GeneModel BLAST Result against rice

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000751-TA|BGIBMGA000751-PA|undefined
         (64 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

10_08_0749 - 20282982-20283632,20284081-20284141,20284828-202848...    29   0.62 
03_01_0456 - 3495537-3496205,3496304-3496364,3496447-3496829,349...    29   0.62 
05_05_0075 + 22209322-22210041,22210323-22210391,22210775-222111...    28   0.82 
03_05_1024 + 29802831-29804208,29804710-29804759,29805569-298059...    28   0.82 
01_06_1342 - 36438869-36439459,36439567-36439627,36440751-364411...    28   0.82 
11_01_0371 - 2821224-2822036,2822162-2822222,2823755-2824158           27   1.4  
03_05_0696 - 26856413-26856416,26857917-26858524,26859041-268591...    27   1.4  
03_01_0167 + 1374578-1375243,1375895-1376277,1377947-1378007,137...    27   1.4  
12_02_1245 - 27308143-27308787,27308923-27308983,27309064-273094...    27   1.9  
06_01_0061 + 527417-527856,527957-528017,528113-528685                 27   1.9  

>10_08_0749 -
           20282982-20283632,20284081-20284141,20284828-20284872,
           20285293-20285672,20286382-20287050
          Length = 601

 Score = 28.7 bits (61), Expect = 0.62
 Identities = 12/20 (60%), Positives = 17/20 (85%), Gaps = 1/20 (5%)

Query: 32  KRGIFPKVATNILRAWLFQH 51
           +RG+ P+ A +ILRAWLF+H
Sbjct: 328 QRGL-PERAVSILRAWLFEH 346


>03_01_0456 -
           3495537-3496205,3496304-3496364,3496447-3496829,
           3496924-3497613
          Length = 600

 Score = 28.7 bits (61), Expect = 0.62
 Identities = 11/20 (55%), Positives = 17/20 (85%), Gaps = 1/20 (5%)

Query: 32  KRGIFPKVATNILRAWLFQH 51
           +RG+ P+ A ++LRAWLF+H
Sbjct: 336 QRGL-PESAVSVLRAWLFEH 354


>05_05_0075 +
           22209322-22210041,22210323-22210391,22210775-22211145,
           22212291-22212351,22212496-22213086
          Length = 603

 Score = 28.3 bits (60), Expect = 0.82
 Identities = 11/20 (55%), Positives = 17/20 (85%), Gaps = 1/20 (5%)

Query: 32  KRGIFPKVATNILRAWLFQH 51
           +RG+ P+ A ++LRAWLF+H
Sbjct: 365 QRGL-PERAVSVLRAWLFEH 383


>03_05_1024 +
           29802831-29804208,29804710-29804759,29805569-29805954,
           29807753-29807813,29807921-29807941
          Length = 631

 Score = 28.3 bits (60), Expect = 0.82
 Identities = 11/20 (55%), Positives = 17/20 (85%), Gaps = 1/20 (5%)

Query: 32  KRGIFPKVATNILRAWLFQH 51
           +RG+ P+ + NILR+WLF+H
Sbjct: 583 QRGL-PERSVNILRSWLFEH 601


>01_06_1342 -
           36438869-36439459,36439567-36439627,36440751-36441130,
           36441955-36442761
          Length = 612

 Score = 28.3 bits (60), Expect = 0.82
 Identities = 11/20 (55%), Positives = 17/20 (85%), Gaps = 1/20 (5%)

Query: 32  KRGIFPKVATNILRAWLFQH 51
           +RG+ P+ A ++LRAWLF+H
Sbjct: 374 QRGL-PERAVSVLRAWLFEH 392


>11_01_0371 - 2821224-2822036,2822162-2822222,2823755-2824158
          Length = 425

 Score = 27.5 bits (58), Expect = 1.4
 Identities = 11/20 (55%), Positives = 17/20 (85%), Gaps = 1/20 (5%)

Query: 32  KRGIFPKVATNILRAWLFQH 51
           +RG+ P+ + +ILRAWLF+H
Sbjct: 113 QRGL-PERSVSILRAWLFEH 131


>03_05_0696 -
           26856413-26856416,26857917-26858524,26859041-26859101,
           26859181-26859557,26860314-26861156
          Length = 630

 Score = 27.5 bits (58), Expect = 1.4
 Identities = 11/20 (55%), Positives = 17/20 (85%), Gaps = 1/20 (5%)

Query: 32  KRGIFPKVATNILRAWLFQH 51
           +RG+ P+ + +ILRAWLF+H
Sbjct: 385 QRGL-PENSVSILRAWLFEH 403


>03_01_0167 +
           1374578-1375243,1375895-1376277,1377947-1378007,
           1378721-1379386
          Length = 591

 Score = 27.5 bits (58), Expect = 1.4
 Identities = 12/20 (60%), Positives = 15/20 (75%), Gaps = 1/20 (5%)

Query: 32  KRGIFPKVATNILRAWLFQH 51
           +RG+ P  A  ILRAWLF+H
Sbjct: 328 QRGL-PDRAVTILRAWLFEH 346


>12_02_1245 -
           27308143-27308787,27308923-27308983,27309064-27309440,
           27309657-27310517
          Length = 647

 Score = 27.1 bits (57), Expect = 1.9
 Identities = 11/20 (55%), Positives = 16/20 (80%), Gaps = 1/20 (5%)

Query: 32  KRGIFPKVATNILRAWLFQH 51
           +RG+ P+ +  ILRAWLF+H
Sbjct: 391 QRGL-PENSVTILRAWLFEH 409


>06_01_0061 + 527417-527856,527957-528017,528113-528685
          Length = 357

 Score = 27.1 bits (57), Expect = 1.9
 Identities = 11/20 (55%), Positives = 16/20 (80%), Gaps = 1/20 (5%)

Query: 32  KRGIFPKVATNILRAWLFQH 51
           +RG+ P+ A  +LRAWLF+H
Sbjct: 125 QRGL-PERAVAVLRAWLFEH 143


  Database: rice
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.315    0.129    0.368 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,357,886
Number of Sequences: 37544
Number of extensions: 27827
Number of successful extensions: 44
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 34
Number of HSP's gapped (non-prelim): 10
length of query: 64
length of database: 14,793,348
effective HSP length: 44
effective length of query: 20
effective length of database: 13,141,412
effective search space: 262828240
effective search space used: 262828240
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)
S2: 52 (25.0 bits)