Silkworm BLAST Result against nematostella

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000752-TA|BGIBMGA000752-PA|IPR008949|Terpenoid synthase
         (377 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_37931| Best HMM Match : No HMM Matches (HMM E-Value=.)             141   1e-33
SB_38122| Best HMM Match : No HMM Matches (HMM E-Value=.)              52   1e-06
SB_7589| Best HMM Match : Ras (HMM E-Value=0)                          31   1.2  
SB_20023| Best HMM Match : 7tm_1 (HMM E-Value=3.4e-25)                 30   3.6  
SB_48078| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   3.6  
SB_51785| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   4.7  
SB_53261| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   6.2  
SB_32170| Best HMM Match : Involucrin2 (HMM E-Value=5)                 29   6.2  
SB_217| Best HMM Match : No HMM Matches (HMM E-Value=.)                29   6.2  
SB_26490| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   8.2  
SB_24420| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   8.2  

>SB_37931| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 361

 Score =  141 bits (341), Expect = 1e-33
 Identities = 73/184 (39%), Positives = 118/184 (64%), Gaps = 8/184 (4%)

Query: 19  SKLIREAEKIVGYPTSFMNLRWLLSDEFANLAMHLRKVVGSNHPIVKTAKNFLYNEHNNL 78
           +K + +AEK+VGYPTSF++LR LLSDE +N+AM+++++VGS HP+VKTA+ F+Y+   ++
Sbjct: 56  TKALSDAEKLVGYPTSFLSLRCLLSDELSNIAMYMKRLVGSRHPLVKTARGFVYDGQYSM 115

Query: 79  QPWGLIILLLSKAVSP----ETSSLQNSALA---QDQRILAELTEMIRTGHYVHRGLLNI 131
           Q  GL++LL++KA +P       S+++ A++     QR +AE+TEMI T + +H G++++
Sbjct: 116 QTRGLLVLLVAKAAAPCLPSNKVSMEHEAVSGIFPGQRQIAEITEMIHTAYLIHNGVVDL 175

Query: 132 APDDRDSSMATSMFANKIAILIGDYLLVTANGMLARLKNQDLSYLISTALRDLSEGEFFG 191
           A            F NK+++L GD+LL  A   LA L +  +  +IST +  L EG    
Sbjct: 176 AAVP-TKEFKDMEFGNKMSVLTGDFLLANACTGLAALNDTQVVAMISTVISHLMEGRVMS 234

Query: 192 ERDN 195
              N
Sbjct: 235 SEYN 238



 Score = 37.5 bits (83), Expect = 0.018
 Identities = 23/65 (35%), Positives = 34/65 (52%), Gaps = 1/65 (1%)

Query: 244 TLLGRGCQGALLLSGKGEKEQEIAYKFGCYLCLAWQASAEIQKITSDNKEHYSLVSAPVL 303
           +LL   CQ AL L     + QE AY+FG  +  A     E++ + S N+   +L SA V+
Sbjct: 255 SLLANSCQAALKLLSHSTELQEKAYEFGKNIAFAQHLKDELENLQS-NQPAMTLNSASVI 313

Query: 304 FALHE 308
            +L E
Sbjct: 314 LSLAE 318


>SB_38122| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 273

 Score = 51.6 bits (118), Expect = 1e-06
 Identities = 33/108 (30%), Positives = 53/108 (49%), Gaps = 3/108 (2%)

Query: 90  KAVSPETSSLQNSALAQDQRILAELTEMIRTGHYVHRGLLNIAPDDRDSSMATSMFANKI 149
           K V P  S+ +   L  DQ   A ++EMI T   +H  +++ A   R       M+ +K 
Sbjct: 68  KRVFPSRSASRRVIL-HDQETAAMISEMIHTASLIHDDVIDRADTRRGKVAINLMYGDKN 126

Query: 150 AILIGDYLLVTANGMLARLKNQDLSYLISTALRDLSEGEF--FGERDN 195
            IL GDY+L   +  +AR  N +   L++  + +L  GEF   G ++N
Sbjct: 127 CILAGDYILSRVSLAIARFGNVEAVKLLAEIVDELVRGEFMQLGSKEN 174


>SB_7589| Best HMM Match : Ras (HMM E-Value=0)
          Length = 640

 Score = 31.5 bits (68), Expect = 1.2
 Identities = 17/48 (35%), Positives = 24/48 (50%)

Query: 206 PFETGEFDICSDTTPLKVNNILGEPIREWTLRTMFNGGTLLGRGCQGA 253
           P  +  F    D +P K N+IL +P R  +L T+  G    GRG + A
Sbjct: 130 PAGSDGFKRADDNSPFKRNSILRKPCRHRSLETLDEGDGPTGRGNRSA 177


>SB_20023| Best HMM Match : 7tm_1 (HMM E-Value=3.4e-25)
          Length = 548

 Score = 29.9 bits (64), Expect = 3.6
 Identities = 17/77 (22%), Positives = 38/77 (49%)

Query: 111 LAELTEMIRTGHYVHRGLLNIAPDDRDSSMATSMFANKIAILIGDYLLVTANGMLARLKN 170
           ++E+      G+    G+ ++AP    +++ T      + I+I + L++    +  RL+ 
Sbjct: 6   ISEVWNWTDEGYKDEEGMKDMAPPGFSTAVDTLPIILSVLIVIANLLVMVLVALNRRLRT 65

