Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA000754-TA|BGIBMGA000754-PA|IPR005289|GTP-binding,
IPR002917|GTP-binding protein, HSR1-related
(333 letters)
Database: celegans
27,539 sequences; 12,573,161 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AC091125-1|AAK27889.2| 313|Caenorhabditis elegans Hypothetical ... 201 5e-52
AL021571-5|CAI79270.1| 610|Caenorhabditis elegans Hypothetical ... 64 1e-10
AL021571-2|CAA16514.2| 592|Caenorhabditis elegans Hypothetical ... 64 1e-10
AL021571-1|CAA16512.2| 651|Caenorhabditis elegans Hypothetical ... 64 1e-10
Z49068-10|CAA88860.1| 556|Caenorhabditis elegans Hypothetical p... 62 4e-10
AF003143-4|AAO61427.1| 247|Caenorhabditis elegans Hypothetical ... 37 0.023
AF003143-3|AAL65781.1| 385|Caenorhabditis elegans Hypothetical ... 37 0.023
AF003143-2|AAK68267.2| 554|Caenorhabditis elegans Hypothetical ... 37 0.023
U00043-12|AAC77504.2| 613|Caenorhabditis elegans Hypothetical p... 34 0.16
Z70210-5|CAA94155.1| 312|Caenorhabditis elegans Hypothetical pr... 33 0.28
Z68879-1|CAA93081.1| 850|Caenorhabditis elegans Hypothetical pr... 33 0.37
U97001-5|AAB52260.3| 1592|Caenorhabditis elegans Temporarily ass... 33 0.37
Z92834-10|CAB07393.1| 439|Caenorhabditis elegans Hypothetical p... 32 0.65
Z81039-6|CAB02770.1| 812|Caenorhabditis elegans Hypothetical pr... 31 1.1
Z46241-6|CAA86319.1| 190|Caenorhabditis elegans Hypothetical pr... 30 2.0
Z48621-11|CAE17932.2| 212|Caenorhabditis elegans Hypothetical p... 30 2.6
DQ016970-1|AAY42967.1| 212|Caenorhabditis elegans Rab GTPase GL... 30 2.6
Z47808-7|CAA87771.2| 934|Caenorhabditis elegans Hypothetical pr... 29 4.6
Z29095-13|CAA82357.1| 810|Caenorhabditis elegans Hypothetical p... 29 4.6
Z22181-15|CAA80191.1| 810|Caenorhabditis elegans Hypothetical p... 29 4.6
Z22181-14|CAI46590.1| 516|Caenorhabditis elegans Hypothetical p... 29 4.6
AF326940-1|AAG49390.1| 810|Caenorhabditis elegans replication l... 29 4.6
Z68879-6|CAA93086.1| 207|Caenorhabditis elegans Hypothetical pr... 29 6.1
AF106582-7|ABD94096.1| 806|Caenorhabditis elegans Hypothetical ... 29 6.1
AF106582-6|ABD94095.1| 834|Caenorhabditis elegans Hypothetical ... 29 6.1
AF010239-1|AAB65417.1| 207|Caenorhabditis elegans glutathione S... 29 6.1
AC024812-5|AAF59556.1| 191|Caenorhabditis elegans Hypothetical ... 29 6.1
Z83217-3|CAB05682.3| 610|Caenorhabditis elegans Hypothetical pr... 28 8.1
Z66516-6|CAA91357.1| 209|Caenorhabditis elegans Hypothetical pr... 28 8.1
>AC091125-1|AAK27889.2| 313|Caenorhabditis elegans Hypothetical
protein Y67D2.4 protein.
