GeneModel BLAST Result against celegans

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000747-TA|BGIBMGA000747-PA|undefined
         (72 letters)

Database: celegans 
           27,539 sequences; 12,573,161 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z46934-1|CAA87039.1|  226|Caenorhabditis elegans Hypothetical pr...    29   0.52 
U13071-4|AAA20671.1|  510|Caenorhabditis elegans Hypothetical pr...    29   0.52 
L15188-2|AAA27947.2|  648|Caenorhabditis elegans Polo kinase pro...    27   2.1  
L15188-1|AAM22025.1|  649|Caenorhabditis elegans Polo kinase pro...    27   2.1  
AF194964-1|AAF28314.1|  632|Caenorhabditis elegans polo-like kin...    27   2.1  
AF080581-1|AAC34661.1|  648|Caenorhabditis elegans polo-like kin...    27   2.1  
AF057165-1|AAC14129.1|  649|Caenorhabditis elegans putative seri...    27   2.1  
AC024201-9|AAF36014.1|  632|Caenorhabditis elegans Polo kinase p...    27   2.1  
AC006684-11|AAF39968.1|  550|Caenorhabditis elegans Hypothetical...    27   2.1  
U00058-2|AAL02528.2|  832|Caenorhabditis elegans Hypothetical pr...    26   3.7  
AF003130-4|AAB54126.1| 1043|Caenorhabditis elegans Hypothetical ...    26   3.7  
U58757-4|AAC47922.3|  580|Caenorhabditis elegans Hypothetical pr...    25   4.9  
Z92781-5|CAB07179.2| 1391|Caenorhabditis elegans Hypothetical pr...    25   6.5  
Z81453-3|CAB03791.1|  480|Caenorhabditis elegans Hypothetical pr...    25   6.5  
Z68159-11|CAI79134.1|  117|Caenorhabditis elegans Hypothetical p...    25   6.5  
AF067215-1|AAC17011.1|  495|Caenorhabditis elegans Hypothetical ...    25   6.5  
Z50872-2|CAA90755.1|  273|Caenorhabditis elegans Hypothetical pr...    25   8.5  
U21322-3|AAA62541.1| 1425|Caenorhabditis elegans Hypothetical pr...    25   8.5  
AF022985-13|AAB69968.1|  375|Caenorhabditis elegans Hypothetical...    25   8.5  

>Z46934-1|CAA87039.1|  226|Caenorhabditis elegans Hypothetical
           protein ZK1320.1 protein.
          Length = 226

 Score = 28.7 bits (61), Expect = 0.52
 Identities = 12/32 (37%), Positives = 21/32 (65%), Gaps = 1/32 (3%)

Query: 17  VMAILEEVDEETSVIKKNKVWVRKWIDRSDKL 48
           V+ +L+E D+E  +    ++WVR W  RS+K+
Sbjct: 102 VLLVLQEQDKELMLRAAREMWVRLW-SRSEKI 132


>U13071-4|AAA20671.1|  510|Caenorhabditis elegans Hypothetical
           protein T22F7.1 protein.
          Length = 510

 Score = 28.7 bits (61), Expect = 0.52
 Identities = 16/43 (37%), Positives = 24/43 (55%), Gaps = 1/43 (2%)

Query: 10  NKLIKLIVMAILEEVDEETSVIKKNKVWVRKWIDRSDKLGATK 52
           N L+ + +M  L E     S+ KKN+  V+KWI R++ L   K
Sbjct: 253 NILVAVFLMGTLPE-SVGYSIEKKNRKAVQKWIKRNELLSCKK 294


>L15188-2|AAA27947.2|  648|Caenorhabditis elegans Polo kinase
           protein 1, isoform a protein.
          Length = 648

 Score = 26.6 bits (56), Expect = 2.1
 Identities = 8/13 (61%), Positives = 10/13 (76%)

Query: 37  WVRKWIDRSDKLG 49
           W+ KW+D SDK G
Sbjct: 412 WISKWVDYSDKYG 424


>L15188-1|AAM22025.1|  649|Caenorhabditis elegans Polo kinase
           protein 1, isoform b protein.
          Length = 649

 Score = 26.6 bits (56), Expect = 2.1
 Identities = 8/13 (61%), Positives = 10/13 (76%)

