GeneModel BLAST Result against arabidopsis

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000747-TA|BGIBMGA000747-PA|undefined
         (72 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g14105.1 68418.m01650 expressed protein                             27   1.1  
At4g19530.1 68417.m02873 disease resistance protein (TIR-NBS-LRR...    26   2.7  
At5g24010.1 68418.m02821 protein kinase family protein contains ...    25   6.1  
At2g21010.1 68415.m02489 C2 domain-containing protein contains I...    25   6.1  
At5g10330.1 68418.m01198 histidinol-phosphate aminotransferase, ...    25   8.1  
At1g71920.1 68414.m08314 histidinol-phosphate aminotransferase, ...    25   8.1  

>At5g14105.1 68418.m01650 expressed protein
          Length = 76

 Score = 27.5 bits (58), Expect = 1.1
 Identities = 12/53 (22%), Positives = 29/53 (54%), Gaps = 3/53 (5%)

Query: 16 IVMAILEEVDEETSVIKKNKVWVRKWIDRSDKLGATKCL--LKELALE-EIPK 65
          +VM +  +V +  +V+++N   +R W++      ++K    +K   +E ++PK
Sbjct: 16 VVMLLRSDVKQSVTVLRRNVKHIRHWLEEESSAASSKAAESIKPKEIEVKVPK 68


>At4g19530.1 68417.m02873 disease resistance protein (TIR-NBS-LRR
           class), putative domain signature TIR-NBS-LRR exists,
           suggestive of a disease resistance protein.
          Length = 1167

 Score = 26.2 bits (55), Expect = 2.7
 Identities = 16/53 (30%), Positives = 29/53 (54%), Gaps = 2/53 (3%)

Query: 11  KLIKLIVMAILEEVDEETSVIKKNKVWVRKWIDRSDKLG-ATKCLLKELALEE 62
           KL+K  V  +L+ + +ET + K  K   RKW  +  K+  A + + ++L  E+
Sbjct: 303 KLLKNTVFIVLDGISDETHIQKLLKDH-RKWAKKGSKIVIARRAVTRDLLHED 354


>At5g24010.1 68418.m02821 protein kinase family protein contains
           protein kinase domain, Pfam:PF00069
          Length = 824

 Score = 25.0 bits (52), Expect = 6.1
 Identities = 13/32 (40%), Positives = 18/32 (56%), Gaps = 1/32 (3%)

Query: 8   RVNKLIKLI-VMAILEEVDEETSVIKKNKVWV 38
           RVN L+  + +M IL  V  E    K+N VW+
Sbjct: 379 RVNALLNGVEIMRILSPVSSEVVSGKRNVVWI 410


>At2g21010.1 68415.m02489 C2 domain-containing protein contains
          INTERPRO:IPR000008 C2 domain
          Length = 256

 Score = 25.0 bits (52), Expect = 6.1
 Identities = 15/38 (39%), Positives = 23/38 (60%), Gaps = 1/38 (2%)

Query: 25 DEETSVIKKNKVWVRKWIDRSDKLGATKCLLKELALEE 62
          D +T V++ N V+  + I + DK+G     LKELA +E
Sbjct: 43 DPKTQVLEFN-VYGWEKIGKHDKMGMNVLALKELAPDE 79


>At5g10330.1 68418.m01198 histidinol-phosphate aminotransferase,
           putative similar to histidinol-phosphate
           aminotransferase GB:CAA70403 [GI:335562] from [Nicotiana
           tabacum], Nicotiana plumbaginifolia [GI:12055099]
          Length = 417

 Score = 24.6 bits (51), Expect = 8.1
 Identities = 8/31 (25%), Positives = 20/31 (64%)

Query: 11  KLIKLIVMAILEEVDEETSVIKKNKVWVRKW 41
           K++++ ++ +L+E   E S ++    WV+K+
Sbjct: 236 KILEMPILVVLDEAYIEFSGVESRMKWVKKY 266


>At1g71920.1 68414.m08314 histidinol-phosphate aminotransferase,
           putative similar to histidinol-phosphate
           aminotransferase GB:CAA70403 [GI:335562] from [Nicotiana
           tabacum], Nicotiana plumbaginifolia [GI:12055099]
          Length = 415

 Score = 24.6 bits (51), Expect = 8.1
 Identities = 8/31 (25%), Positives = 20/31 (64%)

Query: 11  KLIKLIVMAILEEVDEETSVIKKNKVWVRKW 41
           K++++ ++ +L+E   E S ++    WV+K+
Sbjct: 234 KILEMPILVVLDEAYIEFSGVESRMKWVKKY 264


  Database: arabidopsis
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.374 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,617,049
Number of Sequences: 28952
Number of extensions: 52269
Number of successful extensions: 155
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 152
Number of HSP's gapped (non-prelim): 6
length of query: 72
length of database: 12,070,560
effective HSP length: 52
effective length of query: 20
effective length of database: 10,565,056
effective search space: 211301120
effective search space used: 211301120
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
S2: 51 (24.6 bits)