Query: 171 QDLSYLISTALRDLSEG 187
              ++L+S A+ DL  G
Sbjct: 66  LTNAFLVSLAVSDLVTG 82


>SB_48078| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 227

 Score = 29.9 bits (64), Expect = 3.6
 Identities = 15/30 (50%), Positives = 17/30 (56%), Gaps = 1/30 (3%)

Query: 297 LVSAPVLFALHENPKL-YHGLENAKSVSDI 325
           +    +  ALHEN    YH L  AKSVSDI
Sbjct: 1   MADTSIFSALHENGNSSYHSLRKAKSVSDI 30


>SB_51785| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 348

 Score = 29.5 bits (63), Expect = 4.7
 Identities = 15/42 (35%), Positives = 27/42 (64%), Gaps = 1/42 (2%)

Query: 149 IAILIGDYLLVTANGMLARLKNQDLSY-LISTALRDLSEGEF 189
           IA++ G+ +++TA G+  +L +   +Y L+S A+ DL  G F
Sbjct: 27  IAVVSGNAIIITAFGLNTKLLHMRTNYFLVSLAVADLLVGAF 68


>SB_53261| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 128

 Score = 29.1 bits (62), Expect = 6.2
 Identities = 12/53 (22%), Positives = 26/53 (49%)

Query: 78  LQPWGLIILLLSKAVSPETSSLQNSALAQDQRILAELTEMIRTGHYVHRGLLN 130
           + P   + + L K    E  +    +  +  ++ A+LTE  +TGH ++ G ++
Sbjct: 3   VDPGDTVSITLKKEFGEEAMNSMEVSQEEKDKLHAQLTECFKTGHNIYSGYVD 55


>SB_32170| Best HMM Match : Involucrin2 (HMM E-Value=5)
          Length = 564

 Score = 29.1 bits (62), Expect = 6.2
 Identities = 21/98 (21%), Positives = 41/98 (41%), Gaps = 3/98 (3%)

Query: 279 QASAEIQKITSDNKEHYSLVSAPVLFALHENPKLYHGLENAKSVSDIDLDKLKVEILRTN 338
           Q   +++     N E+ + VS+P   A H   K Y   +  KS  D+D    + +     
Sbjct: 35  QGIQDLRSSVYPNLENTNSVSSPYFIAGHALDKKYDQYDVRKSSGDVDHFASRTDPPPNG 94

Query: 339 AIEQ---TRSLYSENANKALNYIEMFGDCESVDTIKKM 373
            + +    +    +   +A  + + FGD E V ++K +
Sbjct: 95  EVHKYPGNQQTQGQVNTQASRFFDAFGDFEHVFSVKTL 132


>SB_217| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 925

 Score = 29.1 bits (62), Expect = 6.2
 Identities = 22/85 (25%), Positives = 39/85 (45%), Gaps = 9/85 (10%)

Query: 56  VVGSNHPIVKTAKNFLYNEHNNLQPWGLIILLLSKAVS-----PETSSLQNSALAQDQRI 110
           ++G++HP+ K   N      + L P  ++I  LS+ V+        S + +     D   
Sbjct: 247 LLGTDHPLAKNQAN----GQSVLPPCNVVIRALSQYVNNVADVSNYSGIASQVFTGDSVN 302

Query: 111 LAELTEMIRTGHYVHRGLLNIAPDD 135
           L E+T+ +R     + GL + AP D
Sbjct: 303 LEEMTDRLRESIEYYSGLQSKAPQD 327


>SB_26490| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 639

 Score = 28.7 bits (61), Expect = 8.2
 Identities = 17/56 (30%), Positives = 26/56 (46%)

Query: 246 LGRGCQGALLLSGKGEKEQEIAYKFGCYLCLAWQASAEIQKITSDNKEHYSLVSAP 301
           L R     + +SG+G+K   I  K+G  L     A+   Q + S     Y +V+AP
Sbjct: 356 LARTLNPGVPISGRGQKSSVIIVKYGLLLKKIGIANKHHQPLKSQIPWRYRIVTAP 411


>SB_24420| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 608

 Score = 28.7 bits (61), Expect = 8.2
 Identities = 17/67 (25%), Positives = 31/67 (46%), Gaps = 3/67 (4%)

Query: 193 RDNQNIPIPGKPVPFETGEFDICSDTTPLKVNNILGEPIREWTLRTMFNGGTLLGRGCQG 252
           RD+ ++     P    +  +D  S    + + N++G+  R  T   + NGG   G GC+ 
Sbjct: 504 RDHHDVSGTDSPFRETSSVYDGSSLCADMAIQNVIGDSFRGATWVAIHNGG---GVGCKN 560

Query: 253 ALLLSGK 259
           + +L  K
Sbjct: 561 SFVLVPK 567


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.393 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,125,033
Number of Sequences: 59808
Number of extensions: 488635
Number of successful extensions: 1088
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 1078
Number of HSP's gapped (non-prelim): 13
length of query: 377
length of database: 16,821,457
effective HSP length: 83
effective length of query: 294
effective length of database: 11,857,393
effective search space: 3486073542
effective search space used: 3486073542
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
S2: 61 (28.7 bits)