Query: 37  WVRKWIDRSDKLG 49
           W+ KW+D SDK G
Sbjct: 413 WISKWVDYSDKYG 425


>AF194964-1|AAF28314.1|  632|Caenorhabditis elegans polo-like kinase
           2 protein.
          Length = 632

 Score = 26.6 bits (56), Expect = 2.1
 Identities = 8/13 (61%), Positives = 10/13 (76%)

Query: 37  WVRKWIDRSDKLG 49
           W+ KW+D SDK G
Sbjct: 405 WISKWVDYSDKYG 417


>AF080581-1|AAC34661.1|  648|Caenorhabditis elegans polo-like
           kinase-1 protein.
          Length = 648

 Score = 26.6 bits (56), Expect = 2.1
 Identities = 8/13 (61%), Positives = 10/13 (76%)

Query: 37  WVRKWIDRSDKLG 49
           W+ KW+D SDK G
Sbjct: 412 WISKWVDYSDKYG 424


>AF057165-1|AAC14129.1|  649|Caenorhabditis elegans putative
           serine/threonine proteinkinase protein.
          Length = 649

 Score = 26.6 bits (56), Expect = 2.1
 Identities = 8/13 (61%), Positives = 10/13 (76%)

Query: 37  WVRKWIDRSDKLG 49
           W+ KW+D SDK G
Sbjct: 413 WISKWVDYSDKYG 425


>AC024201-9|AAF36014.1|  632|Caenorhabditis elegans Polo kinase
           protein 2 protein.
          Length = 632

 Score = 26.6 bits (56), Expect = 2.1
 Identities = 8/13 (61%), Positives = 10/13 (76%)

Query: 37  WVRKWIDRSDKLG 49
           W+ KW+D SDK G
Sbjct: 405 WISKWVDYSDKYG 417


>AC006684-11|AAF39968.1|  550|Caenorhabditis elegans Hypothetical
           protein T02H6.1a protein.
          Length = 550

 Score = 26.6 bits (56), Expect = 2.1
 Identities = 10/33 (30%), Positives = 19/33 (57%)

Query: 16  IVMAILEEVDEETSVIKKNKVWVRKWIDRSDKL 48
           +++ ++EE +   ++ KK K W + W  R  KL
Sbjct: 477 LLLVVVEESNRVMNLKKKKKSWRKSWKRRKKKL 509


>U00058-2|AAL02528.2|  832|Caenorhabditis elegans Hypothetical
           protein W03A5.1 protein.
          Length = 832

 Score = 25.8 bits (54), Expect = 3.7
 Identities = 11/29 (37%), Positives = 19/29 (65%)

Query: 30  VIKKNKVWVRKWIDRSDKLGATKCLLKEL 58
           ++KK+ V+++K+I +   LG  K  L EL
Sbjct: 659 LLKKHPVYIKKYICKITDLGLAKTCLDEL 687


>AF003130-4|AAB54126.1| 1043|Caenorhabditis elegans Hypothetical
           protein F55A12.8 protein.
          Length = 1043

 Score = 25.8 bits (54), Expect = 3.7
 Identities = 14/36 (38%), Positives = 19/36 (52%)

Query: 21  LEEVDEETSVIKKNKVWVRKWIDRSDKLGATKCLLK 56
           L E+  E S+  K    + KW++R   L AT C LK
Sbjct: 452 LHEMHMEESIRYKPGDKIEKWLNRLLCLDATNCQLK 487


>U58757-4|AAC47922.3|  580|Caenorhabditis elegans Hypothetical
           protein C01B10.4 protein.
          Length = 580

 Score = 25.4 bits (53), Expect = 4.9
 Identities = 9/28 (32%), Positives = 19/28 (67%)

Query: 37  WVRKWIDRSDKLGATKCLLKELALEEIP 64
           W+++ I+   K+  TK  LK+++L+ +P
Sbjct: 495 WLKEMIEFDQKVTETKKKLKQISLKTVP 522


>Z92781-5|CAB07179.2| 1391|Caenorhabditis elegans Hypothetical
           protein F09C3.1 protein.
          Length = 1391

 Score = 25.0 bits (52), Expect = 6.5
 Identities = 11/31 (35%), Positives = 21/31 (67%)

Query: 21  LEEVDEETSVIKKNKVWVRKWIDRSDKLGAT 51
           LEE+DE+  ++ KN++ +++ I   DK  A+
Sbjct: 713 LEEMDEKIGLLIKNRLNLQEVIAHRDKTAAS 743


