Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA000752-TA|BGIBMGA000752-PA|IPR008949|Terpenoid synthase
(377 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBPJ4664.01 |dps1|SPBPJ694.01|decaprenyl diphosphate synthase s... 71 4e-13
SPAC19G12.12 |dlp1||decaprenyl diphosphate synthase subunit 2 Dl... 56 8e-09
SPAC24H6.06 |sld3|mug175|DNA replication pre-initiation complex ... 28 2.5
SPBC30B4.05 |kap109||karyopherin Kap109|Schizosaccharomyces pomb... 28 2.5
SPAC9E9.12c |ybt1|abc1|ABC transporter Ybt1|Schizosaccharomyces ... 27 3.3
SPAC27D7.02c |||GRIP domain protein|Schizosaccharomyces pombe|ch... 27 3.3
SPCC962.01 ||SPCP31B10.09|C2 domain protein|Schizosaccharomyces ... 27 4.3
SPAC328.01c ||SPAC3A11.01|karyopherin|Schizosaccharomyces pombe|... 27 4.3
SPAC4F8.15 |itr1|SPAC7D4.01|myo-inositol transporter Itr1|Schizo... 26 7.6
>SPBPJ4664.01 |dps1|SPBPJ694.01|decaprenyl diphosphate synthase
subunit Dps1 |Schizosaccharomyces pombe|chr 2|||Manual
Length = 378
Score = 70.5 bits (165), Expect = 4e-13
Identities = 86/356 (24%), Positives = 155/356 (43%), Gaps = 38/356 (10%)
Query: 18 WSKLIREAEKIVGYPTSFMNLRWLLSDEFANLAMHLRKVVGSNHPIVKTAKNFLYNEHNN 77
WS L + ++ + T+ N L+ +E ++ +R+++ SN ++ + Y
Sbjct: 14 WS-LGKVRSTVLRFSTTNRNASHLIKNELEQISPGIRQMLNSNSEFLEECSKY-YTIAQG 71
Query: 78 LQPWGLIILLLSKAVS-----------------PETSSLQNSALAQDQRILAELTEMIRT 120
Q ++LL+SKA S + S + Q LA++TEMI
Sbjct: 72 KQMRPSLVLLMSKATSLCHGIDRSVVGDKYIDDDDLRSFSTGQILPSQLRLAQITEMIHI 131
Query: 121 GHYVHRGLLNIAPDDRDSSMATSMFANKIAILIGDYLLVTANGMLARLKNQDLSYLISTA 180
+H +++ A R S + F N+ +IL G+++L A+ +ARL+N ++ L++T
Sbjct: 132 ASLLHDDVIDHANVRRGSPSSNVAFGNRRSILAGNFILARASTAMARLRNPQVTELLATV 191
Query: 181 LRDLSEGEFFGERDNQNIPIPGKPVPFETGEFDICSDTTPLKVNNILGEPIREWTLRTMF 240
+ DL GEF ++ + P + + FD + + LK +++ + +
Sbjct: 192 IADLVRGEFLQLKNTMD---PSS-LEIKQSNFDYYIEKSFLKTASLISKSCK-------- 239
Query: 241 NGGTLLGRGCQGALLLSGKGEKEQEIAYKFGCY-LCLAWQASAEIQKITSDNKEHYSLVS 299
T+LG+ C + + GE + I F L + + + + L +
Sbjct: 240 -ASTILGQ-C-SPTVATAAGEYGRCIGTAFQLMDDVLDYTSKDDTLGKAAGADLKLGLAT 296
Query: 300 APVLFALHENPKLYHGLENA-KSVSDIDLDKLKVEILRTNAIEQTRSLYSENANKA 354
APVLFA + P+L + N SDI + VE T+AIEQT + E KA
Sbjct: 297 APVLFAWKKYPELGAMIVNRFNHPSDIQRARSLVEC--TDAIEQTITWAKEYIKKA 350
>SPAC19G12.12 |dlp1||decaprenyl diphosphate synthase subunit 2 Dlp1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 294
Score = 56.0 bits (129), Expect = 8e-09
Identities = 48/183 (26%), Positives = 95/183 (51%), Gaps = 18/183 (9%)
Query: 18 WSKLIREAEKIVGYPTSF-MNLRWLLSDEFANLAMHLRKVVGSNHPIVKTAKNFLYNEHN 76
WS ++ +A ++ + + +L +L++E +L + +N + + K + +
Sbjct: 27 WSSILLKAVGVLSRDSRWHSDLLKMLTEEMDSLNGQINTWTDNNPLLDEITKPYRKSSTR 86
Query: 77 NLQPWGLIILLLSKA-VSPETSSLQNSALAQDQRILAELTEMIRTGHYVHRGLLNIAPDD 135
P L++LL+S+A V+ + S Q L Q + LA +TE+I + +H +NI +
Sbjct: 87 FFHP--LLVLLMSRASVNGDPPSQQ---LFQRYKQLARVTELIHAANIIH---INIGEEQ 138
Query: 136 RDSSMATSMFANKIAILIGDYLLVTANGMLARLKNQDLSYLISTALRDLSEGEFFGERDN 195
+ + K+A L+GDYLL A+ LA L+N ++ ++++ + +L EG FG R N
Sbjct: 139 SNEQI-------KLATLVGDYLLGKASVDLAHLENNAITEIMASVIANLVEGH-FGSRQN 190
Query: 196 QNI 198
++
Sbjct: 191 GSV 193
>SPAC24H6.06 |sld3|mug175|DNA replication pre-initiation complex
subunit Sld3 |Schizosaccharomyces pombe|chr 1|||Manual
Length = 668
Score = 27.9 bits (59), Expect = 2.5
Identities = 13/42 (30%), Positives = 22/42 (52%), Gaps = 1/42 (2%)
Query: 5 TQEDFVFKPPLTHWSKLIREAEKIVGYPTSFMNLRWLLSDEF 46
+++ F K P ++W K E +V P + LRW +S E+
Sbjct: 7 SKKSFCIKAP-SNWEKSYLEVWPLVTVPRQCICLRWCISKEY 47
