GeneModel BLAST Result against human

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000750-TA|BGIBMGA000750-PA|undefined
         (97 letters)

Database: human 
           224,733 sequences; 73,234,838 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

BC050463-1|AAH50463.1|  953|Homo sapiens conserved nuclear prote...    30   1.0  
BC001584-1|AAH01584.1|  718|Homo sapiens LOC124245 protein protein.    30   1.0  

>BC050463-1|AAH50463.1|  953|Homo sapiens conserved nuclear protein
           NHN1 protein.
          Length = 953

 Score = 30.3 bits (65), Expect = 1.0
 Identities = 20/66 (30%), Positives = 31/66 (46%)

Query: 10  RREWSSPPDVARRVYSSVFLGSPERYVAVLLTAKSLSVMSRRNIGSHVSVALSKYSAVGD 69
           R+E  +     RR  S    GS   Y      ++SLSV S  ++ S  S + S +S   +
Sbjct: 670 RKERPARTPPRRRTLSGSGSGSGSSYSGSSSRSRSLSVSSVSSVSSATSSSSSAHSVDSE 729

Query: 70  DMYLNV 75
           DMY ++
Sbjct: 730 DMYADL 735


>BC001584-1|AAH01584.1|  718|Homo sapiens LOC124245 protein protein.
          Length = 718

 Score = 30.3 bits (65), Expect = 1.0
 Identities = 20/66 (30%), Positives = 31/66 (46%)

Query: 10  RREWSSPPDVARRVYSSVFLGSPERYVAVLLTAKSLSVMSRRNIGSHVSVALSKYSAVGD 69
           R+E  +     RR  S    GS   Y      ++SLSV S  ++ S  S + S +S   +
Sbjct: 435 RKERPARTPPRRRTLSGSGSGSGSSYSGSSSRSRSLSVSSVSSVSSATSSSSSAHSVDSE 494

Query: 70  DMYLNV 75
           DMY ++
Sbjct: 495 DMYADL 500


  Database: human
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 73,234,838
  Number of sequences in database:  224,733
  
Lambda     K      H
   0.319    0.132    0.416 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,685,734
Number of Sequences: 224733
Number of extensions: 494577
Number of successful extensions: 669
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 667
Number of HSP's gapped (non-prelim): 2
length of query: 97
length of database: 73,234,838
effective HSP length: 74
effective length of query: 23
effective length of database: 56,604,596
effective search space: 1301905708
effective search space used: 1301905708
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.8 bits)
S2: 57 (27.1 bits)