GeneModel BLAST Result against spombe

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000750-TA|BGIBMGA000750-PA|undefined
         (97 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC637.04 |||Cargo-transport protein Ypp1 |Schizosaccharomyces ...    25   1.6  
SPAC19G12.11 |coq9||ubiquinone biosynthesis protein Coq9 |Schizo...    23   6.4  
SPCC417.09c |||transcription factor |Schizosaccharomyces pombe|c...    23   6.4  
SPBC543.09 |||mitochondrial m-AAA protease|Schizosaccharomyces p...    23   8.4  

>SPAC637.04 |||Cargo-transport protein Ypp1 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 862

 Score = 25.4 bits (53), Expect = 1.6
 Identities = 14/60 (23%), Positives = 26/60 (43%)

Query: 36  VAVLLTAKSLSVMSRRNIGSHVSVALSKYSAVGDDMYLNVHGVGCYGYVERWNVSGTVLS 95
           VA      ++ ++   NIG      L+++  +   +Y  +    C   +ER N+  T LS
Sbjct: 167 VAYQYVRSAIGLIQNANIGKKPLPELTRWCDLAYSLYAQMSVSACSSQLERANILTTCLS 226


>SPAC19G12.11 |coq9||ubiquinone biosynthesis protein Coq9
          |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 250

 Score = 23.4 bits (48), Expect = 6.4
 Identities = 9/30 (30%), Positives = 19/30 (63%)

Query: 39 LLTAKSLSVMSRRNIGSHVSVALSKYSAVG 68
          +LT +S   ++ +N+G H  ++ +  SA+G
Sbjct: 1  MLTLRSACQLTTKNLGLHKCISKTVISALG 30


>SPCC417.09c |||transcription factor |Schizosaccharomyces
          pombe|chr 3|||Manual
          Length = 767

 Score = 23.4 bits (48), Expect = 6.4
 Identities = 8/15 (53%), Positives = 11/15 (73%)

Query: 72 YLNVHGVGCYGYVER 86
          Y+N +  GC+G VER
Sbjct: 83 YVNKYASGCFGRVER 97


>SPBC543.09 |||mitochondrial m-AAA protease|Schizosaccharomyces
          pombe|chr 2|||Manual
          Length = 773

 Score = 23.0 bits (47), Expect = 8.4
 Identities = 9/23 (39%), Positives = 16/23 (69%)

Query: 30 GSPERYVAVLLTAKSLSVMSRRN 52
          G PE++   L+++K  SV S+R+
Sbjct: 68 GIPEKHKIPLISSKQFSVTSKRS 90


  Database: spombe
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.319    0.132    0.416 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 445,484
Number of Sequences: 5004
Number of extensions: 14196
Number of successful extensions: 19
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 15
Number of HSP's gapped (non-prelim): 4
length of query: 97
length of database: 2,362,478
effective HSP length: 62
effective length of query: 35
effective length of database: 2,052,230
effective search space: 71828050
effective search space used: 71828050
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.8 bits)
S2: 47 (23.0 bits)