GeneModel BLAST Result against celegans

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000751-TA|BGIBMGA000751-PA|undefined
         (64 letters)

Database: celegans 
           27,539 sequences; 12,573,161 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF427476-1|AAL65144.1|  523|Caenorhabditis elegans UNC-62 splice...    41   9e-05
AF427474-1|AAL65142.1|  560|Caenorhabditis elegans UNC-62 splice...    41   9e-05
AC006692-3|AAO61420.1|  523|Caenorhabditis elegans Uncoordinated...    41   9e-05
AC006692-1|AAO61421.1|  560|Caenorhabditis elegans Uncoordinated...    41   9e-05

>AF427476-1|AAL65144.1|  523|Caenorhabditis elegans UNC-62 splice
           variant 1b-7a protein.
          Length = 523

 Score = 41.1 bits (92), Expect = 9e-05
 Identities = 23/51 (45%), Positives = 28/51 (54%), Gaps = 2/51 (3%)

Query: 5   DASNASIGSXXXXXXXXXXXNGKKNQKKRG--IFPKVATNILRAWLFQHLT 53
           +A+ +S  S           NG +  K RG  IFPK ATN LR WLFQ+LT
Sbjct: 325 EAAPSSASSSSSSKNKPSTPNGGRIGKSRGRGIFPKQATNRLRQWLFQNLT 375


>AF427474-1|AAL65142.1|  560|Caenorhabditis elegans UNC-62 splice
           variant 1a-7a protein.
          Length = 560

 Score = 41.1 bits (92), Expect = 9e-05
 Identities = 23/51 (45%), Positives = 28/51 (54%), Gaps = 2/51 (3%)

Query: 5   DASNASIGSXXXXXXXXXXXNGKKNQKKRG--IFPKVATNILRAWLFQHLT 53
           +A+ +S  S           NG +  K RG  IFPK ATN LR WLFQ+LT
Sbjct: 362 EAAPSSASSSSSSKNKPSTPNGGRIGKSRGRGIFPKQATNRLRQWLFQNLT 412


>AC006692-3|AAO61420.1|  523|Caenorhabditis elegans Uncoordinated
           protein 62, isoform e protein.
          Length = 523

 Score = 41.1 bits (92), Expect = 9e-05
 Identities = 23/51 (45%), Positives = 28/51 (54%), Gaps = 2/51 (3%)

Query: 5   DASNASIGSXXXXXXXXXXXNGKKNQKKRG--IFPKVATNILRAWLFQHLT 53
           +A+ +S  S           NG +  K RG  IFPK ATN LR WLFQ+LT
Sbjct: 325 EAAPSSASSSSSSKNKPSTPNGGRIGKSRGRGIFPKQATNRLRQWLFQNLT 375


>AC006692-1|AAO61421.1|  560|Caenorhabditis elegans Uncoordinated
           protein 62, isoform f protein.
          Length = 560

 Score = 41.1 bits (92), Expect = 9e-05
 Identities = 23/51 (45%), Positives = 28/51 (54%), Gaps = 2/51 (3%)

Query: 5   DASNASIGSXXXXXXXXXXXNGKKNQKKRG--IFPKVATNILRAWLFQHLT 53
           +A+ +S  S           NG +  K RG  IFPK ATN LR WLFQ+LT
Sbjct: 362 EAAPSSASSSSSSKNKPSTPNGGRIGKSRGRGIFPKQATNRLRQWLFQNLT 412


  Database: celegans
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 12,573,161
  Number of sequences in database:  27,539
  
Lambda     K      H
   0.315    0.129    0.368 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,143,465
Number of Sequences: 27539
Number of extensions: 24464
Number of successful extensions: 34
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 30
Number of HSP's gapped (non-prelim): 4
length of query: 64
length of database: 12,573,161
effective HSP length: 44
effective length of query: 20
effective length of database: 11,361,445
effective search space: 227228900
effective search space used: 227228900
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)
S2: 51 (24.6 bits)