Length = 313
Score = 201 bits (491), Expect = 5e-52
Identities = 96/232 (41%), Positives = 149/232 (64%), Gaps = 1/232 (0%)
Query: 30 HMNKGLKQMQRKLKSVDCVIEVHDARIPFTGRNPIFTSTLTGAKPHILVLNKRDLVITSL 89
HM+ LK+M+ KL+SVD +IEVHDARIP TGRN F L +PHILVLNK DL+
Sbjct: 2 HMSVQLKKMEAKLRSVDLIIEVHDARIPITGRNQQFFRHLYAIRPHILVLNKCDLIDMKK 61
Query: 90 IPRIKDQLKAEQNVDNVVFTNSKDQFCRGLKTIKPLMVDLIKNSNRYNRSEELEYNVMII 149
+ E+ V V+FT+ K + R L +K M+D ++N+ R+NR+ + EY M++
Sbjct: 62 YKHQIEDYYYERGVQKVLFTDCKKRLPRALNDVKLSMLDALENTPRFNRTVKTEYQAMVV 121
Query: 150 GVPNVGKSSMINMLRSRNIS-GRHVLPVGAVAGVTRSLMMKMRINNDPCIFMLDTPGILE 208
G+PNVGKSS+IN +R+ + R + GA GVT + ++RI + P ++++DTPG+L
Sbjct: 122 GIPNVGKSSLINAIRTHTLGIKRKAVEAGARPGVTVRVQNRVRILDKPPVYIIDTPGVLS 181
Query: 209 PSVTNIEMGLKLALCAALQDHLVGEEIIADYLLYWLNKHRKFKYVDFMGLDE 260
P+ N+E +KLA+C + + V +AD+LL+WLN+ F Y++ +G+++
Sbjct: 182 PNHRNVEDAMKLAMCDLVLESHVNLYYLADFLLFWLNRSEDFSYLELLGINQ 233
>AL021571-5|CAI79270.1| 610|Caenorhabditis elegans Hypothetical
protein T19A6.2c protein.
Length = 610
Score = 64.1 bits (149), Expect = 1e-10
Identities = 73/287 (25%), Positives = 133/287 (46%), Gaps = 35/287 (12%)
Query: 29 GHMNKGLKQMQRKLKSVDCVIEVHDARIPFTGRNPIFTSTLTGAKPH---ILVLNKRDLV 85
G N+ ++ + + S D V++V DAR P R L KPH + V+NK DLV
Sbjct: 216 GQSNRVWGELYKVIDSSDVVVQVVDARDPMGTRCRHVEEFLRKEKPHKHLVTVINKVDLV 275
Query: 86 ITSLIPRIKDQLKAEQNVDNVVFTNS-KDQFCRGLKTIKPLMVDLIKNSNRYNRSEELEY 144
T + + +L E + + F S + F +G +++L++ + + + +
Sbjct: 276 PTWVTRKWIGELSKE--MPTIAFHASINNSFGKGA------VINLLRQFAKLH-PDRPQI 326
Query: 145 NVMIIGVPNVGKSSMINMLRSRNISGRHVLPVGAVAGVTRSLMMKMRINNDPCIFMLDTP 204
+V IG PNVGKSS++N LR + + P+ V + +M+ R I+++D+P
Sbjct: 327 SVGFIGYPNVGKSSLVNTLRKKKVC--KTAPIAGETKVWQYVMLMRR------IYLIDSP 378
Query: 205 GILEPSVTNIEMGLKLALCAALQDHLVGEEIIADYLLYWLNKHRKFKYVDFMGLDEPCDD 264
G++ P + E + L +++ E + L +H + +Y G+ E D
Sbjct: 379 GVVYPQ-GDSETQIILKGVVRVENVKDPENHVQGVLDRCKPEHLRRQY----GIPE-FTD 432
Query: 265 INKVLLSGAIKYNRIRKVRDFDGKVRDVPDLLETSRHIIKAFRTGEL 311
++ L AIK R+ K D PD++ S+ ++ F+ G+L
Sbjct: 433 VDDFLTKIAIKQGRLLKGGD--------PDIVAVSKVVLNEFQRGKL 471
>AL021571-2|CAA16514.2| 592|Caenorhabditis elegans Hypothetical
protein T19A6.2b protein.
Length = 592
Score = 64.1 bits (149), Expect = 1e-10
Identities = 73/287 (25%), Positives = 133/287 (46%), Gaps = 35/287 (12%)
Query: 29 GHMNKGLKQMQRKLKSVDCVIEVHDARIPFTGRNPIFTSTLTGAKPH---ILVLNKRDLV 85
G N+ ++ + + S D V++V DAR P R L KPH + V+NK DLV
Sbjct: 157 GQSNRVWGELYKVIDSSDVVVQVVDARDPMGTRCRHVEEFLRKEKPHKHLVTVINKVDLV 216
Query: 86 ITSLIPRIKDQLKAEQNVDNVVFTNS-KDQFCRGLKTIKPLMVDLIKNSNRYNRSEELEY 144
T + + +L E + + F S + F +G +++L++ + + + +
Sbjct: 217 PTWVTRKWIGELSKE--MPTIAFHASINNSFGKGA------VINLLRQFAKLH-PDRPQI 267
Query: 145 NVMIIGVPNVGKSSMINMLRSRNISGRHVLPVGAVAGVTRSLMMKMRINNDPCIFMLDTP 204
+V IG PNVGKSS++N LR + + P+ V + +M+ R I+++D+P
Sbjct: 268 SVGFIGYPNVGKSSLVNTLRKKKVC--KTAPIAGETKVWQYVMLMRR------IYLIDSP 319
Query: 205 GILEPSVTNIEMGLKLALCAALQDHLVGEEIIADYLLYWLNKHRKFKYVDFMGLDEPCDD 264
G++ P + E + L +++ E + L +H + +Y G+ E D
Sbjct: 320 GVVYPQ-GDSETQIILKGVVRVENVKDPENHVQGVLDRCKPEHLRRQY----GIPE-FTD 373
Query: 265 INKVLLSGAIKYNRIRKVRDFDGKVRDVPDLLETSRHIIKAFRTGEL 311
++ L AIK R+ K D PD++ S+ ++ F+ G+L
Sbjct: 374 VDDFLTKIAIKQGRLLKGGD--------PDIVAVSKVVLNEFQRGKL 412
>AL021571-1|CAA16512.2| 651|Caenorhabditis elegans Hypothetical
protein T19A6.2a protein.
