GeneModel BLAST Result against rice

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000746-TA|BGIBMGA000746-PA|undefined
         (437 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

10_08_0516 + 18478743-18478830,18478940-18479319,18479406-184796...    29   5.5  
07_03_0873 + 22194172-22195434,22195534-22195670,22197531-221976...    29   9.7  
02_03_0345 + 17973509-17974131,17974207-17974537,17974624-179749...    29   9.7  

>10_08_0516 +
           18478743-18478830,18478940-18479319,18479406-18479641,
           18480280-18480538
          Length = 320

 Score = 29.5 bits (63), Expect = 5.5
 Identities = 15/40 (37%), Positives = 19/40 (47%), Gaps = 1/40 (2%)

Query: 193 PGFSNEIEPGSSSEVVPEFTSEIIPGNTIQFALEVLPEAV 232
           PGF   +  G+     PE   E +P  +  FA E LPE V
Sbjct: 266 PGFEAAVRGGAMERFAPELKIEFLPEGS-HFAQEQLPEQV 304


>07_03_0873 +
           22194172-22195434,22195534-22195670,22197531-22197639,
           22197739-22197865,22197952-22198012,22199332-22199722
          Length = 695

 Score = 28.7 bits (61), Expect = 9.7
 Identities = 13/62 (20%), Positives = 27/62 (43%)

Query: 376 SEVPQDQTEQAEGQNNEDRXXXXXXXXXXXXXXXXPTNKEADANEQKSEADNEGSDNNQA 435
           S+  + + E+A+G+N E+                     E +A E   E ++EG++++  
Sbjct: 137 SDSERGEAEEADGENEEEAAATDGEKEEEAAETDGEEEAEEEAAETAGENEDEGAESDPE 196

Query: 436 NE 437
            E
Sbjct: 197 GE 198


>02_03_0345 +
           17973509-17974131,17974207-17974537,17974624-17974985,
           17975314-17975572
          Length = 524

 Score = 28.7 bits (61), Expect = 9.7
 Identities = 13/36 (36%), Positives = 23/36 (63%)

Query: 7   DDISPSYRRTCIGHELNRKRQAEDRYQESLLRAISV 42
           DD +P+ RRT IG  L+ +R+  D   + L+R++ +
Sbjct: 283 DDHAPAKRRTMIGVLLSLQRKDPDSCPDQLIRSLCI 318


  Database: rice
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.313    0.133    0.381 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,266,942
Number of Sequences: 37544
Number of extensions: 288892
Number of successful extensions: 389
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 387
Number of HSP's gapped (non-prelim): 3
length of query: 437
length of database: 14,793,348
effective HSP length: 84
effective length of query: 353
effective length of database: 11,639,652
effective search space: 4108797156
effective search space used: 4108797156
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.9 bits)
S2: 61 (28.7 bits)