Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA000747-TA|BGIBMGA000747-PA|undefined
(72 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_37754| Best HMM Match : HTH_5 (HMM E-Value=9.4) 36 0.004
SB_14232| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 0.41
SB_39508| Best HMM Match : F5_F8_type_C (HMM E-Value=0) 29 0.72
SB_37680| Best HMM Match : 7tm_1 (HMM E-Value=5.4e-14) 27 1.7
SB_771| Best HMM Match : Pox_A_type_inc (HMM E-Value=0.27) 27 1.7
SB_47948| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 2.2
SB_20042| Best HMM Match : RYDR_ITPR (HMM E-Value=0) 26 3.8
SB_13311| Best HMM Match : No HMM Matches (HMM E-Value=.) 26 3.8
SB_57598| Best HMM Match : No HMM Matches (HMM E-Value=.) 25 6.7
SB_12449| Best HMM Match : No HMM Matches (HMM E-Value=.) 25 6.7
SB_36390| Best HMM Match : No HMM Matches (HMM E-Value=.) 25 8.8
>SB_37754| Best HMM Match : HTH_5 (HMM E-Value=9.4)
Length = 450
Score = 36.3 bits (80), Expect = 0.004
Identities = 17/43 (39%), Positives = 27/43 (62%), Gaps = 2/43 (4%)
Query: 15 LIVMAILEEVDEETSVIKKNKVWVRKWIDRSDKLGATKCLLKE 57
LI+M +L+ D+ V + +VW R+WI R ++LGA L +E
Sbjct: 15 LILMQLLD--DDNPPVTIERRVWTREWIKRREELGAFHTLFRE 55
>SB_14232| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 121
Score = 29.5 bits (63), Expect = 0.41
Identities = 13/34 (38%), Positives = 22/34 (64%), Gaps = 2/34 (5%)
Query: 15 LIVMAILEEVDEETSVIKKNKVWVRKWIDRSDKL 48
LI+M +L+ D+ V + +VW R+WI R ++L
Sbjct: 15 LILMQLLD--DDNPPVTIERRVWTREWIKRREEL 46
>SB_39508| Best HMM Match : F5_F8_type_C (HMM E-Value=0)
Length = 1814
Score = 28.7 bits (61), Expect = 0.72
Identities = 15/31 (48%), Positives = 20/31 (64%), Gaps = 3/31 (9%)
Query: 18 MAILEEVDEETSVIKKNKVWVRKWIDRSDKL 48
MA +EE++ S IKKN++ KW SDKL
Sbjct: 1459 MADMEELENFLSTIKKNQL---KWCGNSDKL 1486
>SB_37680| Best HMM Match : 7tm_1 (HMM E-Value=5.4e-14)
Length = 457
Score = 27.5 bits (58), Expect = 1.7
Identities = 17/46 (36%), Positives = 26/46 (56%), Gaps = 4/46 (8%)
Query: 15 LIVMAILEEVDEETSVIKKNKVW--VRKWIDRSDKLGATKCLLKEL 58
++++A+L +DE IKK + R WI R + GA LLKE+
Sbjct: 14 VVLLALL--LDESPEKIKKRRKQESTRLWIARREDRGACHMLLKEI 57
>SB_771| Best HMM Match : Pox_A_type_inc (HMM E-Value=0.27)
Length = 506
Score = 27.5 bits (58), Expect = 1.7
Identities = 21/70 (30%), Positives = 36/70 (51%), Gaps = 2/70 (2%)
Query: 1 MNRLQRNRVNKLIKLIVMAIL--EEVDEETSVIKKNKVWVRKWIDRSDKLGATKCLLKEL 58
M R+ R + L K + L E+VD E ++ ++ ++ V + R D+L A K +L+E
Sbjct: 346 MRRIDRLEADVLAKQTSLEQLRKEKVDLENTLEQEQELLVNRLWKRMDRLEAEKRMLQEK 405
Query: 59 ALEEIPKNTS 68
E I + S
Sbjct: 406 LEEPISEPPS 415
>SB_47948| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 641
Score = 27.1 bits (57), Expect = 2.2
Identities = 9/13 (69%), Positives = 10/13 (76%)
Query: 37 WVRKWIDRSDKLG 49
WV KW+D SDK G
Sbjct: 429 WVSKWVDYSDKYG 441
>SB_20042| Best HMM Match : RYDR_ITPR (HMM E-Value=0)
Length = 340
Score = 26.2 bits (55), Expect = 3.8
Identities = 11/33 (33%), Positives = 22/33 (66%), Gaps = 2/33 (6%)
Query: 20 ILEEVDEETSVIKKNKVWVRKWIDRSDKLGATK 52
I ++DE +++K+++WV K + D +G+TK
Sbjct: 91 IRSDLDELRLLVEKSELWVYK--SKKDSIGSTK 121
>SB_13311| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 6406
Score = 26.2 bits (55), Expect = 3.8
Identities = 12/42 (28%), Positives = 23/42 (54%)
Query: 17 VMAILEEVDEETSVIKKNKVWVRKWIDRSDKLGATKCLLKEL 58
V+ +E+ DE+ +++KK + + +W DK LLK +
Sbjct: 1535 VLESVEQGDEQKALVKKLEDLIDRWNRAKDKASERNGLLKSV 1576
>SB_57598| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 165
Score = 25.4 bits (53), Expect = 6.7
Identities = 10/35 (28%), Positives = 20/35 (57%), Gaps = 1/35 (2%)
Query: 32 KKNKVWVRKWIDRSDKLGATKCLLKELALEEIPKN 66
+K +W ++W+ R A + + +L LE+ P+N
Sbjct: 25 RKRTIWEKEWLKRRINFSAYRQIATKLQLED-PEN 58
>SB_12449| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 661
Score = 25.4 bits (53), Expect = 6.7
Identities = 15/54 (27%), Positives = 26/54 (48%)
Query: 4 LQRNRVNKLIKLIVMAILEEVDEETSVIKKNKVWVRKWIDRSDKLGATKCLLKE 57
L ++ V KLIKL V +L+ +K + + RSD L + +L++
Sbjct: 54 LTKDDVQKLIKLCVARLLDSNSPALDTVKMQVYFDMNYTSRSDFLEEHRRVLEQ 107
>SB_36390| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 391
Score = 25.0 bits (52), Expect = 8.8
Identities = 10/27 (37%), Positives = 18/27 (66%)
Query: 43 DRSDKLGATKCLLKELALEEIPKNTSI 69
+R+ K A + +L ++EE+PK TS+
Sbjct: 57 NRTTKFDAREKILSNRSVEELPKKTSL 83
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.374
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,154,001
Number of Sequences: 59808
Number of extensions: 64781
Number of successful extensions: 192
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 183
Number of HSP's gapped (non-prelim): 12
length of query: 72
length of database: 16,821,457
effective HSP length: 50
effective length of query: 22
effective length of database: 13,831,057
effective search space: 304283254
effective search space used: 304283254
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
S2: 52 (25.0 bits)
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