Length = 651
Score = 64.1 bits (149), Expect = 1e-10
Identities = 73/287 (25%), Positives = 133/287 (46%), Gaps = 35/287 (12%)
Query: 29 GHMNKGLKQMQRKLKSVDCVIEVHDARIPFTGRNPIFTSTLTGAKPH---ILVLNKRDLV 85
G N+ ++ + + S D V++V DAR P R L KPH + V+NK DLV
Sbjct: 216 GQSNRVWGELYKVIDSSDVVVQVVDARDPMGTRCRHVEEFLRKEKPHKHLVTVINKVDLV 275
Query: 86 ITSLIPRIKDQLKAEQNVDNVVFTNS-KDQFCRGLKTIKPLMVDLIKNSNRYNRSEELEY 144
T + + +L E + + F S + F +G +++L++ + + + +
Sbjct: 276 PTWVTRKWIGELSKE--MPTIAFHASINNSFGKGA------VINLLRQFAKLH-PDRPQI 326
Query: 145 NVMIIGVPNVGKSSMINMLRSRNISGRHVLPVGAVAGVTRSLMMKMRINNDPCIFMLDTP 204
+V IG PNVGKSS++N LR + + P+ V + +M+ R I+++D+P
Sbjct: 327 SVGFIGYPNVGKSSLVNTLRKKKVC--KTAPIAGETKVWQYVMLMRR------IYLIDSP 378
Query: 205 GILEPSVTNIEMGLKLALCAALQDHLVGEEIIADYLLYWLNKHRKFKYVDFMGLDEPCDD 264
G++ P + E + L +++ E + L +H + +Y G+ E D
Sbjct: 379 GVVYPQ-GDSETQIILKGVVRVENVKDPENHVQGVLDRCKPEHLRRQY----GIPE-FTD 432
Query: 265 INKVLLSGAIKYNRIRKVRDFDGKVRDVPDLLETSRHIIKAFRTGEL 311
++ L AIK R+ K D PD++ S+ ++ F+ G+L
Sbjct: 433 VDDFLTKIAIKQGRLLKGGD--------PDIVAVSKVVLNEFQRGKL 471
>Z49068-10|CAA88860.1| 556|Caenorhabditis elegans Hypothetical
protein K01C8.9 protein.
Length = 556
Score = 62.5 bits (145), Expect = 4e-10
Identities = 55/204 (26%), Positives = 101/204 (49%), Gaps = 28/204 (13%)
Query: 37 QMQRKLKSVDCVIEVHDARIPFTGRNP-IFTSTLTGAKPHILVLNKRDLV---------- 85
++++ ++ D +I+V DAR P R+ + L G K +L+LNK DLV
Sbjct: 140 EVRKTVEIADVIIQVLDARDPLGSRSKSVEDQVLKGGKRLVLLLNKIDLVPRENVQKWLE 199
Query: 86 -ITSLIPRIKDQLKAEQNVDNVVFTNSKDQFCRGLKTIKPLMVDLI-KNSNRYNRSEELE 143
+ P I + ++ N+ NS +T K + D++ K Y R+++++
Sbjct: 200 YLRGQFPTIAFKASTQEQKSNIGRFNSA--ILNNTETSKCVGADIVMKILANYCRNKDIK 257
Query: 144 YNVMI--IGVPNVGKSSMINMLRSRNISGRHVLPVGAVAGVTRSLMMKMRINNDPCIFML 201
++ + +G PNVGKSS+IN L+ R VG + G+T+ + + D I ++
Sbjct: 258 TSIRVGVVGFPNVGKSSVINSLKRRKACN-----VGNLPGITKEI---QEVELDKNIRLI 309
Query: 202 DTPGIL---EPSVTNIEMGLKLAL 222
D+PG++ + + IE+ LK A+
Sbjct: 310 DSPGVILVSQKDLDPIEVALKNAI 333
>AF003143-4|AAO61427.1| 247|Caenorhabditis elegans Hypothetical
protein C53H9.2c protein.
