GeneModel BLAST Result against celegans

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000752-TA|BGIBMGA000752-PA|IPR008949|Terpenoid synthase
         (377 letters)

Database: celegans 
           27,539 sequences; 12,573,161 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U80443-7|AAB37678.2|  393|Caenorhabditis elegans Coenzyme q (ubi...    67   2e-11
U88167-2|AAB42225.3|  908|Caenorhabditis elegans Hypothetical pr...    33   0.25 
Z69787-4|CAA93639.1|  305|Caenorhabditis elegans Hypothetical pr...    31   1.8  
AF006635-1|AAB62695.1| 1116|Caenorhabditis elegans P-type ATPase...    28   9.4  
AC006834-1|AAF40010.3| 8545|Caenorhabditis elegans Abnormal nucl...    28   9.4  

>U80443-7|AAB37678.2|  393|Caenorhabditis elegans Coenzyme q
           (ubiquinone) biosynthesisprotein 1 protein.
          Length = 393

 Score = 67.3 bits (157), Expect = 2e-11
 Identities = 64/275 (23%), Positives = 131/275 (47%), Gaps = 38/275 (13%)

Query: 92  VSPETSSLQ-NSALAQDQRILAELTEMIRTGHYVHRGLLNIAPDDRDSSMATSMFANKIA 150
           +S E S +  + ++ Q+Q  +  + EMI T   VH  +++ A   R S+   +++ NK++
Sbjct: 118 LSTERSGIAAHLSVCQNQYKIGMIAEMIHTASLVHDDVIDEANTRRGSASVNAVWGNKMS 177

Query: 151 ILIGDYLLVTANGMLARLKNQDLSYLISTALRDLSEGEFFGERDNQNIPIPGKPVPFETG 210
           +L+GD++L  A  +L  +   ++  ++++ + DL  GEF      Q    P         
Sbjct: 178 VLVGDFILARATQILCSIGKPNIISVMASIIEDLVLGEFM-----QMSTTP--------- 223

Query: 211 EFDICSDTTPLKVNNILGEPIREWTLRTMFNGGTLLGRGCQGALLLS-GKGEKEQEIAYK 269
                +D TP+       + ++ +  +T     +L    C+ A +L+ G   K  EIA++
Sbjct: 224 -----TDATPV-------DRMKAYIEKTHRKTASLFASSCRSAAILADGSDLKLHEIAFE 271

Query: 270 FGCYLCLAWQASAEIQKITSDNKE---------HYSLVSAPVLFALHENPKLYHGLENAK 320
           +G  L +A+Q + ++    +   E            L +APVL+A  + P+L + +   K
Sbjct: 272 YGRNLGIAFQLADDLLDFIATADEMGKPVAADLKLGLATAPVLYACEQYPEL-NTMLLRK 330

Query: 321 SVSDIDLDKLKVEILRTNAIEQTRSLYSENANKAL 355
              D D +K +  ++ ++ +++TR L    + KA+
Sbjct: 331 FKHDGDAEKAREIVVNSDGMDKTRRLIDSYSQKAV 365


>U88167-2|AAB42225.3|  908|Caenorhabditis elegans Hypothetical
           protein D2092.5 protein.
          Length = 908

 Score = 33.5 bits (73), Expect = 0.25
 Identities = 21/62 (33%), Positives = 31/62 (50%), Gaps = 3/62 (4%)

Query: 314 HGLENAKSVSDIDLDKLKVEILRTNAIEQTRSLYSENANKALNYIEMFGDCESVDTIKKM 373
           HGL N K  +DID   +++  +R  + +   SL  EN  K  +  +  GD    DTIK +
Sbjct: 668 HGLRNYKEENDIDSLNMELRFVRDKSHQMEESLAGENKLKQ-SLFKCLGDAR--DTIKSL 724

Query: 374 IR 375
            R
Sbjct: 725 ER 726


>Z69787-4|CAA93639.1|  305|Caenorhabditis elegans Hypothetical
           protein C44C10.5 protein.
          Length = 305

 Score = 30.7 bits (66), Expect = 1.8
 Identities = 18/70 (25%), Positives = 35/70 (50%), Gaps = 1/70 (1%)

Query: 286 KITSDNKEHYSLVSAPVLFALHENPKLYHGLENAKSVSDIDLDKLKVEILRTNAIEQTRS 345
           K+T DN E + L    +  ++   PKL+      KS+ +  L K +V++    A +Q++ 
Sbjct: 36  KVTQDNAEDFGLFLEAIFDSIEHKPKLFLNDLERKSL-EKKLTKEQVKLTNIKASKQSQK 94

Query: 346 LYSENANKAL 355
           +   +  KA+
Sbjct: 95  VTKSDDPKAI 104


>AF006635-1|AAB62695.1| 1116|Caenorhabditis elegans P-type ATPase
            protein.
          Length = 1116

