GeneModel BLAST Result against nematostella

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000750-TA|BGIBMGA000750-PA|undefined
         (97 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_19513| Best HMM Match : UPF0058 (HMM E-Value=5.1)                   27   1.8  
SB_26921| Best HMM Match : bZIP_1 (HMM E-Value=2.6)                    26   4.1  
SB_9812| Best HMM Match : No HMM Matches (HMM E-Value=.)               26   5.4  
SB_39888| Best HMM Match : PH (HMM E-Value=3.5e-22)                    25   7.2  
SB_26360| Best HMM Match : PKD_channel (HMM E-Value=1.3e-30)           25   9.5  

>SB_19513| Best HMM Match : UPF0058 (HMM E-Value=5.1)
          Length = 188

 Score = 27.5 bits (58), Expect = 1.8
 Identities = 14/39 (35%), Positives = 21/39 (53%)

Query: 33 ERYVAVLLTAKSLSVMSRRNIGSHVSVALSKYSAVGDDM 71
          ER+   +L+   LSV+S +    H+ VAL +     DDM
Sbjct: 55 ERHKCPVLSFNELSVLSLKPRNKHLKVALEQLKMAIDDM 93


>SB_26921| Best HMM Match : bZIP_1 (HMM E-Value=2.6)
          Length = 418

 Score = 26.2 bits (55), Expect = 4.1
 Identities = 16/52 (30%), Positives = 24/52 (46%), Gaps = 1/52 (1%)

Query: 35  YVAVLLTAKSLSVMSRRNIGSHVSVALSKYSAVGDDMYLNVHG-VGCYGYVE 85
           Y+  LL  K   V+  RN G H  +A ++      + Y  +HG +G   Y E
Sbjct: 269 YIRPLLNPKCEYVLVTRNRGQHNKLAFTRSRHRAHECYEKLHGHIGTKLYKE 320


>SB_9812| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 42

 Score = 25.8 bits (54), Expect = 5.4
 Identities = 12/27 (44%), Positives = 16/27 (59%), Gaps = 2/27 (7%)

Query: 73 LNVHGVGCYGYVER--WNVSGTVLSAP 97
          LNV+   CYGYV R  W V+ ++   P
Sbjct: 16 LNVNDKACYGYVTRGMWIVNASMTHDP 42


>SB_39888| Best HMM Match : PH (HMM E-Value=3.5e-22)
          Length = 1067

 Score = 25.4 bits (53), Expect = 7.2
 Identities = 14/35 (40%), Positives = 19/35 (54%), Gaps = 1/35 (2%)

Query: 61  LSKYSAVGDDMY-LNVHGVGCYGYVERWNVSGTVL 94
           +S  S +G  +Y L V G  C G V R  VSG ++
Sbjct: 368 VSGASCIGCVVYRLRVSGASCIGCVYRLRVSGLII 402


>SB_26360| Best HMM Match : PKD_channel (HMM E-Value=1.3e-30)
          Length = 3015

 Score = 25.0 bits (52), Expect = 9.5
 Identities = 10/31 (32%), Positives = 18/31 (58%), Gaps = 2/31 (6%)

Query: 6   WCPSRREWSSPPDVARRVYSSVFLGSPERYV 36
           W      W++ PD+  ++++S  L SP+ YV
Sbjct: 527 WDVGSSSWTTVPDLQSKIFTS--LSSPDIYV 555


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.319    0.132    0.416 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,342,700
Number of Sequences: 59808
Number of extensions: 110206
Number of successful extensions: 159
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 157
Number of HSP's gapped (non-prelim): 5
length of query: 97
length of database: 16,821,457
effective HSP length: 71
effective length of query: 26
effective length of database: 12,575,089
effective search space: 326952314
effective search space used: 326952314
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.8 bits)
S2: 52 (25.0 bits)