E+
Sbjct: 217 TEVIPDSEELLDKEQFTEA---RDSPDYLTDGSKSITPIPREEANSSDNEYDHIHSEIMK 273
Query: 145 NVMIIGVPNVGKSSMINMLRSRNISGRHVLPVGAVAGVTRSLMMK 189
+ +P+VG +++N ++N + + A A TR+L+ +
Sbjct: 274 MTQTLSMPDVGLMNLLNNQENKNDIASELADLQAQALNTRALLQQ 318
>SB_6352| Best HMM Match : GTP_CDC (HMM E-Value=1.49939e-42)
Length = 275
Score = 30.7 bits (66), Expect = 1.7
Identities = 11/27 (40%), Positives = 19/27 (70%)
Query: 143 EYNVMIIGVPNVGKSSMINMLRSRNIS 169
E+N+M++G +GKS+M+N L +S
Sbjct: 114 EFNLMVVGASGLGKSTMVNTLFKGKLS 140
>SB_37300| Best HMM Match : MMR_HSR1 (HMM E-Value=0.061)
Length = 152
Score = 29.9 bits (64), Expect = 3.1
Identities = 12/28 (42%), Positives = 18/28 (64%)
Query: 146 VMIIGVPNVGKSSMINMLRSRNISGRHV 173
V ++G GK+++IN+L RNI HV
Sbjct: 51 VAVMGASGSGKTTLINVLAHRNIGSMHV 78
>SB_23288| Best HMM Match : MMR_HSR1 (HMM E-Value=8.3e-06)
Length = 210
Score = 29.1 bits (62), Expect = 5.3
Identities = 17/47 (36%), Positives = 28/47 (59%), Gaps = 5/47 (10%)
Query: 146 VMIIGVPNVGKSSMINMLRSRNISGRHVL----PVGAVAGVTRSLMM 188
V ++G P VGK+++IN L +N + +H+ PV V+G R L +
Sbjct: 83 VAVVGPPKVGKTTLINSL-LKNFTRQHLSDIQGPVTLVSGKKRRLTL 128
>SB_13045| Best HMM Match : Ras (HMM E-Value=0)
Length = 629
Score = 28.7 bits (61), Expect = 7.0
Identities = 18/60 (30%), Positives = 31/60 (51%), Gaps = 2/60 (3%)
Query: 133 SNRYNRSEELEYNVMIIGVPNVGKSSMINMLRSRNISGRHVLPVGAVAGVTRSLMMKMRI 192
S RY+ + L Y +++IG VGKSS+++ +G V TRS+ ++ +I
Sbjct: 3 SGRYDHYDYL-YKIVLIGDSGVGKSSLLSRFTRNEFDIESKSTIG-VEFATRSIQVEGKI 60
>SB_26764| Best HMM Match : ANF_receptor (HMM E-Value=0.001)
Length = 342
Score = 28.7 bits (61), Expect = 7.0
Identities = 15/60 (25%), Positives = 31/60 (51%), Gaps = 2/60 (3%)
Query: 101 QNVDNVVFTNSKDQFC--RGLKTIKPLMVDLIKNSNRYNRSEELEYNVMIIGVPNVGKSS 158
QN+ ++ T D+F + + + V L++N+ + + E EY+ ++ VP V + S
Sbjct: 90 QNISAILITKMSDKFSFLPWISSRLGIPVSLVQNTRSFPATLESEYHTVLSMVPEVSEQS 149
>SB_7927| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 555
Score = 28.7 bits (61), Expect = 7.0
Identities = 26/102 (25%), Positives = 46/102 (45%), Gaps = 9/102 (8%)
Query: 110 NSKDQFCRGLKTIKPLMVDLIKNSNRYNRSEELEYN---VMIIGVPNVGKSSMINMLRSR 166
N D+ C +K + L + +R ++ N +++ G PNVGKSS +N +
Sbjct: 47 NLIDKMCTIMKRQNQSLQYLEQVRQHLSRLPSIDPNTRTLLVCGFPNVGKSSFMNKVTRA 106
Query: 167 NISGRHVLPVGAVAGVTRSLMMKMRINNDPCIFMLDTPGILE 208
++ V A T+SL + ++DTPG+L+
Sbjct: 107 DVD------VQPYAFTTKSLFVGHMDYKYLRWQVVDTPGVLD 142
>SB_5335| Best HMM Match : DEAD (HMM E-Value=0.34)
Length = 211
Score = 28.3 bits (60), Expect = 9.3
Identities = 12/38 (31%), Positives = 23/38 (60%)
Query: 128 DLIKNSNRYNRSEELEYNVMIIGVPNVGKSSMINMLRS 165
D+IK+ + + + N +++GV GKS +IN +R+
Sbjct: 35 DIIKSHSEDISANKKSLNFILLGVAGTGKSCLINGIRA 72
>SB_46756| Best HMM Match : zf-C2H2 (HMM E-Value=4.60046e-42)
Length = 1078
Score = 28.3 bits (60), Expect = 9.3
Identities = 14/51 (27%), Positives = 24/51 (47%), Gaps = 1/51 (1%)
Query: 262 CDDINKVLLSGAIKYNRIRKV-RDFDGKVRDVPDLLETSRHIIKAFRTGEL 311
CD N+ + I+ V ++ +GK+R +P+L E + GEL
Sbjct: 300 CDHCNRTFYIRELLRQHIKTVVKNLEGKIRIIPELTEPQTREFRCKECGEL 350
>SB_15843| Best HMM Match : VWA (HMM E-Value=4.1e-35)
Length = 1686
Score = 28.3 bits (60), Expect = 9.3
Identities = 15/53 (28%), Positives = 27/53 (50%)
Query: 141 ELEYNVMIIGVPNVGKSSMINMLRSRNISGRHVLPVGAVAGVTRSLMMKMRIN 193
E + +M+ N+ ++ N+ S SG ++PVG GVTR ++ + N
Sbjct: 263 EKDVVIMMDKDTNIDDMTIRNIADSMEKSGLRIIPVGIDPGVTRRQLLTIATN 315
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.323 0.140 0.412
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,613,536
Number of Sequences: 59808
Number of extensions: 415339
Number of successful extensions: 841
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 8
Number of HSP's that attempted gapping in prelim test: 831
Number of HSP's gapped (non-prelim): 18
length of query: 333
length of database: 16,821,457
effective HSP length: 82
effective length of query: 251
effective length of database: 11,917,201
effective search space: 2991217451
effective search space used: 2991217451
T: 11
A: 40
X1: 16 ( 7.5 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.9 bits)
S2: 60 (28.3 bits)
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