 Score = 28.3 bits (60), Expect = 9.4
 Identities = 26/99 (26%), Positives = 45/99 (45%), Gaps = 7/99 (7%)

Query: 86   LLLSKAVSPETSSLQNSALAQDQRILAELTEMIRTGHYVHRGLLNIAPDDRDSSMATSMF 145
            LLL     P  ++L  ++  + Q+ L    E   +   VHRGL + A     +S   S+ 
Sbjct: 1023 LLLKNFRKPTIANLYTTSFKRHQKFL----ESALSKFQVHRGLDDSAVFRGAASSKLSIL 1078

Query: 146  ANKIAILIGDYLLVTANGMLARLKNQDLSYLISTALRDL 184
            ++K+  L+G    + ++G     K Q L   + + L DL
Sbjct: 1079 SSKVGSLLGSTTSIVSSG---SSKKQRLLDNVGSDLEDL 1114


>AC006834-1|AAF40010.3| 8545|Caenorhabditis elegans Abnormal nuclear
            anchorage protein1 protein.
          Length = 8545

 Score = 28.3 bits (60), Expect = 9.4
 Identities = 20/62 (32%), Positives = 29/62 (46%), Gaps = 1/62 (1%)

Query: 307  HENPKLYHGLE-NAKSVSDIDLDKLKVEILRTNAIEQTRSLYSENANKALNYIEMFGDCE 365
            H+  +L   L+ N      I LD+LK + L+T   E T SL  E A   L  I+   + +
Sbjct: 3834 HDKEQLILSLKLNISQFEQIPLDQLKSDDLKTAEKEITNSLKPEEAEPLLAKIQELREAK 3893

Query: 366  SV 367
             V
Sbjct: 3894 RV 3895



 Score = 28.3 bits (60), Expect = 9.4
 Identities = 20/62 (32%), Positives = 29/62 (46%), Gaps = 1/62 (1%)

Query: 307  HENPKLYHGLE-NAKSVSDIDLDKLKVEILRTNAIEQTRSLYSENANKALNYIEMFGDCE 365
            H+  +L   L+ N      I LD+LK + L+T   E T SL  E A   L  I+   + +
Sbjct: 4788 HDKEQLILSLKLNISQFEQIPLDQLKSDDLKTAEKEITNSLKPEEAEPLLAKIQELREAK 4847

Query: 366  SV 367
             V
Sbjct: 4848 RV 4849



 Score = 28.3 bits (60), Expect = 9.4
 Identities = 20/62 (32%), Positives = 29/62 (46%), Gaps = 1/62 (1%)

Query: 307  HENPKLYHGLE-NAKSVSDIDLDKLKVEILRTNAIEQTRSLYSENANKALNYIEMFGDCE 365
            H+  +L   L+ N      I LD+LK + L+T   E T SL  E A   L  I+   + +
Sbjct: 5691 HDKEQLILSLKLNISQFEQIPLDQLKSDDLKTAEKEITNSLKPEEAEPLLAKIQELREAK 5750

Query: 366  SV 367
             V
Sbjct: 5751 RV 5752



 Score = 28.3 bits (60), Expect = 9.4
 Identities = 20/62 (32%), Positives = 29/62 (46%), Gaps = 1/62 (1%)

Query: 307  HENPKLYHGLE-NAKSVSDIDLDKLKVEILRTNAIEQTRSLYSENANKALNYIEMFGDCE 365
            H+  +L   L+ N      I LD+LK + L+T   E T SL  E A   L  I+   + +
Sbjct: 6594 HDKEQLILSLKLNISQFEQIPLDQLKSDDLKTAEKEITNSLKPEEAEPLLAKIQELREAK 6653

Query: 366  SV 367
             V
Sbjct: 6654 RV 6655



 Score = 28.3 bits (60), Expect = 9.4
 Identities = 20/62 (32%), Positives = 29/62 (46%), Gaps = 1/62 (1%)

Query: 307  HENPKLYHGLE-NAKSVSDIDLDKLKVEILRTNAIEQTRSLYSENANKALNYIEMFGDCE 365
            H+  +L   L+ N      I LD+LK + L+T   E T SL  E A   L  I+   + +
Sbjct: 7497 HDKEQLILSLKLNISQFEQIPLDQLKSDDLKTAEKEITNSLKPEEAEPLLAKIQELREAK 7556

Query: 366  SV 367
             V
Sbjct: 7557 RV 7558


  Database: celegans
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 12,573,161
  Number of sequences in database:  27,539
  
Lambda     K      H
   0.318    0.134    0.393 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,199,944
Number of Sequences: 27539
Number of extensions: 390759
Number of successful extensions: 891
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 884
Number of HSP's gapped (non-prelim): 10
length of query: 377
length of database: 12,573,161
effective HSP length: 83
effective length of query: 294
effective length of database: 10,287,424
effective search space: 3024502656
effective search space used: 3024502656
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
S2: 60 (28.3 bits)