GeneModel BLAST Result against mosquito

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000748-TA|BGIBMGA000748-PA|IPR000109|TGF-beta receptor,
type I/II extracellular region
         (504 letters)

Database: mosquito 
           2123 sequences; 516,269 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY193729-1|AAO62002.1|  499|Anopheles gambiae cytochrome P450 CY...    27   1.2  
AJ535206-1|CAD59406.1| 1376|Anopheles gambiae SMC4 protein protein.    26   2.7  

>AY193729-1|AAO62002.1|  499|Anopheles gambiae cytochrome P450
           CYPm3r9 protein.
          Length = 499

 Score = 27.1 bits (57), Expect = 1.2
 Identities = 14/37 (37%), Positives = 22/37 (59%), Gaps = 6/37 (16%)

Query: 275 PCPVHVTIRGE-----GVASVEQQGTALMMPLQHRVH 306
           P PVH+ +  +     G  SV + GTA+M+P+ H +H
Sbjct: 369 PVPVHLRVASKDYHVPGTKSVLEAGTAVMIPV-HAIH 404


>AJ535206-1|CAD59406.1| 1376|Anopheles gambiae SMC4 protein protein.
          Length = 1376

 Score = 25.8 bits (54), Expect = 2.7
 Identities = 13/38 (34%), Positives = 20/38 (52%), Gaps = 1/38 (2%)

Query: 131  PPVDHWLDYSIEKYGPKLVADMKVVFAILYLYLPVPIF 168
            PP   W   S    G K ++ + +VFA+ Y Y P P++
Sbjct: 1176 PPKKSWKMISNLSGGEKTLSSLALVFALHY-YKPSPLY 1212


  Database: mosquito
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 516,269
  Number of sequences in database:  2123
  
Lambda     K      H
   0.325    0.140    0.441 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 534,982
Number of Sequences: 2123
Number of extensions: 22720
Number of successful extensions: 27
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 0
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 27
Number of HSP's gapped (non-prelim): 2
length of query: 504
length of database: 516,269
effective HSP length: 67
effective length of query: 437
effective length of database: 374,028
effective search space: 163450236
effective search space used: 163450236
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.6 bits)
S2: 50 (24.2 bits)