>Z81453-3|CAB03791.1|  480|Caenorhabditis elegans Hypothetical
           protein B0250.4 protein.
          Length = 480

 Score = 25.0 bits (52), Expect = 6.5
 Identities = 11/37 (29%), Positives = 21/37 (56%), Gaps = 1/37 (2%)

Query: 33  KNKVWVRKWIDRSDKLGATKCLLKELALEEIPKNTSI 69
           + ++W  + +D SD  G  +CL KE   ++I K  ++
Sbjct: 142 REQLWKHRSLDHSDFYGKLECLNKE-EYKDINKTNTV 177


>Z68159-11|CAI79134.1|  117|Caenorhabditis elegans Hypothetical
           protein C33D9.10 protein.
          Length = 117

 Score = 25.0 bits (52), Expect = 6.5
 Identities = 9/34 (26%), Positives = 19/34 (55%)

Query: 11  KLIKLIVMAILEEVDEETSVIKKNKVWVRKWIDR 44
           +L+   +MA +E++D+      K   W++K  +R
Sbjct: 75  RLLNRTMMARVEQIDKNEEANAKKSYWIQKLANR 108


>AF067215-1|AAC17011.1|  495|Caenorhabditis elegans Hypothetical
           protein ZK380.2 protein.
          Length = 495

 Score = 25.0 bits (52), Expect = 6.5
 Identities = 7/30 (23%), Positives = 19/30 (63%)

Query: 18  MAILEEVDEETSVIKKNKVWVRKWIDRSDK 47
           +++L+E+D+E  +++KN  +    +   D+
Sbjct: 176 VSLLQEIDKEIEILEKNSAFEESLLQEKDE 205


>Z50872-2|CAA90755.1|  273|Caenorhabditis elegans Hypothetical
           protein C05D12.4 protein.
          Length = 273

 Score = 24.6 bits (51), Expect = 8.5
 Identities = 16/49 (32%), Positives = 27/49 (55%), Gaps = 1/49 (2%)

Query: 11  KLIKLIVMAILEEVDEETSVIKKNKVWVRKW-IDRSDKLGATKCLLKEL 58
           K +K++  A  E+V+E   VIK  K  + K  I R++     K L+K++
Sbjct: 109 KKVKVLEDAFDEKVEENNEVIKNQKESIDKMRISRTETSEEHKELVKKI 157


>U21322-3|AAA62541.1| 1425|Caenorhabditis elegans Hypothetical
           protein K10D2.3 protein.
          Length = 1425

 Score = 24.6 bits (51), Expect = 8.5
 Identities = 15/63 (23%), Positives = 32/63 (50%), Gaps = 2/63 (3%)

Query: 7   NRVNKLIKLIVMAILEEVDEETSVIKKNKVWVRKWIDRSDKLGATKCLLKELALEEIPKN 66
           NR  K   +I+     E+DE+T     N   + + ++ + K+ + K +  ++A+  +P +
Sbjct: 788 NRWKKANVIILSEDSSEIDEKTKAADSNVSEIAEKLEETLKISSQKNI--DVAVTSMPVS 845

Query: 67  TSI 69
           T I
Sbjct: 846 TEI 848


>AF022985-13|AAB69968.1|  375|Caenorhabditis elegans Hypothetical
          protein T15B7.15 protein.
          Length = 375

 Score = 24.6 bits (51), Expect = 8.5
 Identities = 15/43 (34%), Positives = 24/43 (55%)

Query: 20 ILEEVDEETSVIKKNKVWVRKWIDRSDKLGATKCLLKELALEE 62
          ++EE DEET+ +++     RK  DR  K+      L+E  L+E
Sbjct: 56 LVEEKDEETARLEEMLEEQRKESDRMFKIHRDNSELEEKKLKE 98


  Database: celegans
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 12,573,161
  Number of sequences in database:  27,539
  
Lambda     K      H
   0.318    0.134    0.374 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,651,640
Number of Sequences: 27539
Number of extensions: 52995
Number of successful extensions: 147
Number of sequences better than 10.0: 19
Number of HSP's better than 10.0 without gapping: 17
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 130
Number of HSP's gapped (non-prelim): 19
length of query: 72
length of database: 12,573,161
effective HSP length: 52
effective length of query: 20
effective length of database: 11,141,133
effective search space: 222822660
effective search space used: 222822660
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
S2: 51 (24.6 bits)