Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA000752-TA|BGIBMGA000752-PA|IPR008949|Terpenoid synthase
(377 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
06_03_1127 - 27807784-27807963,27808362-27808460,27809076-278091... 64 1e-10
05_07_0261 + 28764571-28764733,28766039-28766153,28766241-287663... 61 1e-09
12_01_0979 - 9914779-9915327,9915409-9915536,9915947-9916050,991... 58 2e-08
08_01_0622 + 5429317-5429403,5429673-5429765,5429950-5430030,543... 47 2e-05
10_08_0404 + 17653942-17654877,17656616-17657137 32 0.66
11_05_0099 - 19044772-19044837,19044896-19045051,19045529-190456... 29 4.6
>06_03_1127 -
27807784-27807963,27808362-27808460,27809076-27809165,
27809272-27809404,27809539-27809624,27810028-27810099,
27810329-27810415,27810485-27810616,27810718-27810789,
27810957-27811037,27811871-27811963,27812298-27812465
Length = 430
Score = 64.5 bits (150), Expect = 1e-10
Identities = 46/157 (29%), Positives = 79/157 (50%), Gaps = 9/157 (5%)
Query: 41 LLSDEFANLAMHLRKVVGSNHPIVKTAKNFLYN---EHNNLQPWGLIILL------LSKA 91
L++DE + LA LR +V + P + +A + + E +P L+++ LS +
Sbjct: 95 LVADELSLLANRLRSMVAAEVPKLASAAEYFFKVGAEGKRFRPTVLLLMASALKFPLSDS 154
Query: 92 VSPETSSLQNSALAQDQRILAELTEMIRTGHYVHRGLLNIAPDDRDSSMATSMFANKIAI 151
++ + L Q+ +AE+TEMI +H +L+ A R S + NK+++
Sbjct: 155 TEVGVLTILANKLRTRQQNIAEITEMIHVASLLHDDVLDDADTRRGVSSLNCIMGNKLSV 214
Query: 152 LIGDYLLVTANGMLARLKNQDLSYLISTALRDLSEGE 188
L GD+LL A LA L N ++ L++TA+ L GE
Sbjct: 215 LAGDFLLSRACVALAALGNTEVVSLMATAVEHLVTGE 251
>05_07_0261 +
28764571-28764733,28766039-28766153,28766241-28766344,
28766571-28766698,28766765-28767328
Length = 357
Score = 61.3 bits (142), Expect = 1e-09
Identities = 70/325 (21%), Positives = 140/325 (43%), Gaps = 39/325 (12%)
Query: 60 NHPIVKTAKNFLYNEHNNLQPWGLIILLLSKAVSPETSSLQNSALAQDQRILAELTEMIR 119
N +V A+ L+P ++ L+S+A + L+ L + + LAE+ EMI
Sbjct: 56 NPVLVSAAEQIFGAGGKRLRP--ALVFLVSRATAELAGLLE---LTTEHQRLAEIIEMIH 110
Query: 120 TGHYVHRGLLNIAPDDRDSSMATSMFANKIAILIGDYLLVTANGMLARLKNQDLSYLIST 179
T +H +++ + R ++ ++A+L GD++ ++ LA L+N ++ LIS
Sbjct: 111 TASLIHDDVIDDSGMRRGKETIHQLYGTRVAVLAGDFMFAQSSWFLANLENIEVIKLISQ 170
Query: 180 ALRDLSEGEFFGERDNQNIPIPGKPVPFETGEFDICSDTTPLKVNNILGEPIREWTLRTM 239
+ +Q I F +GE S V + ++ L++
Sbjct: 171 MM------------CSQVIK------DFASGEIKQASTLFDCDVT------LDDYLLKSY 206
Query: 240 FNGGTLLGRGCQGALLLSGKGEKEQEIAYKFGCYLCLAWQASAEIQKITSDNKE------ 293
+ +LL + A + SG E Y++G L L++Q +I T ++
Sbjct: 207 YKTASLLASSTRSAAIFSGVSTTICEQMYEYGRNLGLSFQVVDDILDFTQSAEQLGKPAG 266
Query: 294 ---HYSLVSAPVLFALHENPKLYHGLENAKSVSDIDLDKLKVEILRTNAIEQTRSLYSEN 350
++APV+FAL + PKL +++ S SD + + + R+ I + + L E
Sbjct: 267 SDLAKGNLTAPVIFALQDEPKLREIIDSEFSESDSLATAIDL-VHRSGGIRRAQELAKEK 325
Query: 351 ANKALNYIEMFGDCESVDTIKKMIR 375
+ AL ++ + T++ +++
Sbjct: 326 GDLALQNLQCLPKSQFRSTLENVVK 350
>12_01_0979 -
9914779-9915327,9915409-9915536,9915947-9916050,
9919832-9919946,9921036-9921528
Length = 462
Score = 57.6 bits (133), Expect = 2e-08
Identities = 36/150 (24%), Positives = 80/150 (53%), Gaps = 8/150 (5%)
Query: 42 LSDEFANLAMH--LRKVVGSNHPIVKTAKNFLYNEHNN-LQPWGLIILLLSKAVSPETSS 98
+S F++ ++H ++ V + +P++ +A ++ L+P ++ L+S+A +
Sbjct: 145 VSFTFSSQSLHHSVQLVHDTKNPVLVSAAEQIFGAGGKRLRP--ALVFLVSRATAELAGL 202
Query: 99 LQNSALAQDQRILAELTEMIRTGHYVHRGLLNIAPDDRDSSMATSMFANKIAILIGDYLL 158
L+ L + + LAE+ EMI T +H +++ + R ++ ++A+L GD++
Sbjct: 203 LE---LTTEHQRLAEIIEMIHTASLIHDDVIDDSGMRRGKETIHQLYGTRVAVLAGDFMF 259
Query: 159 VTANGMLARLKNQDLSYLISTALRDLSEGE 188