Length = 247
Score = 36.7 bits (81), Expect = 0.023
Identities = 47/194 (24%), Positives = 82/194 (42%), Gaps = 27/194 (13%)
Query: 36 KQMQRKLKSVDCVIEVHDARIPFTGRNPI---FTSTLTGAKPHILVLNKRDLVITSLIPR 92
+++ R ++ D ++++ DAR P R+ + + AK +L++NK DL+
Sbjct: 3 RELWRVVEKSDIIVQIVDARNPLLFRSKDLDDYVKEVDPAKQILLLVNKADLLKPEQQAS 62
Query: 93 IKDQLKAEQ-------NVDNV--------VFTNSKDQFCRGLKTIKPLMVDLIKNSNRYN 137
++ + E +D V V T++ T K ++ K +
Sbjct: 63 WREYFEKENIKVIFWSAIDEVLDPIDEDAVETSNPSTSTHMFVTNKDELIAKFKELGHVS 122
Query: 138 RSEELE-YNVMIIGVPNVGKSSMINMLRSRNISGRHVLPVGAVAGVTRSLMMKMRINNDP 196
+ V ++G PNVGKSS IN L +G + V A G TR I+ D
Sbjct: 123 DEPSAKPVMVGMVGYPNVGKSSTINKL-----AGGKKVSVSATPGKTRHF---QTIHIDS 174
Query: 197 CIFMLDTPGILEPS 210
+ + D PG++ PS
Sbjct: 175 QLCLCDCPGLVMPS 188
>AF003143-3|AAL65781.1| 385|Caenorhabditis elegans Hypothetical
protein C53H9.2b protein.
Length = 385
Score = 36.7 bits (81), Expect = 0.023
Identities = 47/194 (24%), Positives = 82/194 (42%), Gaps = 27/194 (13%)
Query: 36 KQMQRKLKSVDCVIEVHDARIPFTGRNPI---FTSTLTGAKPHILVLNKRDLVITSLIPR 92
+++ R ++ D ++++ DAR P R+ + + AK +L++NK DL+
Sbjct: 3 RELWRVVEKSDIIVQIVDARNPLLFRSKDLDDYVKEVDPAKQILLLVNKADLLKPEQQAS 62
Query: 93 IKDQLKAEQ-------NVDNV--------VFTNSKDQFCRGLKTIKPLMVDLIKNSNRYN 137
++ + E +D V V T++ T K ++ K +
Sbjct: 63 WREYFEKENIKVIFWSAIDEVLDPIDEDAVETSNPSTSTHMFVTNKDELIAKFKELGHVS 122
Query: 138 RSEELE-YNVMIIGVPNVGKSSMINMLRSRNISGRHVLPVGAVAGVTRSLMMKMRINNDP 196
+ V ++G PNVGKSS IN L +G + V A G TR I+ D
Sbjct: 123 DEPSAKPVMVGMVGYPNVGKSSTINKL-----AGGKKVSVSATPGKTRHF---QTIHIDS 174
Query: 197 CIFMLDTPGILEPS 210
+ + D PG++ PS
Sbjct: 175 QLCLCDCPGLVMPS 188
>AF003143-2|AAK68267.2| 554|Caenorhabditis elegans Hypothetical
protein C53H9.2a protein.
Length = 554
Score = 36.7 bits (81), Expect = 0.023
Identities = 47/194 (24%), Positives = 82/194 (42%), Gaps = 27/194 (13%)
Query: 36 KQMQRKLKSVDCVIEVHDARIPFTGRNPI---FTSTLTGAKPHILVLNKRDLVITSLIPR 92
+++ R ++ D ++++ DAR P R+ + + AK +L++NK DL+
Sbjct: 172 RELWRVVEKSDIIVQIVDARNPLLFRSKDLDDYVKEVDPAKQILLLVNKADLLKPEQQAS 231
Query: 93 IKDQLKAEQ-------NVDNV--------VFTNSKDQFCRGLKTIKPLMVDLIKNSNRYN 137
++ + E +D V V T++ T K ++ K +
Sbjct: 232 WREYFEKENIKVIFWSAIDEVLDPIDEDAVETSNPSTSTHMFVTNKDELIAKFKELGHVS 291
Query: 138 RSEELE-YNVMIIGVPNVGKSSMINMLRSRNISGRHVLPVGAVAGVTRSLMMKMRINNDP 196
+ V ++G PNVGKSS IN L +G + V A G TR I+ D
Sbjct: 292 DEPSAKPVMVGMVGYPNVGKSSTINKL-----AGGKKVSVSATPGKTRHF---QTIHIDS 343
Query: 197 CIFMLDTPGILEPS 210
+ + D PG++ PS
Sbjct: 344 QLCLCDCPGLVMPS 357
>U00043-12|AAC77504.2| 613|Caenorhabditis elegans Hypothetical
protein T26A5.1 protein.
