GeneModel BLAST Result against mosquito

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000753-TA|BGIBMGA000753-PA|IPR008616|Fibronectin-binding
A, N-terminal, IPR008532|Protein of unknown function DUF814
         (992 letters)

Database: mosquito 
           2123 sequences; 516,269 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AJ535206-1|CAD59406.1| 1376|Anopheles gambiae SMC4 protein protein.    31   0.20 
DQ137801-1|AAZ78362.1|  622|Anopheles gambiae male-specific doub...    29   0.79 
AJ535205-1|CAD59405.1| 1201|Anopheles gambiae SMC3 protein protein.    27   3.2  
AJ438610-1|CAD27473.1|  838|Anopheles gambiae putative microtubu...    26   5.6  
M93689-1|AAA29368.1|  442|Anopheles gambiae protein ( Anopheles ...    25   7.4  

>AJ535206-1|CAD59406.1| 1376|Anopheles gambiae SMC4 protein protein.
          Length = 1376

 Score = 30.7 bits (66), Expect = 0.20
 Identities = 37/167 (22%), Positives = 75/167 (44%), Gaps = 10/167 (5%)

Query: 298 DEFFSASEGQKIDMKTVQLEREALKKLQNVRRDHERRVTELERAQTRDKRAAEL-IASNE 356
           DE  SA E ++  +K   L++ A K   N+R  +ERR   LE+    +KR  EL     +
Sbjct: 365 DELVSAKESKESTLKN-SLDKFA-KVQANMRATNERRKKTLEQIAAEEKRLLELQDVPKK 422

Query: 357 PLLSWDDIQLLVKTAQENKDPVASCIKHLKLNTNHITLLLSDPYLHDEKP--EPMMIDID 414
                ++ +  +++    K  V +     KL  N  TL      L +EK   +  +I++ 
Sbjct: 423 NKKEIEESEAKIESLTRQKTEVEA-----KLTANLATLKDETKVLLEEKEKLQTELIELK 477

Query: 415 LSLTAFANARRYYDQKRNAAKKQQKTIESSGKALKSAEKKTKQTLKE 461
            ++    +A    + +    +  + T     ++L+ + ++T++ L+E
Sbjct: 478 RAVDESKSALSIAESELKICQHDEVTERRKLESLRYSYEETEKDLEE 524


>DQ137801-1|AAZ78362.1|  622|Anopheles gambiae male-specific
           doublesex protein protein.
          Length = 622

 Score = 28.7 bits (61), Expect = 0.79
 Identities = 25/98 (25%), Positives = 44/98 (44%), Gaps = 4/98 (4%)

Query: 622 QPLGADEEPPAAPGDDAEDQEIAVSDDEICMYSRLMISWLGADEPSDKEDTKAAEGKLET 681
           Q + +   P  +PG D E+  +  S  E    S++  S++ A EP D   T     + E 
Sbjct: 364 QTVESTNAPSRSPGPD-EEPSVYKSLAEAA--SKMARSFIPAREPEDLHTTTHKSPERED 420

Query: 682 IAEEPRAADPPDVRASETAIQNERDGDTESDSGDDLPD 719
              +P  A    VR S+ +  + +D +  ++S +D  D
Sbjct: 421 NPSQPYEAYLESVRRSKKSFPH-KDAEGVTESAEDCYD 457


>AJ535205-1|CAD59405.1| 1201|Anopheles gambiae SMC3 protein protein.
          Length = 1201

 Score = 26.6 bits (56), Expect = 3.2
 Identities = 12/34 (35%), Positives = 22/34 (64%)

Query: 428 DQKRNAAKKQQKTIESSGKALKSAEKKTKQTLKE 461
           D+K + A KQQKT++   ++    EK+ ++ L+E
Sbjct: 884 DRKLSEALKQQKTLQKELESWIQKEKEAQEKLEE 917


>AJ438610-1|CAD27473.1|  838|Anopheles gambiae putative microtubule
           binding protein protein.
          Length = 838

 Score = 25.8 bits (54), Expect = 5.6
 Identities = 9/28 (32%), Positives = 17/28 (60%)

Query: 161 AAPPIEDLKDILLRSKPGDNLKKILNPN 188
           A P ++D +D+++   P DN   + +PN
Sbjct: 349 ATPSVDDDEDVVIGRLPADNSSALNSPN 376


>M93689-1|AAA29368.1|  442|Anopheles gambiae protein ( Anopheles
           gambiae T1 retroposon. ).
          Length = 442

 Score = 25.4 bits (53), Expect = 7.4
 Identities = 10/39 (25%), Positives = 18/39 (46%)

Query: 116 YDRGNIILTDSEWIILNVLRPHVEGDKIRFAVKEKYPLD 154
           +D  N  + +  W+    ++ HV  D +R  +K   P D
Sbjct: 243 HDTTNTGIAEKVWLYFTNIKSHVSADDMRVWLKAVLPTD 281


  Database: mosquito
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 516,269
  Number of sequences in database:  2123
  
Lambda     K      H
   0.315    0.132    0.379 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 936,391
Number of Sequences: 2123
Number of extensions: 37213
Number of successful extensions: 70
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 67
Number of HSP's gapped (non-prelim): 5
length of query: 992
length of database: 516,269
effective HSP length: 71
effective length of query: 921
effective length of database: 365,536
effective search space: 336658656
effective search space used: 336658656
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)
S2: 52 (25.0 bits)