++ LA L+N ++ LIS ++D + GE
Sbjct: 260 AQSSWFLANLENIEVIKLISQVIKDFASGE 289
Score = 37.1 bits (82), Expect = 0.023
Identities = 30/152 (19%), Positives = 70/152 (46%), Gaps = 10/152 (6%)
Query: 233 EWTLRTMFNGGTLLGRGCQGALLLSGKGEKEQEIAYKFGCYLCLAWQASAEIQKITSDNK 292
++ L++ + +L+ + A + SG E Y++G L L++Q +I T +
Sbjct: 305 DYLLKSYYKTASLIAASTRSAAIFSGVSTAICEQMYEYGRNLGLSFQVVDDILDFTQSAE 364
Query: 293 E---------HYSLVSAPVLFALHENPKLYHGLENAKSVSDIDLDKLKVEILRTNAIEQT 343
+ ++APV+FAL + P+L +++ S ++ +++ + R+ I++
Sbjct: 365 QLGKPAGSDLAKGNLTAPVIFALQDEPQLREIIDSEFSETNSLATAIEL-VHRSGGIKRA 423
Query: 344 RSLYSENANKALNYIEMFGDCESVDTIKKMIR 375
L E A+ ++ E T++ M++
Sbjct: 424 HELAREKGEIAIQSLQCLPRSEFRSTLENMVK 455
>08_01_0622 +
5429317-5429403,5429673-5429765,5429950-5430030,
5430166-5430237,5430379-5430495,5430585-5430671,
5431126-5431200,5431442-5431566,5432489-5432621,
5432719-5432808,5433210-5433389
Length = 379
Score = 47.2 bits (107), Expect = 2e-05
Identities = 53/253 (20%), Positives = 107/253 (42%), Gaps = 21/253 (8%)
Query: 41 LLSDEFANLAMHLRKVVGSNHPIVKTAKNFLYNEH-NNLQPWGLIILLLSKAVSPETSSL 99
L+ DE + ++ LR +V + P + A + + + ++LL++ ++S + +
Sbjct: 68 LIKDEVSEISNRLRSMVVAEVPELTLAAGYFFRAGAEGKRTCPTVLLLMASSISMDMADP 127
Query: 100 ---QNSALAQDQRILAELTEMIRTGHYVHRGLLNIAPDDRDSSMATSMFANKIAILIGDY 156
+ + + LAE+TE+I +H +L+ A R + K+A+L GD+
Sbjct: 128 IVGSKNEIRERYMRLAEITELIHVTSLIHDDVLDDANTRRGMDSLNCVMGKKLAVLAGDF 187
Query: 157 LLVTANGMLARLKNQDLSYLISTALRDLSEGEFFGERDNQNIPIPGKPV-PFETGEFDIC 215
LL A A + + I FF Q I + V TGEF
Sbjct: 188 LLSKAFSTAAVSLDNAEGHNIKVI-------PFF---SLQVILLLATAVNNLVTGEF--- 234
Query: 216 SDTTPLKVNNILGEPIREWTLRTMFNGGTLLGRGCQGALLLSGKGEKEQEIAYKFGCYLC 275
+++ I + + ++ + L+ C+ +L+G+ + +AY++G +L
Sbjct: 235 ---MQMRITPIQRCSMDYYLQKSYYKTAALISNSCKAVAVLAGQTAEVATLAYQYGKHLG 291
Query: 276 LAWQASAEIQKIT 288
+A+Q +I T
Sbjct: 292 IAYQLIDDILDFT 304
>10_08_0404 + 17653942-17654877,17656616-17657137
Length = 485
Score = 32.3 bits (70), Expect = 0.66
Identities = 20/45 (44%), Positives = 30/45 (66%), Gaps = 1/45 (2%)
Query: 316 LENAKSVSDIDLDKLKVEILRTNAIEQTRSLYSENANKALNYIEM 360
+E AK+V+ I +L+VE+ RTNA QT L +E+ +KA+ EM
Sbjct: 268 VEAAKAVA-IREAELQVEVERTNASRQTEKLKAEHLSKAVVDYEM 311
>11_05_0099 -
19044772-19044837,19044896-19045051,19045529-19045653,
19045773-19045844,19045947-19046051,19046509-19046563,
19047334-19047414,19047499-19047633,19048279-19048342,
19048844-19048911,19049082-19049168,19050247-19050501,
19050616-19050738,19050866-19051150,19051712-19051851,
19052385-19052445,19052537-19052637,19052807-19052870,
19053020-19053127
Length = 716
Score = 29.5 bits (63), Expect = 4.6
Identities = 12/40 (30%), Positives = 23/40 (57%)
Query: 291 NKEHYSLVSAPVLFALHENPKLYHGLENAKSVSDIDLDKL 330
+KEH+ +S P + ++ N + H A S +++D DK+
Sbjct: 450 SKEHFKGLSFPTISSVGPNAAVIHYSPEASSCAELDADKI 489
Database: rice
Posted date: Oct 3, 2007 3:31 PM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.393
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,626,776
Number of Sequences: 37544
Number of extensions: 443074
Number of successful extensions: 855
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 843
Number of HSP's gapped (non-prelim): 10
length of query: 377
length of database: 14,793,348
effective HSP length: 83
effective length of query: 294
effective length of database: 11,677,196
effective search space: 3433095624
effective search space used: 3433095624
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
S2: 61 (28.7 bits)
- SilkBase 1999-2023 -