Length = 613
Score = 33.9 bits (74), Expect = 0.16
Identities = 16/42 (38%), Positives = 27/42 (64%), Gaps = 3/42 (7%)
Query: 129 LIKNSNRYNRSEELEYNVMIIGVPNVGKSSMINMLRSRNISG 170
L+KN + Y +S EL + ++G GK++++NML RN+ G
Sbjct: 50 LLKNVSGYAKSGEL---LALMGASGAGKTTLLNMLMCRNLKG 88
>Z70210-5|CAA94155.1| 312|Caenorhabditis elegans Hypothetical
protein K08H2.5 protein.
Length = 312
Score = 33.1 bits (72), Expect = 0.28
Identities = 22/67 (32%), Positives = 32/67 (47%), Gaps = 3/67 (4%)
Query: 142 LEYNVMIIGVPNVGKSSMINMLRSRNISGRHVLPVGAVAGVTRSLMMKMRINNDPCIFML 201
+ +NVM+ GVPN+ M ISG L +G+V+ V KM DP F+
Sbjct: 203 VSWNVMMGGVPNLKDDFSSLMFLGLKISGISSLEIGSVSEVRH---QKMIFELDPSRFLR 259
Query: 202 DTPGILE 208
P +L+
Sbjct: 260 SVPWLLK 266
>Z68879-1|CAA93081.1| 850|Caenorhabditis elegans Hypothetical
protein K08F4.1 protein.
Length = 850
Score = 32.7 bits (71), Expect = 0.37
Identities = 34/131 (25%), Positives = 62/131 (47%), Gaps = 7/131 (5%)
Query: 34 GLKQMQRKLKSVDCVIEVHDARI-PFTGRNPIFT-STLTGAKPHILVLNKRDLVITSLIP 91
G + +R+L V+ V + + R P + T S+ K + + +R L SL
Sbjct: 52 GYGKRKRRLNEVEDVFDQYGRRSHPMDWHMRMETVSSEVLQKSQVNAVKRRAL--ESLEQ 109
Query: 92 RIKDQL-KAEQNVDNVVFTNSKDQFCRGLKTIKPLMVDLIKNSNRYNRSEELEYNVMIIG 150
+I + +AE+ ++ +N+ D F G +TI L ++ RY R +E+ N + G
Sbjct: 110 KINEAAAQAERKMNENHHSNAFDDFQSGEQTISSLCE--LEMERRYRRRQEIMRNPVTDG 167
Query: 151 VPNVGKSSMIN 161
P +G S ++N
Sbjct: 168 SPWIGISDVVN 178
>U97001-5|AAB52260.3| 1592|Caenorhabditis elegans Temporarily
assigned gene nameprotein 59 protein.
Length = 1592
Score = 32.7 bits (71), Expect = 0.37
Identities = 20/66 (30%), Positives = 33/66 (50%), Gaps = 2/66 (3%)
Query: 37 QMQRKLKSVDCVIEVHDARIPFTGRNPIFTSTLTGAKPHILVLNKR--DLVITSLIPRIK 94
++ +KLK +I H A P + + + ST+ K I +LNKR D + + K
Sbjct: 463 ELVQKLKEAQTIIAQHVAENPRSEEDRNYESTIAQLKDEIQILNKRLEDEALAQQQQKPK 522
Query: 95 DQLKAE 100
D++ AE
Sbjct: 523 DEIVAE 528
>Z92834-10|CAB07393.1| 439|Caenorhabditis elegans Hypothetical
protein F39B2.7 protein.
