GeneModel BLAST Result against tribolium

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000746-TA|BGIBMGA000746-PA|undefined
         (437 letters)

Database: tribolium 
           317 sequences; 114,650 total letters

Searching....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY819656-1|AAV70656.1|   56|Tribolium castaneum elongation facto...    23   5.6  
AJ223614-1|CAA11490.1|  301|Tribolium castaneum orthodenticle-2 ...    23   5.6  
DQ157471-1|AAZ85125.1| 1639|Tribolium castaneum Down Syndrome ad...    22   9.8  

>AY819656-1|AAV70656.1|   56|Tribolium castaneum elongation factor
           1-alpha protein.
          Length = 56

 Score = 22.6 bits (46), Expect = 5.6
 Identities = 13/37 (35%), Positives = 20/37 (54%), Gaps = 4/37 (10%)

Query: 199 IEPGSSSEVVP-EFTSEIIPGNTIQFALEVLPEAVPG 234
           ++PG      P   T+E+    +++   E LPEAVPG
Sbjct: 23  LKPGMVVVFAPANITTEV---KSVEMHHEALPEAVPG 56


>AJ223614-1|CAA11490.1|  301|Tribolium castaneum orthodenticle-2
           protein protein.
          Length = 301

 Score = 22.6 bits (46), Expect = 5.6
 Identities = 15/49 (30%), Positives = 23/49 (46%), Gaps = 2/49 (4%)

Query: 195 FSNEIEPGSS--SEVVPEFTSEIIPGNTIQFALEVLPEAVPGISSEKLP 241
           +SN +  G +  SE+ P F S     ++    L+  P  VPG+    LP
Sbjct: 2   WSNSLTAGCNPDSELFPGFGSTCGGSSSSMAYLKSAPYPVPGLGLHGLP 50


>DQ157471-1|AAZ85125.1| 1639|Tribolium castaneum Down Syndrome
           adhesion molecule splicevariant 3.12.3.1 protein.
          Length = 1639

 Score = 21.8 bits (44), Expect = 9.8
 Identities = 10/22 (45%), Positives = 12/22 (54%)

Query: 197 NEIEPGSSSEVVPEFTSEIIPG 218
           NEI     SE V   T+E +PG
Sbjct: 975 NEIGSSEPSETVTIITAEEVPG 996


  Database: tribolium
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 114,650
  Number of sequences in database:  317
  
Lambda     K      H
   0.313    0.133    0.381 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 73,555
Number of Sequences: 317
Number of extensions: 2201
Number of successful extensions: 3
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 2
Number of HSP's gapped (non-prelim): 3
length of query: 437
length of database: 114,650
effective HSP length: 59
effective length of query: 378
effective length of database: 95,947
effective search space: 36267966
effective search space used: 36267966
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.9 bits)
S2: 44 (21.8 bits)