GeneModel BLAST Result against celegans

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000750-TA|BGIBMGA000750-PA|undefined
         (97 letters)

Database: celegans 
           27,539 sequences; 12,573,161 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U00025-3|AAA50619.1|  804|Caenorhabditis elegans Hypothetical pr...    28   0.90 
AB110823-1|BAD80738.1|  804|Caenorhabditis elegans chondroitin p...    28   0.90 
U58754-7|AAB00674.1|  308|Caenorhabditis elegans Hypothetical pr...    26   3.6  
AL021483-2|CAA16345.1|  308|Caenorhabditis elegans Hypothetical ...    26   3.6  
AF047657-14|AAK18952.1|  331|Caenorhabditis elegans Serpentine r...    26   3.6  
AF026214-2|AAB71314.2|  446|Caenorhabditis elegans Hypothetical ...    26   3.6  
Z73899-3|CAA98075.1|  331|Caenorhabditis elegans Hypothetical pr...    26   4.8  
Z48245-1|CAA88290.1|  356|Caenorhabditis elegans Hypothetical pr...    25   6.3  
CU457741-2|CAM36343.1|  574|Caenorhabditis elegans Hypothetical ...    25   6.3  
AF043695-2|AAB97544.2|  574|Caenorhabditis elegans Hypothetical ...    25   6.3  

>U00025-3|AAA50619.1|  804|Caenorhabditis elegans Hypothetical
           protein PAR2.4a protein.
          Length = 804

 Score = 28.3 bits (60), Expect = 0.90
 Identities = 12/41 (29%), Positives = 23/41 (56%)

Query: 17  PDVARRVYSSVFLGSPERYVAVLLTAKSLSVMSRRNIGSHV 57
           P V R  +++  LG+ ER +A ++   +L++     +G HV
Sbjct: 90  PKVTRTRFAATELGTRERVMAAVMAESALALSINATLGRHV 130


>AB110823-1|BAD80738.1|  804|Caenorhabditis elegans chondroitin
           polymerizing factor protein.
          Length = 804

 Score = 28.3 bits (60), Expect = 0.90
 Identities = 12/41 (29%), Positives = 23/41 (56%)

Query: 17  PDVARRVYSSVFLGSPERYVAVLLTAKSLSVMSRRNIGSHV 57
           P V R  +++  LG+ ER +A ++   +L++     +G HV
Sbjct: 90  PKVTRTRFAATELGTRERVMAAVMAESALALSINATLGRHV 130


>U58754-7|AAB00674.1|  308|Caenorhabditis elegans Hypothetical
           protein C39H7.1 protein.
          Length = 308

 Score = 26.2 bits (55), Expect = 3.6
 Identities = 10/28 (35%), Positives = 17/28 (60%)

Query: 35  YVAVLLTAKSLSVMSRRNIGSHVSVALS 62
           YV + L  KSL  +++  +G H+S+  S
Sbjct: 87  YVVMTLVGKSLQDLNKAGVGGHMSMGCS 114


>AL021483-2|CAA16345.1|  308|Caenorhabditis elegans Hypothetical
           protein Y38H8A.3 protein.
          Length = 308

 Score = 26.2 bits (55), Expect = 3.6
 Identities = 10/28 (35%), Positives = 17/28 (60%)

Query: 35  YVAVLLTAKSLSVMSRRNIGSHVSVALS 62
           YV + L  KSL  +++  +G H+S+  S
Sbjct: 87  YVVMTLVGKSLQDLNKAGVGGHMSMGCS 114


>AF047657-14|AAK18952.1|  331|Caenorhabditis elegans Serpentine
           receptor, class h protein127 protein.
          Length = 331

 Score = 26.2 bits (55), Expect = 3.6
 Identities = 11/26 (42%), Positives = 17/26 (65%)

Query: 38  VLLTAKSLSVMSRRNIGSHVSVALSK 63
           + LT K L+V +RRN  S  ++AL +
Sbjct: 219 IALTVKILAVQARRNTSSQYTIALHR 244


>AF026214-2|AAB71314.2|  446|Caenorhabditis elegans Hypothetical
          protein F52H2.4 protein.
          Length = 446

 Score = 26.2 bits (55), Expect = 3.6
 Identities = 21/58 (36%), Positives = 31/58 (53%), Gaps = 3/58 (5%)

Query: 21 RRVYSSVFLGSPERYVAVLLTAKSLSVMSRRNIGSHVSVALSKYSAVGDDMYLNVHGV 78
          R V +S+F      Y +V L A SL++ S  NI   VS+ +   +AV    Y++V GV
Sbjct: 45 RFVTTSLFCVQMILYNSVALYAPSLAIASITNIPITVSILI---TAVLSAFYISVGGV 99


>Z73899-3|CAA98075.1|  331|Caenorhabditis elegans Hypothetical
           protein ZK829.5 protein.
          Length = 331

 Score = 25.8 bits (54), Expect = 4.8
 Identities = 9/27 (33%), Positives = 16/27 (59%)

Query: 12  EWSSPPDVARRVYSSVFLGSPERYVAV 38
           +++SP  +   +Y S++  SPE Y  V
Sbjct: 261 QYNSPQSIPSSIYDSLYPSSPEEYQMV 287


>Z48245-1|CAA88290.1|  356|Caenorhabditis elegans Hypothetical
           protein T27D1.3 protein.
          Length = 356

 Score = 25.4 bits (53), Expect = 6.3
 Identities = 9/21 (42%), Positives = 16/21 (76%)

Query: 33  ERYVAVLLTAKSLSVMSRRNI 53
           ERY+A++L  ++  + SRRN+
Sbjct: 117 ERYIAIVLPMQARQLCSRRNV 137


>CU457741-2|CAM36343.1|  574|Caenorhabditis elegans Hypothetical
           protein C42C1.2 protein.
          Length = 574

 Score = 25.4 bits (53), Expect = 6.3
 Identities = 12/49 (24%), Positives = 23/49 (46%)

Query: 39  LLTAKSLSVMSRRNIGSHVSVALSKYSAVGDDMYLNVHGVGCYGYVERW 87
           +L+ +   ++ R  +GS  S   S+Y+    D+     G    G ++RW
Sbjct: 484 VLSNEDAGLIVRSTLGSTDSADPSRYTQAAQDLVAAARGQQASGNLKRW 532


>AF043695-2|AAB97544.2|  574|Caenorhabditis elegans Hypothetical
           protein C42C1.2 protein.
          Length = 574

 Score = 25.4 bits (53), Expect = 6.3
 Identities = 12/49 (24%), Positives = 23/49 (46%)

Query: 39  LLTAKSLSVMSRRNIGSHVSVALSKYSAVGDDMYLNVHGVGCYGYVERW 87
           +L+ +   ++ R  +GS  S   S+Y+    D+     G    G ++RW
Sbjct: 484 VLSNEDAGLIVRSTLGSTDSADPSRYTQAAQDLVAAARGQQASGNLKRW 532


  Database: celegans
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 12,573,161
  Number of sequences in database:  27,539
  
Lambda     K      H
   0.319    0.132    0.416 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,384,282
Number of Sequences: 27539
Number of extensions: 75092
Number of successful extensions: 122
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 113
Number of HSP's gapped (non-prelim): 10
length of query: 97
length of database: 12,573,161
effective HSP length: 70
effective length of query: 27
effective length of database: 10,645,431
effective search space: 287426637
effective search space used: 287426637
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.8 bits)
S2: 52 (25.0 bits)