Silkworm BLAST Result against tribolium

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000753-TA|BGIBMGA000753-PA|IPR008616|Fibronectin-binding
A, N-terminal, IPR008532|Protein of unknown function DUF814
         (992 letters)

Database: tribolium 
           317 sequences; 114,650 total letters

Searching....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY295879-1|AAQ62692.1| 1464|Tribolium castaneum chitin synthase ...    29   0.21 
AY291477-1|AAQ55061.1| 1464|Tribolium castaneum chitin synthase ...    29   0.21 
DQ659254-1|ABG47452.1|  431|Tribolium castaneum imaginal disc gr...    24   5.9  
AF356647-1|AAK43700.1| 1156|Tribolium castaneum teashirt-like pr...    24   5.9  

>AY295879-1|AAQ62692.1| 1464|Tribolium castaneum chitin synthase
            protein.
          Length = 1464

 Score = 28.7 bits (61), Expect = 0.21
 Identities = 13/32 (40%), Positives = 19/32 (59%)

Query: 317  EREALKKLQNVRRDHERRVTELERAQTRDKRA 348
            E E L+K+Q   RD  R++  LE+ Q  D R+
Sbjct: 1098 ENEQLRKIQESLRDLNRKIESLEKMQYPDLRS 1129


>AY291477-1|AAQ55061.1| 1464|Tribolium castaneum chitin synthase CHS2
            protein.
          Length = 1464

 Score = 28.7 bits (61), Expect = 0.21
 Identities = 13/32 (40%), Positives = 19/32 (59%)

Query: 317  EREALKKLQNVRRDHERRVTELERAQTRDKRA 348
            E E L+K+Q   RD  R++  LE+ Q  D R+
Sbjct: 1098 ENEQLRKIQESLRDLNRKIESLEKMQYPDLRS 1129


>DQ659254-1|ABG47452.1|  431|Tribolium castaneum imaginal disc
           growth factor 4 protein.
          Length = 431

 Score = 23.8 bits (49), Expect = 5.9
 Identities = 10/22 (45%), Positives = 16/22 (72%)

Query: 319 EALKKLQNVRRDHERRVTELER 340
           + L +L +V RD+ R +TEL+R
Sbjct: 68  QPLNELFDVTRDNYRHITELKR 89


>AF356647-1|AAK43700.1| 1156|Tribolium castaneum teashirt-like
           protein protein.
          Length = 1156

 Score = 23.8 bits (49), Expect = 5.9
 Identities = 9/16 (56%), Positives = 13/16 (81%)

Query: 792 KIKEKYKDQDEDERLY 807
           KIK + +D+DEDER +
Sbjct: 883 KIKREAEDRDEDERSF 898


  Database: tribolium
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 114,650
  Number of sequences in database:  317
  
Lambda     K      H
   0.315    0.132    0.379 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 209,524
Number of Sequences: 317
Number of extensions: 8718
Number of successful extensions: 12
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 8
Number of HSP's gapped (non-prelim): 4
length of query: 992
length of database: 114,650
effective HSP length: 64
effective length of query: 928
effective length of database: 94,362
effective search space: 87567936
effective search space used: 87567936
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)
S2: 48 (23.4 bits)