Length = 439
Score = 31.9 bits (69), Expect = 0.65
Identities = 23/72 (31%), Positives = 40/72 (55%), Gaps = 7/72 (9%)
Query: 145 NVMIIGVPNVGKSSMINMLRSRNISGRHVLPVGAVAGVTR-SLMMKMRINNDPCIFMLDT 203
++++ G PN GKSS++N L +++ V ++ G TR SL ++IN C + DT
Sbjct: 212 DIVLYGRPNSGKSSILNQLAHDDVA-----IVSSIPGTTRDSLETIIQINGVRC-RLTDT 265
Query: 204 PGILEPSVTNIE 215
G+ + + IE
Sbjct: 266 AGVRQKTNDVIE 277
>Z81039-6|CAB02770.1| 812|Caenorhabditis elegans Hypothetical
protein C25D7.6 protein.
Length = 812
Score = 31.1 bits (67), Expect = 1.1
Identities = 33/120 (27%), Positives = 57/120 (47%), Gaps = 13/120 (10%)
Query: 75 HILVLNKRDLVITSLIPR-IKD--QLKAEQNVDNVVFTNSKDQFCRGLKTIKPLMVDLIK 131
HI +L+K VI + P+ +KD ++ +N ++ + C +T K L+ L+
Sbjct: 269 HIQMLSKE--VIPNFEPQDVKDVRKISKSRNPFELLARSLAPSICGHEETKKALLCLLLG 326
Query: 132 NSNRY-NRSEEL--EYNVMIIGVPNVGKSSMINML-----RSRNISGRHVLPVGAVAGVT 183
+ N L + NV++IG P+V KS ++ + R+ +GR VG A VT
Sbjct: 327 GMEKILNNGSRLRGDINVLLIGDPSVAKSQLLRYVLRMAPRAITTTGRGSSGVGLTAAVT 386
>Z46241-6|CAA86319.1| 190|Caenorhabditis elegans Hypothetical
protein C38D4.8 protein.
Length = 190
Score = 30.3 bits (65), Expect = 2.0
Identities = 11/38 (28%), Positives = 26/38 (68%), Gaps = 1/38 (2%)
Query: 143 EYNVMIIGVPNVGKSSMINMLRSRNISGRHVLP-VGAV 179
+ N++++G+ N GK++++N L++ + ++P VG V
Sbjct: 17 DVNIVVVGLDNSGKTTILNQLKTPETRSQQIVPTVGHV 54
>Z48621-11|CAE17932.2| 212|Caenorhabditis elegans Hypothetical
protein R07B1.12 protein.
Length = 212
Score = 29.9 bits (64), Expect = 2.6
Identities = 12/39 (30%), Positives = 22/39 (56%)
Query: 139 SEELEYNVMIIGVPNVGKSSMINMLRSRNISGRHVLPVG 177
++++ Y V++IG P VGK+S+I S + +G
Sbjct: 7 NDKISYKVLVIGDPGVGKTSIIRRFVHNVFSSNYKTTIG 45
>DQ016970-1|AAY42967.1| 212|Caenorhabditis elegans Rab GTPase GLO-1
protein.
Length = 212
Score = 29.9 bits (64), Expect = 2.6
Identities = 12/39 (30%), Positives = 22/39 (56%)
Query: 139 SEELEYNVMIIGVPNVGKSSMINMLRSRNISGRHVLPVG 177
++++ Y V++IG P VGK+S+I S + +G
Sbjct: 7 NDKISYKVLVIGDPGVGKTSIIRRFVHNVFSSNYKTTIG 45
>Z47808-7|CAA87771.2| 934|Caenorhabditis elegans Hypothetical
protein D2013.5 protein.
Length = 934
Score = 29.1 bits (62), Expect = 4.6
Identities = 27/108 (25%), Positives = 47/108 (43%), Gaps = 9/108 (8%)
Query: 72 AKPHILVLNKRDLVITSLIPRIKDQLKAEQNVDNVVFTNSKDQFCRGLKTIKPLMVDLIK 131
A+ I L + L S R ++L+ E V S D+ LK +K ++D+
Sbjct: 209 AEERIQKLQEEMLKTQSQYQRELERLEKENKVLKQRLLLSDDKAAIRLKRLKRSLIDMYS 268
Query: 132 N--------SNRYNRSEELEYNVMIIGVPNVGKSSMINMLRSRNISGR 171
+ YN S+ L V+++G + GK+S++ M+ I R
Sbjct: 269 EVLDLLNEYDSSYNTSDNLP-RVVVVGDQSAGKTSVLEMVAQARIFPR 315
>Z29095-13|CAA82357.1| 810|Caenorhabditis elegans Hypothetical
protein ZK632.1a protein.
