GeneModel BLAST Result against human

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000746-TA|BGIBMGA000746-PA|undefined
         (437 letters)

Database: human 
           224,733 sequences; 73,234,838 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF007193-1|AAC02271.1|  441|Homo sapiens mucin protein.                31   6.1  

>AF007193-1|AAC02271.1|  441|Homo sapiens mucin protein.
          Length = 441

 Score = 31.5 bits (68), Expect = 6.1
 Identities = 21/91 (23%), Positives = 36/91 (39%), Gaps = 3/91 (3%)

Query: 132 LGTVTLTLPESNLIFNSSEVLRVSSTDLVPGXXXXXXXXPAHEVAXXXXXXXXXXXXXXF 191
           L TVT T+P +NL+  ++++   S+              P+H                  
Sbjct: 352 LTTVTATVPTTNLVTTTTKITSHSTPSFT--SSIATTETPSHSTPRFTSSITTTETPSHS 409

Query: 192 VPGFSNEI-EPGSSSEVVPEFTSEIIPGNTI 221
            P F++ I    ++S   P FTS I   ++I
Sbjct: 410 TPRFTSSITNTKTTSHSSPSFTSSITTTDSI 440


  Database: human
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 73,234,838
  Number of sequences in database:  224,733
  
Lambda     K      H
   0.313    0.133    0.381 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 47,029,416
Number of Sequences: 224733
Number of extensions: 1537625
Number of successful extensions: 1911
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 0
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 1911
Number of HSP's gapped (non-prelim): 1
length of query: 437
length of database: 73,234,838
effective HSP length: 92
effective length of query: 345
effective length of database: 52,559,402
effective search space: 18132993690
effective search space used: 18132993690
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.9 bits)
S2: 67 (31.1 bits)