Silkworm BLAST Result against arabidopsis

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000750-TA|BGIBMGA000750-PA|undefined
         (97 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g68670.1 68414.m07846 myb family transcription factor contain...    28   1.1  
At1g03270.1 68414.m00305 expressed protein contains Pfam profile...    27   2.0  
At5g61020.2 68418.m07656 YT521-B-like family protein contains Pf...    26   3.4  
At5g61020.1 68418.m07655 YT521-B-like family protein contains Pf...    26   3.4  
At1g76130.1 68414.m08841 alpha-amylase, putative / 1,4-alpha-D-g...    26   4.5  
At1g34780.1 68414.m04329 protein disulfide isomerase-related con...    25   6.0  
At5g41240.1 68418.m05011 glutathione S-transferase, putative sim...    25   7.9  
At2g31920.1 68415.m03899 expressed protein                             25   7.9  

>At1g68670.1 68414.m07846 myb family transcription factor contains
           Pfam domain, PF00249: Myb-like DNA-binding domain
          Length = 354

 Score = 27.9 bits (59), Expect = 1.1
 Identities = 18/58 (31%), Positives = 30/58 (51%), Gaps = 3/58 (5%)

Query: 4   GKWCPSRREWSSPPDVARR--VYSSVFLG-SPERYVAVLLTAKSLSVMSRRNIGSHVS 58
           G W PS +++  P DVA +  VY+ V +  SP+R +     + + S  +  N  + VS
Sbjct: 297 GIWVPSSQDFPPPSDVANKGGVYAPVAVAQSPKRSLERSCNSPAASSSTNTNTSTPVS 354


>At1g03270.1 68414.m00305 expressed protein contains Pfam profile
           PF01595: Domain of unknown function
          Length = 499

 Score = 27.1 bits (57), Expect = 2.0
 Identities = 19/67 (28%), Positives = 33/67 (49%), Gaps = 3/67 (4%)

Query: 9   SRREWSSPPDVARRVYSS--VFLGSPERYVAVLLTAKSLSVMSRRNIGSHVSVALSKYSA 66
           ++ +W +   +  R +S   V+LG+P+  + +LL  KSL  +         SV++ K   
Sbjct: 243 TKLDWETIGKILSRGHSRIPVYLGNPKNIIGLLL-VKSLLTVRAETEAPVSSVSIRKIPR 301

Query: 67  VGDDMYL 73
           V  DM L
Sbjct: 302 VPSDMPL 308


>At5g61020.2 68418.m07656 YT521-B-like family protein contains Pfam
           profile PF04146: YT521-B-like family
          Length = 493

 Score = 26.2 bits (55), Expect = 3.4
 Identities = 15/48 (31%), Positives = 23/48 (47%), Gaps = 3/48 (6%)

Query: 40  LTAKSLSVMSRRNIGSHVSVALSKYSAVGDDMYLNVHGVGCYGYVERW 87
           LT +  S  + ++ G ++    S Y   G   Y N +G G YGY + W
Sbjct: 125 LTQQGRSAGNGQSYGGYMDNIYSNYGMCGP--YTNGYGYGSYGY-DSW 169


>At5g61020.1 68418.m07655 YT521-B-like family protein contains Pfam
           profile PF04146: YT521-B-like family
          Length = 495

 Score = 26.2 bits (55), Expect = 3.4
 Identities = 15/48 (31%), Positives = 23/48 (47%), Gaps = 3/48 (6%)

Query: 40  LTAKSLSVMSRRNIGSHVSVALSKYSAVGDDMYLNVHGVGCYGYVERW 87
           LT +  S  + ++ G ++    S Y   G   Y N +G G YGY + W
Sbjct: 127 LTQQGRSAGNGQSYGGYMDNIYSNYGMCGP--YTNGYGYGSYGY-DSW 171


>At1g76130.1 68414.m08841 alpha-amylase, putative /
           1,4-alpha-D-glucan glucanohydrolase, putative strong
           similarity to alpha-amylase GI:7532799 from [Malus x
           domestica];contains Pfam profile PF00128: Alpha amylase,
           catalytic domain
          Length = 413

 Score = 25.8 bits (54), Expect = 4.5
 Identities = 7/11 (63%), Positives = 9/11 (81%)

Query: 4   GKWCPSRREWS 14
           G WCPS R+W+
Sbjct: 390 GSWCPSGRDWT 400


>At1g34780.1 68414.m04329 protein disulfide isomerase-related
           contains weak similarity to Pfam:P08003 protein
           disulfide isomerase A4 precursor (Protein ERp-72, ERp72)
           [Mus musculus]
          Length = 310

 Score = 25.4 bits (53), Expect = 6.0
 Identities = 9/27 (33%), Positives = 14/27 (51%)

Query: 1   MYVGKWCPSRREWSSPPDVARRVYSSV 27
           ++   WCP  R +    DV   +YSS+
Sbjct: 87  LFYASWCPFSRSFRPSFDVISSLYSSI 113


>At5g41240.1 68418.m05011 glutathione S-transferase, putative
           similar to glutathione S-transferase, GST 10b
           GB:CAA10662 [Arabidopsis thaliana] 37349.
          Length = 591

 Score = 25.0 bits (52), Expect = 7.9
 Identities = 17/53 (32%), Positives = 27/53 (50%), Gaps = 4/53 (7%)

Query: 10  RREWSSPPDVARRVYSSVFLGSPERYVAVLLTAKSLSVMSRRNIGSHVSVALS 62
           RR+WS P DV   +  S +L + +    V+   +      +R IG+HVS + S
Sbjct: 270 RRKWSPPDDV---ILISAWLNTSKDRKVVVYDEQQAHTFWKR-IGAHVSNSAS 318


>At2g31920.1 68415.m03899 expressed protein
          Length = 585

 Score = 25.0 bits (52), Expect = 7.9
 Identities = 12/33 (36%), Positives = 17/33 (51%)

Query: 13  WSSPPDVARRVYSSVFLGSPERYVAVLLTAKSL 45
           W   P V RR  +++ L SP     ++L  KSL
Sbjct: 165 WDQTPPVTRRRDAALLLSSPRLKSKLVLNDKSL 197


  Database: arabidopsis
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.319    0.132    0.416 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,384,450
Number of Sequences: 28952
Number of extensions: 76830
Number of successful extensions: 188
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 185
Number of HSP's gapped (non-prelim): 8
length of query: 97
length of database: 12,070,560
effective HSP length: 70
effective length of query: 27
effective length of database: 10,043,920
effective search space: 271185840
effective search space used: 271185840
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.8 bits)
S2: 52 (25.0 bits)