Length = 810
Score = 29.1 bits (62), Expect = 4.6
Identities = 23/100 (23%), Positives = 43/100 (43%), Gaps = 5/100 (5%)
Query: 90 IPRIKDQLKAEQNVDNVVFTNSKDQFCRGLKTIKPLMVDLIKNSNRYNRSEELEYNVMII 149
+ ++ D K E+N+ + +F N L + L+ + K S S + NV ++
Sbjct: 337 LKKMSDDKKIEKNIVDSLFPNIYGNHEVKLGVLLMLLGGVAKKSRDEGTSLRGDINVCLV 396
Query: 150 GVPNVGKSSMINML-----RSRNISGRHVLPVGAVAGVTR 184
G P+ KS ++ + R+ SG+ G A V +
Sbjct: 397 GDPSTAKSQVLKAVEEFSPRAIYTSGKASSAAGLTAAVVK 436
>Z22181-15|CAA80191.1| 810|Caenorhabditis elegans Hypothetical
protein ZK632.1a protein.
Length = 810
Score = 29.1 bits (62), Expect = 4.6
Identities = 23/100 (23%), Positives = 43/100 (43%), Gaps = 5/100 (5%)
Query: 90 IPRIKDQLKAEQNVDNVVFTNSKDQFCRGLKTIKPLMVDLIKNSNRYNRSEELEYNVMII 149
+ ++ D K E+N+ + +F N L + L+ + K S S + NV ++
Sbjct: 337 LKKMSDDKKIEKNIVDSLFPNIYGNHEVKLGVLLMLLGGVAKKSRDEGTSLRGDINVCLV 396
Query: 150 GVPNVGKSSMINML-----RSRNISGRHVLPVGAVAGVTR 184
G P+ KS ++ + R+ SG+ G A V +
Sbjct: 397 GDPSTAKSQVLKAVEEFSPRAIYTSGKASSAAGLTAAVVK 436
>Z22181-14|CAI46590.1| 516|Caenorhabditis elegans Hypothetical
protein ZK632.1b protein.
Length = 516
Score = 29.1 bits (62), Expect = 4.6
Identities = 23/100 (23%), Positives = 43/100 (43%), Gaps = 5/100 (5%)
Query: 90 IPRIKDQLKAEQNVDNVVFTNSKDQFCRGLKTIKPLMVDLIKNSNRYNRSEELEYNVMII 149
+ ++ D K E+N+ + +F N L + L+ + K S S + NV ++
Sbjct: 43 LKKMSDDKKIEKNIVDSLFPNIYGNHEVKLGVLLMLLGGVAKKSRDEGTSLRGDINVCLV 102
Query: 150 GVPNVGKSSMINML-----RSRNISGRHVLPVGAVAGVTR 184
G P+ KS ++ + R+ SG+ G A V +
Sbjct: 103 GDPSTAKSQVLKAVEEFSPRAIYTSGKASSAAGLTAAVVK 142
>AF326940-1|AAG49390.1| 810|Caenorhabditis elegans replication
licensing factor MCM2/3/5-type protein protein.
Length = 810
Score = 29.1 bits (62), Expect = 4.6
Identities = 23/100 (23%), Positives = 43/100 (43%), Gaps = 5/100 (5%)
Query: 90 IPRIKDQLKAEQNVDNVVFTNSKDQFCRGLKTIKPLMVDLIKNSNRYNRSEELEYNVMII 149
+ ++ D K E+N+ + +F N L + L+ + K S S + NV ++
Sbjct: 337 LKKMSDDKKIEKNIVDSLFPNIYGNHEVKLGVLLMLLGGVAKKSRDEGTSLRGDINVCLV 396
Query: 150 GVPNVGKSSMINML-----RSRNISGRHVLPVGAVAGVTR 184
G P+ KS ++ + R+ SG+ G A V +
Sbjct: 397 GDPSTAKSQVLKAVEEFSPRAIYTSGKASSAAGLTAAVVK 436
>Z68879-6|CAA93086.1| 207|Caenorhabditis elegans Hypothetical
protein K08F4.7 protein.
Length = 207
Score = 28.7 bits (61), Expect = 6.1
Identities = 8/33 (24%), Positives = 22/33 (66%)
Query: 263 DDINKVLLSGAIKYNRIRKVRDFDGKVRDVPDL 295
D++ +L +G + +N+ +K+ +F K+ +P++
Sbjct: 163 DNLTSLLKNGFLDFNKEKKLEEFYNKIHSIPEI 195
>AF106582-7|ABD94096.1| 806|Caenorhabditis elegans Hypothetical
protein W05F2.4b protein.