>SPBC30B4.05 |kap109||karyopherin Kap109|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 967
Score = 27.9 bits (59), Expect = 2.5
Identities = 23/71 (32%), Positives = 33/71 (46%), Gaps = 5/71 (7%)
Query: 49 LAMHLRKVVGSNHPIVKTAKNFLYNEHNNLQPWGLIILLLSKAVSPETSSLQNSALAQDQ 108
L HL K+ + K N +N H + G +I LSK+ S L+N+ L Q
Sbjct: 588 LLQHLTKIT---EEVSKNPSNPKFN-HYLFESIGALIRSLSKSGPQTVSQLENALLPVFQ 643
Query: 109 RILAE-LTEMI 118
+L E +TE I
Sbjct: 644 NVLIEDVTEFI 654
>SPAC9E9.12c |ybt1|abc1|ABC transporter Ybt1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1427
Score = 27.5 bits (58), Expect = 3.3
Identities = 18/58 (31%), Positives = 28/58 (48%), Gaps = 2/58 (3%)
Query: 316 LENAKSVSDIDLDKLKVEIL--RTNAIEQTRSLYSENANKALNYIEMFGDCESVDTIK 371
+ A V ID++ L +E+L R + I Q L S L+ E +GD E + +K
Sbjct: 1234 MSGAVEVDGIDINSLDLEVLRQRISLIPQDPVLISGTVRSNLDPFEEYGDGELNEILK 1291
>SPAC27D7.02c |||GRIP domain protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 750
Score = 27.5 bits (58), Expect = 3.3
Identities = 22/87 (25%), Positives = 37/87 (42%), Gaps = 2/87 (2%)
Query: 290 DNKEH-YSLVSAPVLFALHENPKLYHGLENAKSVSDIDLDKLKVEILRTNA-IEQTRSLY 347
+N EH Y + + V HE L EN K + ++KL EI N+ I Q +
Sbjct: 94 ENLEHRYEMTVSEVRRLSHEVNDLQTDRENLKHQFEDQIEKLNSEISNQNSLILQKKDEL 153
Query: 348 SENANKALNYIEMFGDCESVDTIKKMI 374
++ + E ES +I++ +
Sbjct: 154 EKSIQRCSELEEKINSLESAQSIEQEV 180
>SPCC962.01 ||SPCP31B10.09|C2 domain protein|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 1429
Score = 27.1 bits (57), Expect = 4.3
Identities = 16/53 (30%), Positives = 27/53 (50%), Gaps = 4/53 (7%)
Query: 298 VSAPVLFALHENPKLYHGLENAKSVSDIDLDKLKVEILRTNAIEQTRSLYSEN 350
VS P+ LHE +H +EN K+ DI+ V+++ E++ Y +N
Sbjct: 706 VSVPLPELLHEGYDTFHFVENPKATIDIESFWTPVDVVE----EKSAKTYIDN 754
>SPAC328.01c ||SPAC3A11.01|karyopherin|Schizosaccharomyces pombe|chr
1|||Manual
Length = 1234
Score = 27.1 bits (57), Expect = 4.3
Identities = 25/129 (19%), Positives = 56/129 (43%), Gaps = 4/129 (3%)
Query: 251 QGALLLSGKGEKEQEIAYK-FGCYL-CLAWQASAEIQKITSDNKEHYSLVSAPVLFALHE 308
+G L+ G + Q+ A + C+ CL+W A+ I++ + LV P+ H
Sbjct: 217 EGWLIRWGNALESQDDALECLKCFKSCLSWVATDSIREANIVSHICQILVQGPIFLKTHA 276
Query: 309 NPKLYHGLENAKSVSDIDLDKLKVEILRTNAIEQTRSLYSENANKALNYIEMFGDCESVD 368
+Y + + D L ++ E+L +++ +Y+ ++++N +
Sbjct: 277 IDCIYICVTRTMEIDD-PLWEIVEEMLSPSSLYTLHQVYTA-TSESINIKTLSSTTPEYI 334
Query: 369 TIKKMIRTL 377
+KK+ T+
Sbjct: 335 LLKKLSETI 343
>SPAC4F8.15 |itr1|SPAC7D4.01|myo-inositol transporter
Itr1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 575
Score = 26.2 bits (55), Expect = 7.6
Identities = 17/54 (31%), Positives = 27/54 (50%), Gaps = 1/54 (1%)
Query: 135 DRDSSMATSMFANKIAILIGDYLLVTANGMLARLKNQDLSYLISTALRDLSEGE 188
D+ S +S+F NK +L D + +NG +R N ++S AL D E +
Sbjct: 29 DKKSPFESSVFENKTQVLPVDSVSRLSNGARSR-SNSNISLSEPHALNDTVEDQ 81
Database: spombe
Posted date: Oct 3, 2007 3:31 PM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.393
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,726,895
Number of Sequences: 5004
Number of extensions: 73675
Number of successful extensions: 191
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 6
Number of HSP's that attempted gapping in prelim test: 187
Number of HSP's gapped (non-prelim): 10
length of query: 377
length of database: 2,362,478
effective HSP length: 74
effective length of query: 303
effective length of database: 1,992,182
effective search space: 603631146
effective search space used: 603631146
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
S2: 55 (26.2 bits)
- SilkBase 1999-2023 -