Silkworm BLAST Result against spombe

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000748-TA|BGIBMGA000748-PA|IPR000109|TGF-beta receptor,
type I/II extracellular region
         (504 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC13A2.04c |||PTR family peptide transporter|Schizosaccharomyc...    34   0.040
SPBC146.03c |cut3|smc4, smc4|condensin subunit Cut3|Schizosaccha...    28   3.5  
SPCC63.04 |mok14||alpha-1,3-glucan synthase Mok14|Schizosaccharo...    28   3.5  
SPAC26A3.06 |||methyltransferase |Schizosaccharomyces pombe|chr ...    27   4.6  
SPAC23C4.18c |rad4|cut5, dre3|BRCT domain protein Rad4|Schizosac...    27   4.6  
SPAC17G6.09 |sec62||ER protein translocation subcomplex subunit ...    27   4.6  
SPAC4D7.01c |sec71|sec7a, SPAP8A3.15c|Sec7 domain|Schizosaccharo...    27   6.1  

>SPBC13A2.04c |||PTR family peptide transporter|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 618

 Score = 34.3 bits (75), Expect = 0.040
 Identities = 13/28 (46%), Positives = 23/28 (82%), Gaps = 1/28 (3%)

Query: 475 WI-VPQYLLVSVAEIMFAVSGLEFSFTQ 501
           WI +P Y+L++ +EI  +++GLEF+FT+
Sbjct: 476 WIQIPAYVLIAFSEIFASITGLEFAFTK 503


>SPBC146.03c |cut3|smc4, smc4|condensin subunit
            Cut3|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1324

 Score = 27.9 bits (59), Expect = 3.5
 Identities = 13/39 (33%), Positives = 22/39 (56%), Gaps = 1/39 (2%)

Query: 130  LPPVDHWLDYSIEKYGPKLVADMKVVFAILYLYLPVPIF 168
            +PP   W + S    G K ++ + +VFA L+ Y P P++
Sbjct: 1218 MPPKKSWKNISNLSGGEKTLSSLALVFA-LHNYKPTPLY 1255


>SPCC63.04 |mok14||alpha-1,3-glucan synthase Mok14|Schizosaccharomyces
            pombe|chr 3|||Manual
          Length = 1369

 Score = 27.9 bits (59), Expect = 3.5
 Identities = 11/34 (32%), Positives = 20/34 (58%)

Query: 220  WPVFPNLPPLHKMFIGGMLAALAFVSAGILQIGI 253
            W ++ NLP +H + +   + ALAF+  GI  + +
Sbjct: 992  WGLYRNLPSVHSLSLPFAVYALAFLFTGISSMSL 1025


>SPAC26A3.06 |||methyltransferase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 268

 Score = 27.5 bits (58), Expect = 4.6
 Identities = 17/45 (37%), Positives = 20/45 (44%), Gaps = 1/45 (2%)

Query: 33  QRLQRFFSTFYCTVNLGGFMGMIVTPALRKSVMCFGDDTCYALGF 77
           +RL RFF T Y ++  GG   M   P   KS      DT    GF
Sbjct: 135 RRLNRFFQTLYISMKRGGRAVMQYYPETEKSQQMI-MDTARKAGF 178


>SPAC23C4.18c |rad4|cut5, dre3|BRCT domain protein
           Rad4|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 648

 Score = 27.5 bits (58), Expect = 4.6
 Identities = 13/51 (25%), Positives = 26/51 (50%)

Query: 387 AVETEKRLSDIYYVSDAPVDQIGESAYMCLQPGKFKWRASSAGDEVSGSGE 437
           +++    L   Y+  D P ++IG  AY+ L P   + ++ S   ++S + E
Sbjct: 171 SIQRNAVLEPQYFQLDMPAEKIGLGAYVRLDPNTTEAKSYSENQKISKNKE 221


>SPAC17G6.09 |sec62||ER protein translocation subcomplex subunit
           Sec62 |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 273

 Score = 27.5 bits (58), Expect = 4.6
 Identities = 21/81 (25%), Positives = 39/81 (48%), Gaps = 7/81 (8%)

Query: 146 PKLVADMKVVFAILYLYLPVPIFWSLFDQQGSRWTFQASRLRSEIFGITLMPDQLQVMNP 205
           PK V  + V+FA++ L L +   W +F ++G+ W      L   + G+  +   L ++  
Sbjct: 130 PKRVMALAVLFALVVLALVLFPLWPMFMRKGA-WYLSMGGL--GVIGLFFV---LVILRF 183

Query: 206 AMVLFMMPVCPGGVWPVFPNL 226
            +      +   G+W +FPNL
Sbjct: 184 FLFCITAVIVRPGIW-LFPNL 203


>SPAC4D7.01c |sec71|sec7a, SPAP8A3.15c|Sec7
           domain|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1811

 Score = 27.1 bits (57), Expect = 6.1
 Identities = 17/49 (34%), Positives = 23/49 (46%), Gaps = 3/49 (6%)

Query: 25  QFRLPEENQRLQRF---FSTFYCTVNLGGFMGMIVTPALRKSVMCFGDD 70
           +FRLP E Q++ RF   F+  Y   NLG F        L  S++    D
Sbjct: 789 KFRLPGEAQKIDRFMLKFAEKYIDDNLGVFKNADTAYILAYSIIMLNTD 837


  Database: spombe
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.325    0.140    0.441 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,275,787
Number of Sequences: 5004
Number of extensions: 96313
Number of successful extensions: 234
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 229
Number of HSP's gapped (non-prelim): 8
length of query: 504
length of database: 2,362,478
effective HSP length: 76
effective length of query: 428
effective length of database: 1,982,174
effective search space: 848370472
effective search space used: 848370472
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.6 bits)
S2: 56 (26.6 bits)