GeneModel BLAST Result against tribolium

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000751-TA|BGIBMGA000751-PA|undefined
         (64 letters)

Database: tribolium 
           317 sequences; 114,650 total letters

Searching....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY584475-1|AAS93634.1|  209|Tribolium castaneum homothorax protein.    82   4e-19
AJ518941-1|CAD57735.1|  456|Tribolium castaneum homothorax protein.    82   4e-19
AJ518940-1|CAD57734.1|  361|Tribolium castaneum extradenticle pr...    23   0.33 
EF222292-1|ABN79652.1|  354|Tribolium castaneum cardioactive pep...    20   2.3  

>AY584475-1|AAS93634.1|  209|Tribolium castaneum homothorax protein.
          Length = 209

 Score = 82.2 bits (194), Expect = 4e-19
 Identities = 39/50 (78%), Positives = 39/50 (78%)

Query: 4   GDASNASIGSXXXXXXXXXXXNGKKNQKKRGIFPKVATNILRAWLFQHLT 53
           GDASNASIGS           NGKKNQKKRGIFPKVATNILRAWLFQHLT
Sbjct: 153 GDASNASIGSGEGTGEEDDDTNGKKNQKKRGIFPKVATNILRAWLFQHLT 202


>AJ518941-1|CAD57735.1|  456|Tribolium castaneum homothorax protein.
          Length = 456

 Score = 82.2 bits (194), Expect = 4e-19
 Identities = 39/50 (78%), Positives = 39/50 (78%)

Query: 4   GDASNASIGSXXXXXXXXXXXNGKKNQKKRGIFPKVATNILRAWLFQHLT 53
           GDASNASIGS           NGKKNQKKRGIFPKVATNILRAWLFQHLT
Sbjct: 309 GDASNASIGSGEGTGEEDDDTNGKKNQKKRGIFPKVATNILRAWLFQHLT 358


>AJ518940-1|CAD57734.1|  361|Tribolium castaneum extradenticle
           protein.
          Length = 361

 Score = 22.6 bits (46), Expect = 0.33
 Identities = 9/24 (37%), Positives = 15/24 (62%)

Query: 30  QKKRGIFPKVATNILRAWLFQHLT 53
           ++KR  F K A+ IL  + + HL+
Sbjct: 231 RRKRRNFSKQASEILNEYFYSHLS 254


>EF222292-1|ABN79652.1|  354|Tribolium castaneum cardioactive
           peptide receptor 2 protein.
          Length = 354

 Score = 19.8 bits (39), Expect = 2.3
 Identities = 10/19 (52%), Positives = 10/19 (52%)

Query: 34  GIFPKVATNILRAWLFQHL 52
           G  PK  TNI  A L Q L
Sbjct: 312 GHIPKTQTNIAIATLIQSL 330


  Database: tribolium
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 114,650
  Number of sequences in database:  317
  
Lambda     K      H
   0.315    0.129    0.368 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,836
Number of Sequences: 317
Number of extensions: 211
Number of successful extensions: 4
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of query: 64
length of database: 114,650
effective HSP length: 43
effective length of query: 21
effective length of database: 101,019
effective search space:  2121399
effective search space used:  2121399
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 34 (18.4 bits)
S2: 34 (17.8 bits)