GeneModel BLAST Result against bee

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000747-TA|BGIBMGA000747-PA|undefined
         (72 letters)

Database: bee 
           429 sequences; 140,377 total letters

Searching.....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

EF127805-1|ABL67942.1|  461|Apis mellifera nicotinic acetylcholi...    21   2.0  
EF127804-1|ABL67941.1|  461|Apis mellifera nicotinic acetylcholi...    21   2.0  
EF127803-1|ABL67940.1|  461|Apis mellifera nicotinic acetylcholi...    21   2.0  
EF127802-1|ABL67939.1|  461|Apis mellifera nicotinic acetylcholi...    21   2.0  
EF127801-1|ABL67938.1|  461|Apis mellifera nicotinic acetylcholi...    21   2.0  
EF127800-1|ABL67937.1|  461|Apis mellifera nicotinic acetylcholi...    21   2.0  
DQ026036-1|AAY87895.1|  529|Apis mellifera nicotinic acetylcholi...    21   2.0  
DQ026035-1|AAY87894.1|  529|Apis mellifera nicotinic acetylcholi...    21   2.0  
AY569781-1|AAS75781.1|  461|Apis mellifera neuronal nicotinic ac...    20   3.4  
AY588474-1|AAT94401.1|  104|Apis mellifera defensin 2 protein.         19   6.0  
AB208108-1|BAE72140.1|   92|Apis mellifera Broad complex zinc fi...    19   6.0  
DQ071552-1|AAY82248.1|  495|Apis mellifera anarchy 1 protein.          19   7.9  

>EF127805-1|ABL67942.1|  461|Apis mellifera nicotinic
          acetylcholine receptor subunitalpha 6 transcript
          variant 6 protein.
          Length = 461

 Score = 20.6 bits (41), Expect = 2.0
 Identities = 8/29 (27%), Positives = 18/29 (62%), Gaps = 2/29 (6%)

Query: 16 IVMAILEEVDEETSVIKKNKVWVR-KWID 43
          I +  + +VDE+  ++  N  W++ +W+D
Sbjct: 18 ITLQQIIDVDEKNQILTTN-AWLKLEWVD 45


>EF127804-1|ABL67941.1|  461|Apis mellifera nicotinic
          acetylcholine receptor subunitalpha 6 transcript
          variant 5 protein.
          Length = 461

 Score = 20.6 bits (41), Expect = 2.0
 Identities = 8/29 (27%), Positives = 18/29 (62%), Gaps = 2/29 (6%)

Query: 16 IVMAILEEVDEETSVIKKNKVWVR-KWID 43
          I +  + +VDE+  ++  N  W++ +W+D
Sbjct: 18 ITLQQIIDVDEKNQILTTN-AWLKLEWVD 45


>EF127803-1|ABL67940.1|  461|Apis mellifera nicotinic
          acetylcholine receptor subunitalpha 6 transcript
          variant 4 protein.
          Length = 461

 Score = 20.6 bits (41), Expect = 2.0
 Identities = 8/29 (27%), Positives = 18/29 (62%), Gaps = 2/29 (6%)

Query: 16 IVMAILEEVDEETSVIKKNKVWVR-KWID 43
          I +  + +VDE+  ++  N  W++ +W+D
Sbjct: 18 ITLQQIIDVDEKNQILTTN-AWLKLEWVD 45


>EF127802-1|ABL67939.1|  461|Apis mellifera nicotinic
          acetylcholine receptor subunitalpha 6 transcript
          variant 3 protein.
          Length = 461

 Score = 20.6 bits (41), Expect = 2.0
 Identities = 8/29 (27%), Positives = 18/29 (62%), Gaps = 2/29 (6%)

Query: 16 IVMAILEEVDEETSVIKKNKVWVR-KWID 43
          I +  + +VDE+  ++  N  W++ +W+D
Sbjct: 18 ITLQQIIDVDEKNQILTTN-AWLKLEWVD 45


>EF127801-1|ABL67938.1|  461|Apis mellifera nicotinic
          acetylcholine receptor subunitalpha 6 transcript
          variant 2 protein.
          Length = 461

 Score = 20.6 bits (41), Expect = 2.0
 Identities = 8/29 (27%), Positives = 18/29 (62%), Gaps = 2/29 (6%)

