Silkworm BLAST Result against nematostella

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000751-TA|BGIBMGA000751-PA|undefined
         (64 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_48146| Best HMM Match : No HMM Matches (HMM E-Value=.)              62   6e-11
SB_26157| Best HMM Match : No HMM Matches (HMM E-Value=.)              41   2e-04
SB_78| Best HMM Match : No HMM Matches (HMM E-Value=.)                 27   2.2  

>SB_48146| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 810

 Score = 62.1 bits (144), Expect = 6e-11
 Identities = 30/47 (63%), Positives = 33/47 (70%), Gaps = 1/47 (2%)

Query: 8   NASIGSXXXXXXXXXXXNG-KKNQKKRGIFPKVATNILRAWLFQHLT 53
           NASIGS            G KK+QKKRGIFPK ATNI++AWLFQHLT
Sbjct: 274 NASIGSDDGGSETADDDQGGKKSQKKRGIFPKAATNIMKAWLFQHLT 320


>SB_26157| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1097

 Score = 40.7 bits (91), Expect = 2e-04
 Identities = 14/28 (50%), Positives = 21/28 (75%)

Query: 25  NGKKNQKKRGIFPKVATNILRAWLFQHL 52
           N +  + KRG+ PK AT+I++ WLFQH+
Sbjct: 944 NDRSKKSKRGVLPKQATSIMKTWLFQHI 971


>SB_78| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 217

 Score = 27.1 bits (57), Expect = 2.2
 Identities = 9/25 (36%), Positives = 15/25 (60%)

Query: 27 KKNQKKRGIFPKVATNILRAWLFQH 51
          K+N   R +FPK+  ++ R  + QH
Sbjct: 20 KRNDDSRYVFPKIPADLTREMILQH 44


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.315    0.129    0.368 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,521,150
Number of Sequences: 59808
Number of extensions: 30417
Number of successful extensions: 36
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 33
Number of HSP's gapped (non-prelim): 3
length of query: 64
length of database: 16,821,457
effective HSP length: 43
effective length of query: 21
effective length of database: 14,249,713
effective search space: 299243973
effective search space used: 299243973
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)
S2: 52 (25.0 bits)