Silkworm BLAST Result against tribolium

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000750-TA|BGIBMGA000750-PA|undefined
         (97 letters)

Database: tribolium 
           317 sequences; 114,650 total letters

Searching....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY584475-1|AAS93634.1|  209|Tribolium castaneum homothorax protein.    48   2e-08
AJ518941-1|CAD57735.1|  456|Tribolium castaneum homothorax protein.    48   2e-08
AY884065-1|AAX84206.1|  697|Tribolium castaneum laccase 1 protein.     20   4.0  
DQ659250-1|ABG47448.1| 2700|Tribolium castaneum chitinase 10 pro...    19   7.0  

>AY584475-1|AAS93634.1|  209|Tribolium castaneum homothorax protein.
          Length = 209

 Score = 48.0 bits (109), Expect = 2e-08
 Identities = 26/38 (68%), Positives = 28/38 (73%), Gaps = 9/38 (23%)

Query: 3   VGKWCPSRREWSSPP------DVARR--VYSSVFLGSP 32
           +GKWCP RREWSSPP      D ARR  +YSSVFLGSP
Sbjct: 116 MGKWCP-RREWSSPPDARAASDAARRGVLYSSVFLGSP 152


>AJ518941-1|CAD57735.1|  456|Tribolium castaneum homothorax protein.
          Length = 456

 Score = 48.0 bits (109), Expect = 2e-08
 Identities = 26/38 (68%), Positives = 28/38 (73%), Gaps = 9/38 (23%)

Query: 3   VGKWCPSRREWSSPP------DVARR--VYSSVFLGSP 32
           +GKWCP RREWSSPP      D ARR  +YSSVFLGSP
Sbjct: 272 MGKWCP-RREWSSPPDARAASDAARRGVLYSSVFLGSP 308


>AY884065-1|AAX84206.1|  697|Tribolium castaneum laccase 1 protein.
          Length = 697

 Score = 20.2 bits (40), Expect = 4.0
 Identities = 8/21 (38%), Positives = 13/21 (61%)

Query: 40  LTAKSLSVMSRRNIGSHVSVA 60
           L   S  V++   +GSHV+V+
Sbjct: 536 LHGHSFRVVAMERVGSHVNVS 556


>DQ659250-1|ABG47448.1| 2700|Tribolium castaneum chitinase 10 protein.
          Length = 2700

 Score = 19.4 bits (38), Expect = 7.0
 Identities = 9/23 (39%), Positives = 14/23 (60%), Gaps = 1/23 (4%)

Query: 72   YLNVHGVGCYGYVERWN-VSGTV 93
            YL+   V CY Y  +W+ ++G V
Sbjct: 2006 YLDWIAVMCYDYHGQWDKITGHV 2028


  Database: tribolium
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 114,650
  Number of sequences in database:  317
  
Lambda     K      H
   0.319    0.132    0.416 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 23,302
Number of Sequences: 317
Number of extensions: 726
Number of successful extensions: 8
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of query: 97
length of database: 114,650
effective HSP length: 48
effective length of query: 49
effective length of database: 99,434
effective search space:  4872266
effective search space used:  4872266
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 37 (19.9 bits)
S2: 37 (19.0 bits)