Silkworm BLAST Result against tribolium

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000747-TA|BGIBMGA000747-PA|undefined
         (72 letters)

Database: tribolium 
           317 sequences; 114,650 total letters

Searching....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ659250-1|ABG47448.1| 2700|Tribolium castaneum chitinase 10 pro...    19   5.2  
AY675073-1|AAV74190.1|  533|Tribolium castaneum chitinase 5 prot...    19   5.2  
AY453651-1|AAR89057.1|  199|Tribolium castaneum serrate protein.       19   6.8  
AY295880-2|AAQ62694.1| 1558|Tribolium castaneum chitin synthase ...    19   6.8  
AY295880-1|AAQ62693.1| 1558|Tribolium castaneum chitin synthase ...    19   6.8  
AY291476-1|AAQ55060.1| 1558|Tribolium castaneum chitin synthase ...    19   6.8  
AY291475-1|AAQ55059.1| 1558|Tribolium castaneum chitin synthase ...    19   6.8  

>DQ659250-1|ABG47448.1| 2700|Tribolium castaneum chitinase 10
           protein.
          Length = 2700

 Score = 19.0 bits (37), Expect = 5.2
 Identities = 7/18 (38%), Positives = 11/18 (61%)

Query: 34  NKVWVRKWIDRSDKLGAT 51
           N++  ++WI   D  GAT
Sbjct: 911 NRIRNQRWIVNRDTSGAT 928


>AY675073-1|AAV74190.1|  533|Tribolium castaneum chitinase 5
           protein.
          Length = 533

 Score = 19.0 bits (37), Expect = 5.2
 Identities = 4/12 (33%), Positives = 8/12 (66%)

Query: 30  VIKKNKVWVRKW 41
           ++ K+  W +KW
Sbjct: 316 ILNKDSGWTKKW 327


>AY453651-1|AAR89057.1|  199|Tribolium castaneum serrate protein.
          Length = 199

 Score = 18.6 bits (36), Expect = 6.8
 Identities = 6/12 (50%), Positives = 9/12 (75%)

Query: 46 DKLGATKCLLKE 57
          DK+ A +C+ KE
Sbjct: 85 DKINAFQCICKE 96


>AY295880-2|AAQ62694.1| 1558|Tribolium castaneum chitin synthase
           variant 2 protein.
          Length = 1558

 Score = 18.6 bits (36), Expect = 6.8
 Identities = 7/19 (36%), Positives = 12/19 (63%)

Query: 8   RVNKLIKLIVMAILEEVDE 26
           +VN+ +KL+V  I E   +
Sbjct: 632 QVNRFVKLLVATIDEAASD 650


>AY295880-1|AAQ62693.1| 1558|Tribolium castaneum chitin synthase
           variant 1 protein.
          Length = 1558

 Score = 18.6 bits (36), Expect = 6.8
 Identities = 7/19 (36%), Positives = 12/19 (63%)

Query: 8   RVNKLIKLIVMAILEEVDE 26
           +VN+ +KL+V  I E   +
Sbjct: 632 QVNRFVKLLVATIDEAASD 650


>AY291476-1|AAQ55060.1| 1558|Tribolium castaneum chitin synthase
           CHS1B protein.
          Length = 1558

 Score = 18.6 bits (36), Expect = 6.8
 Identities = 7/19 (36%), Positives = 12/19 (63%)

Query: 8   RVNKLIKLIVMAILEEVDE 26
           +VN+ +KL+V  I E   +
Sbjct: 632 QVNRFVKLLVATIDEAASD 650


>AY291475-1|AAQ55059.1| 1558|Tribolium castaneum chitin synthase
           CHS1A protein.
          Length = 1558

 Score = 18.6 bits (36), Expect = 6.8
 Identities = 7/19 (36%), Positives = 12/19 (63%)

Query: 8   RVNKLIKLIVMAILEEVDE 26
           +VN+ +KL+V  I E   +
Sbjct: 632 QVNRFVKLLVATIDEAASD 650


  Database: tribolium
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 114,650
  Number of sequences in database:  317
  
Lambda     K      H
   0.318    0.134    0.374 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,925
Number of Sequences: 317
Number of extensions: 538
Number of successful extensions: 7
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of query: 72
length of database: 114,650
effective HSP length: 45
effective length of query: 27
effective length of database: 100,385
effective search space:  2710395
effective search space used:  2710395
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 35 (18.9 bits)
S2: 35 (18.2 bits)