Length = 806
Score = 28.7 bits (61), Expect = 6.1
Identities = 22/74 (29%), Positives = 33/74 (44%), Gaps = 6/74 (8%)
Query: 127 VDLIKNSNRYNRSEELEYNVMIIGVPNVGKSSMINMLRS--RNISGRHVLPVGAVAGVTR 184
+ + + RY+R ELE + +P +S N + S R I G P G+ A
Sbjct: 681 IGIYNDDRRYSRGSELETSASFRQLPPASNTSKHNRIGSFLRKIGGGSSRPPGSAA---- 736
Query: 185 SLMMKMRINNDPCI 198
SLM +I N+ I
Sbjct: 737 SLMSLNKIANETII 750
>AF106582-6|ABD94095.1| 834|Caenorhabditis elegans Hypothetical
protein W05F2.4a protein.
Length = 834
Score = 28.7 bits (61), Expect = 6.1
Identities = 22/74 (29%), Positives = 33/74 (44%), Gaps = 6/74 (8%)
Query: 127 VDLIKNSNRYNRSEELEYNVMIIGVPNVGKSSMINMLRS--RNISGRHVLPVGAVAGVTR 184
+ + + RY+R ELE + +P +S N + S R I G P G+ A
Sbjct: 709 IGIYNDDRRYSRGSELETSASFRQLPPASNTSKHNRIGSFLRKIGGGSSRPPGSAA---- 764
Query: 185 SLMMKMRINNDPCI 198
SLM +I N+ I
Sbjct: 765 SLMSLNKIANETII 778
>AF010239-1|AAB65417.1| 207|Caenorhabditis elegans glutathione
S-transferase protein.
Length = 207
Score = 28.7 bits (61), Expect = 6.1
Identities = 8/33 (24%), Positives = 22/33 (66%)
Query: 263 DDINKVLLSGAIKYNRIRKVRDFDGKVRDVPDL 295
D++ +L +G + +N+ +K+ +F K+ +P++
Sbjct: 163 DNLTSLLKNGFLDFNKEKKLEEFYNKIHSIPEI 195
>AC024812-5|AAF59556.1| 191|Caenorhabditis elegans Hypothetical
protein Y54E10BR.2 protein.
Length = 191
Score = 28.7 bits (61), Expect = 6.1
Identities = 15/63 (23%), Positives = 28/63 (44%), Gaps = 1/63 (1%)
Query: 143 EYNVMIIGVPNVGKSSMINMLRSRNISGRHVLPVGAVAGVTRSLMMKMRINNDPCIFMLD 202
+Y V+I+G+ N GK++ + +S + VL + + +NN C+ D
Sbjct: 17 DYYVVIVGLDNAGKTTFLEQTKSHFVKDYGVLNPSKITATVGLNTGNVELNN-TCLHFWD 75
Query: 203 TPG 205
G
Sbjct: 76 LGG 78
>Z83217-3|CAB05682.3| 610|Caenorhabditis elegans Hypothetical
protein C10C6.5 protein.
Length = 610
Score = 28.3 bits (60), Expect = 8.1
Identities = 10/23 (43%), Positives = 17/23 (73%)
Query: 148 IIGVPNVGKSSMINMLRSRNISG 170
++G GK++++NML SRN+ G
Sbjct: 66 LMGASGAGKTTLLNMLLSRNLRG 88
>Z66516-6|CAA91357.1| 209|Caenorhabditis elegans Hypothetical
protein W03C9.3 protein.
Length = 209
Score = 28.3 bits (60), Expect = 8.1
Identities = 12/33 (36%), Positives = 21/33 (63%)
Query: 146 VMIIGVPNVGKSSMINMLRSRNISGRHVLPVGA 178
V+I+G VGK+S++N +R S ++ +GA
Sbjct: 12 VIILGDSGVGKTSLMNQYVNRRFSNQYKATIGA 44
Database: celegans
Posted date: Oct 5, 2007 11:13 AM
Number of letters in database: 12,573,161
Number of sequences in database: 27,539
Lambda K H
0.323 0.140 0.412
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,876,403
Number of Sequences: 27539
Number of extensions: 325009
Number of successful extensions: 767
Number of sequences better than 10.0: 29
Number of HSP's better than 10.0 without gapping: 18
Number of HSP's successfully gapped in prelim test: 11
Number of HSP's that attempted gapping in prelim test: 738
Number of HSP's gapped (non-prelim): 34
length of query: 333
length of database: 12,573,161
effective HSP length: 82
effective length of query: 251
effective length of database: 10,314,963
effective search space: 2589055713
effective search space used: 2589055713
T: 11
A: 40
X1: 16 ( 7.5 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.9 bits)
S2: 60 (28.3 bits)
- SilkBase 1999-2023 -