Silkworm BLAST Result against bee

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000749-TA|BGIBMGA000749-PA|undefined
         (104 letters)

Database: bee 
           429 sequences; 140,377 total letters

Searching.....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precurso...    25   0.25 
DQ342041-1|ABC69933.1|  828|Apis mellifera STIP protein.               21   2.3  
AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor pr...    21   2.3  
AY921573-1|AAX62923.1|  694|Apis mellifera D2-like dopamine rece...    20   7.2  

>AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precursor
            protein.
          Length = 1770

 Score = 24.6 bits (51), Expect = 0.25
 Identities = 16/52 (30%), Positives = 28/52 (53%), Gaps = 3/52 (5%)

Query: 51   KTKIEVRPFLNKNIRVADV---TDKVYDDLNDLIVEDDESDTDNVTNSVEED 99
            K KI+VR  LN+ +  ADV   T  +     D+ + D    T+++ ++ +ED
Sbjct: 1379 KKKIDVRAKLNEYLDKADVIVNTPIMDAHFKDVKLSDFGFSTEDILDTADED 1430


>DQ342041-1|ABC69933.1|  828|Apis mellifera STIP protein.
          Length = 828

 Score = 21.4 bits (43), Expect = 2.3
 Identities = 7/15 (46%), Positives = 11/15 (73%)

Query: 83  EDDESDTDNVTNSVE 97
           +DDESD +N+ +  E
Sbjct: 89  DDDESDNENIKSQKE 103


>AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor
           protein.
          Length = 1370

 Score = 21.4 bits (43), Expect = 2.3
 Identities = 9/38 (23%), Positives = 21/38 (55%)

Query: 63  NIRVADVTDKVYDDLNDLIVEDDESDTDNVTNSVEEDT 100
           N++  ++T+    D+ND+ +   +SD  +  N  +E +
Sbjct: 172 NLQTLNLTENRLRDINDIGLNRRDSDDGSDGNDGDESS 209


>AY921573-1|AAX62923.1|  694|Apis mellifera D2-like dopamine
           receptor protein.
          Length = 694

 Score = 19.8 bits (39), Expect = 7.2
 Identities = 10/21 (47%), Positives = 13/21 (61%)

Query: 73  VYDDLNDLIVEDDESDTDNVT 93
           V+DDLND I   + S   N+T
Sbjct: 121 VFDDLNDYINRLNYSAFVNLT 141


  Database: bee
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 140,377
  Number of sequences in database:  429
  
Lambda     K      H
   0.314    0.137    0.374 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 24,333
Number of Sequences: 429
Number of extensions: 732
Number of successful extensions: 4
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of query: 104
length of database: 140,377
effective HSP length: 49
effective length of query: 55
effective length of database: 119,356
effective search space:  6564580
effective search space used:  6564580
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 38 (20.1 bits)
S2: 38 (19.4 bits)