Query: 16 IVMAILEEVDEETSVIKKNKVWVR-KWID 43
          I +  + +VDE+  ++  N  W++ +W+D
Sbjct: 18 ITLQQIIDVDEKNQILTTN-AWLKLEWVD 45


>EF127800-1|ABL67937.1|  461|Apis mellifera nicotinic
          acetylcholine receptor subunitalpha 6 transcript
          variant 1 protein.
          Length = 461

 Score = 20.6 bits (41), Expect = 2.0
 Identities = 8/29 (27%), Positives = 18/29 (62%), Gaps = 2/29 (6%)

Query: 16 IVMAILEEVDEETSVIKKNKVWVR-KWID 43
          I +  + +VDE+  ++  N  W++ +W+D
Sbjct: 18 ITLQQIIDVDEKNQILTTN-AWLKLEWVD 45


>DQ026036-1|AAY87895.1|  529|Apis mellifera nicotinic acetylcholine
           receptor alpha6subunit protein.
          Length = 529

 Score = 20.6 bits (41), Expect = 2.0
 Identities = 8/29 (27%), Positives = 18/29 (62%), Gaps = 2/29 (6%)

Query: 16  IVMAILEEVDEETSVIKKNKVWVR-KWID 43
           I +  + +VDE+  ++  N  W++ +W+D
Sbjct: 86  ITLQQIIDVDEKNQILTTN-AWLKLEWVD 113


>DQ026035-1|AAY87894.1|  529|Apis mellifera nicotinic acetylcholine
           receptor alpha6subunit protein.
          Length = 529

 Score = 20.6 bits (41), Expect = 2.0
 Identities = 8/29 (27%), Positives = 18/29 (62%), Gaps = 2/29 (6%)

Query: 16  IVMAILEEVDEETSVIKKNKVWVR-KWID 43
           I +  + +VDE+  ++  N  W++ +W+D
Sbjct: 86  ITLQQIIDVDEKNQILTTN-AWLKLEWVD 113


>AY569781-1|AAS75781.1|  461|Apis mellifera neuronal nicotinic
          acetylcholine Apisa7-2 subunit protein.
          Length = 461

 Score = 19.8 bits (39), Expect = 3.4
 Identities = 10/31 (32%), Positives = 17/31 (54%), Gaps = 2/31 (6%)

Query: 23 EVDEETSVIKKNKVWVRK-WIDRSDKLGATK 52
          +VDE+  ++  N  WV + W D   K  A++
Sbjct: 44 DVDEKNQILTTN-CWVTQIWTDHHLKWNASE 73


>AY588474-1|AAT94401.1|  104|Apis mellifera defensin 2 protein.
          Length = 104

 Score = 19.0 bits (37), Expect = 6.0
 Identities = 6/18 (33%), Positives = 9/18 (50%)

Query: 37 WVRKWIDRSDKLGATKCL 54
          W  KW+  +    A +CL
Sbjct: 69 WQSKWLSINHSACAIRCL 86


>AB208108-1|BAE72140.1|   92|Apis mellifera Broad complex zinc
          finger domain-Z3 isoform protein.
          Length = 92

 Score = 19.0 bits (37), Expect = 6.0
 Identities = 9/31 (29%), Positives = 14/31 (45%)

Query: 33 KNKVWVRKWIDRSDKLGATKCLLKELALEEI 63
          KN +   K +      G  K LLK  A++ +
Sbjct: 48 KNSLTTHKSLQHRGSSGMLKRLLKTTAIKNV 78


>DQ071552-1|AAY82248.1|  495|Apis mellifera anarchy 1 protein.
          Length = 495

 Score = 18.6 bits (36), Expect = 7.9
 Identities = 9/19 (47%), Positives = 11/19 (57%)

Query: 50  ATKCLLKELALEEIPKNTS 68
           AT+ +     L E PKNTS
Sbjct: 148 ATEKMFVARHLAETPKNTS 166


  Database: bee
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 140,377
  Number of sequences in database:  429
  
Lambda     K      H
   0.318    0.134    0.374 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,610
Number of Sequences: 429
Number of extensions: 704
Number of successful extensions: 12
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 12
length of query: 72
length of database: 140,377
effective HSP length: 46
effective length of query: 26
effective length of database: 120,643
effective search space:  3136718
effective search space used:  3136718
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 36 (19.4 bits)
S2: 36 (18.6 bits)