GeneModel BLAST Result against spombe

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000746-TA|BGIBMGA000746-PA|undefined
         (437 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1142.06 |get3||GET complex ATPase subunit Get3 |Schizosaccha...    28   3.0  
SPCC162.06c |||vacuolar sorting protein Vps60|Schizosaccharomyce...    28   3.0  
SPAPB2C8.01 |||glycoprotein |Schizosaccharomyces pombe|chr 1|||M...    27   3.9  
SPAC25H1.09 |mde5|meu30, SPAC4A8.01|alpha-amylase homolog Mde5|S...    27   5.2  
SPBC1711.05 |||nucleocytoplasmic transport chaperone Srp40 |Schi...    26   9.0  

>SPAC1142.06 |get3||GET complex ATPase subunit Get3
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 329

 Score = 27.9 bits (59), Expect = 3.0
 Identities = 16/48 (33%), Positives = 24/48 (50%), Gaps = 4/48 (8%)

Query: 192 VPGFSN----EIEPGSSSEVVPEFTSEIIPGNTIQFALEVLPEAVPGI 235
           VPGF N    EI+P  S + + E   +  P N +   ++ L   +PGI
Sbjct: 76  VPGFDNLSAMEIDPNLSIQEMTEQADQQNPNNPLSGMMQDLAFTIPGI 123


>SPCC162.06c |||vacuolar sorting protein Vps60|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 210

 Score = 27.9 bits (59), Expect = 3.0
 Identities = 9/25 (36%), Positives = 18/25 (72%)

Query: 70  EQSLSIRPPYVVPRDQLPSFIQRSV 94
           +QS + +P Y++P ++LP+F+   V
Sbjct: 179 DQSTAEKPSYLMPSNELPNFVDEEV 203


>SPAPB2C8.01 |||glycoprotein |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1220

 Score = 27.5 bits (58), Expect = 3.9
 Identities = 14/36 (38%), Positives = 20/36 (55%), Gaps = 3/36 (8%)

Query: 127 ITDPELGTVTLTLPESNLIFNSSEVLRVSSTDLVPG 162
           + +P  GTVT T+      FN++     S+TD VPG
Sbjct: 140 VVEPAAGTVTTTIYSGTTPFNTT---LASATDTVPG 172


>SPAC25H1.09 |mde5|meu30, SPAC4A8.01|alpha-amylase homolog
           Mde5|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 513

 Score = 27.1 bits (57), Expect = 5.2
 Identities = 12/26 (46%), Positives = 15/26 (57%)

Query: 271 EKPVIIREQKTLIVDEIKPFQIDGFR 296
           E P II      I D++K F+IDG R
Sbjct: 199 ENPQIIETLYNFIHDQVKQFKIDGLR 224


>SPBC1711.05 |||nucleocytoplasmic transport chaperone Srp40
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 451

 Score = 26.2 bits (55), Expect = 9.0
 Identities = 9/56 (16%), Positives = 25/56 (44%)

Query: 381 DQTEQAEGQNNEDRXXXXXXXXXXXXXXXXPTNKEADANEQKSEADNEGSDNNQAN 436
           D +      ++ED                  ++  + +++ +SE+ +EGSD++ ++
Sbjct: 113 DSSSSESESSSEDNDSSSSSSDSESESSSEDSDSSSSSSDSESESSSEGSDSSSSS 168


  Database: spombe
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.313    0.133    0.381 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,502,800
Number of Sequences: 5004
Number of extensions: 48032
Number of successful extensions: 82
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 76
Number of HSP's gapped (non-prelim): 8
length of query: 437
length of database: 2,362,478
effective HSP length: 75
effective length of query: 362
effective length of database: 1,987,178
effective search space: 719358436
effective search space used: 719358436
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.9 bits)
S2: 55 (26.2 bits)