Silkworm BLAST Result against tribolium

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000749-TA|BGIBMGA000749-PA|undefined
         (104 letters)

Database: tribolium 
           317 sequences; 114,650 total letters

Searching....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY884064-1|AAX84205.1|  683|Tribolium castaneum pro-phenol oxida...    22   1.1  
AY600513-1|AAT11861.1|  314|Tribolium castaneum spalt-like prote...    21   2.6  
AY600514-1|AAT11862.1|  242|Tribolium castaneum iroquois-like pr...    19   7.9  

>AY884064-1|AAX84205.1|  683|Tribolium castaneum pro-phenol oxidase
           subunit 2 protein.
          Length = 683

 Score = 22.2 bits (45), Expect = 1.1
 Identities = 10/20 (50%), Positives = 13/20 (65%)

Query: 56  VRPFLNKNIRVADVTDKVYD 75
           ++ FL  N+RV DVT K  D
Sbjct: 655 LQQFLTPNMRVQDVTIKFSD 674


>AY600513-1|AAT11861.1|  314|Tribolium castaneum spalt-like protein
           protein.
          Length = 314

 Score = 21.0 bits (42), Expect = 2.6
 Identities = 6/18 (33%), Positives = 14/18 (77%)

Query: 82  VEDDESDTDNVTNSVEED 99
           ++DD+ D D+++NS  ++
Sbjct: 287 MDDDDDDDDDMSNSENQN 304


>AY600514-1|AAT11862.1|  242|Tribolium castaneum iroquois-like
           protein protein.
          Length = 242

 Score = 19.4 bits (38), Expect = 7.9
 Identities = 8/29 (27%), Positives = 16/29 (55%)

Query: 76  DLNDLIVEDDESDTDNVTNSVEEDTGDNY 104
           DL+D  + DD+   D + N++    G+ +
Sbjct: 195 DLDDDDMNDDDRKDDLLGNNMHHILGNTF 223


  Database: tribolium
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 114,650
  Number of sequences in database:  317
  
Lambda     K      H
   0.314    0.137    0.374 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,951
Number of Sequences: 317
Number of extensions: 647
Number of successful extensions: 3
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3
length of query: 104
length of database: 114,650
effective HSP length: 49
effective length of query: 55
effective length of database: 99,117
effective search space:  5451435
effective search space used:  5451435
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 38 (20.1 bits)
S2: 38 (19.4 bits)